Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

30130935 .. 30135301

Gene Structure 4367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCGGACAACCTGGGGGAGCTCCGAGTACGTACTCGCCGTCCCCCACGACCCGGAAAACCAAGTCACTCATCTTCCGAAACGACGACGTCGACTGGGTCCGAACCGATGGCCGTGAATTCCACCAATGCAGACCTGCATTTTTCAAGACTGGTGCTGTAAACGCTGCTGCAGGCTCTGCATATGCAGAATTTGGAAATACCAAGGTCATTGTTTCTGTATTTGGTCCAAGAGAGAGTAAAAAGGCAATGATGTACAGTGATATAGGGCGGTTGAATTGCAATGTCAGCTATACAACTTTTGCCACTCCAGCTCGTGGACAGGGGTCAGACCACAAAGAGTTTTCTTCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTATTGGAATCTGGGGGCAGTGATCTTCCTGTAGTAATATCATGTGCTAGTCTTGCCTTAGCAGATGCAGGGATAATGATGTATGACCTTGTCGCCTCAGTCTCTGTGTCTTGTCTTGGAAAGAACCTAGTCATTGATCCTGTTTTGGAGGAAGAAAGTTACCAAGATGGAAGCTTAATGCTTGCTTGCATGCCTTCTCGCTATGAAGTCACTCAGCTAACTATAACGGGGGAATGGTCAACCCCAAAAATTAATGAGGGAATGCAGATATGCCTCGACGCCAGCGCAAAGCTTGCAACAATCATGAGGGAATGCTTAAAAGGACCTGATTCTGCTTTGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

257

Amino Acids

27.62

Weight (kDa)

5.1

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	43 - 167	4.5e-31	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	171 - 231	8.2e-07	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	2 cut(s)	3, 112
AcsI	RAATTY	2 cut(s)	119, 191
AcyI	GRCGYC	2 cut(s)	90, 705
AfaI	GTAC	3 cut(s)	31, 35, 257
AfiI	CCNNNNNNNGG	2 cut(s)	54, 317
AgsI	TTSAA	3 cut(s)	148, 277, 351
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	23, 291, 314, 365, 600, 643, 718
AluI	AGCT	7 cut(s)	23, 291, 314, 365, 600, 643, 718
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	2 cut(s)	179, 530
AoxI	GGCC	2 cut(s)	3, 112
ApeKI	GCWGC	2 cut(s)	167, 170
ApoI	RAATTY	2 cut(s)	119, 191
AseI	ATTAAT	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	100, 227, 749
AsuC2I	CCSGG	1 cut(s)	55
AvaII	GGWCC	3 cut(s)	100, 227, 749
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	154, 157
BccI	CCATC	2 cut(s)	104, 587
BceAI	ACGGC	2 cut(s)	25, 99
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	474, 554
BfmI	CTRYAG	2 cut(s)	171, 456
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
Bme1390I	CCNGG	2 cut(s)	15, 55
Bme18I	GGWCC	3 cut(s)	100, 227, 749
BmgT120I	GGNCC	3 cut(s)	100, 227, 749
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	15, 55
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	106
BoxI	GACNNNNGTC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	33
BsaHI	GRCGYC	2 cut(s)	90, 705
BsaJI	CCNNGG	2 cut(s)	14, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 317
Bse1I	ACTGG	2 cut(s)	101, 157
Bse3DI	GCAATG	2 cut(s)	255, 289
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	14, 204
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	54, 317
BseMI	GCAATG	2 cut(s)	255, 289
BseMII	CTCAG	2 cut(s)	537, 653
BseNI	ACTGG	2 cut(s)	101, 157
BseXI	GCAGC	2 cut(s)	154, 157
BshFI	GGCC	2 cut(s)	5, 114
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	6, 55
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	54, 317
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	693, 743
BsnI	GGCC	2 cut(s)	5, 114
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	448, 562
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	5, 114
BspCNI	CTCAG	2 cut(s)	536, 652
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	255, 289
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	101, 157
BssECI	CCNNGG	2 cut(s)	14, 204
BssMI	GATC	2 cut(s)	448, 562
BssNI	GRCGYC	2 cut(s)	90, 705
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	260, 409
BstACI	GRCGYC	2 cut(s)	90, 705
BstAPI	GCANNNNNTGC	2 cut(s)	179, 719
BstAUI	TGTACA	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	6 cut(s)	175, 609, 613, 617, 709, 720
BstDEI	CTNAG	3 cut(s)	484, 523, 639
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	2 cut(s)	451, 565
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	448, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 179, 288, 311, 479, 719
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	619
BstPAI	GACNNNNGTC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	13, 53
BstSFI	CTRYAG	2 cut(s)	171, 456
BstSNI	TACGTA	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	154, 157
BsuRI	GGCC	2 cut(s)	5, 114
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	265, 451
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	6 cut(s)	175, 609, 613, 617, 709, 720
CaiI	CAGNNNCTG	2 cut(s)	179, 530
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	100, 227, 749
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	30, 34, 256
CviAII	CATG	3 cut(s)	468, 616, 730
CviQI	GTAC	3 cut(s)	30, 34, 256
DdeI	CTNAG	3 cut(s)	484, 523, 639
DpnI	GATC	2 cut(s)	450, 564
DpnII	GATC	2 cut(s)	448, 562
EaeI	YGGCCR	2 cut(s)	3, 112
Ecl136II	GAGCTC	1 cut(s)	23
Eco105I	TACGTA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	100, 227, 749
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	471, 619, 733
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	467, 615, 729
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	168, 171
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	168, 171
FspBI	CTAG	2 cut(s)	474, 554
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	2 cut(s)	168, 171
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	5, 114
HapII	CCGG	2 cut(s)	6, 55
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	713
Hin1I	GRCGYC	2 cut(s)	90, 705
Hin1II	CATG	3 cut(s)	471, 619, 733
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	2 cut(s)	94, 666
HindII	GTYRAC	2 cut(s)	94, 666
HindIII	AAGCTT	3 cut(s)	363, 598, 716
HinfI	GANTC	2 cut(s)	434, 755
HpaII	CCGG	2 cut(s)	6, 55
Hpy166II	GTNNAC	4 cut(s)	94, 163, 320, 666
Hpy188I	TCNGA	4 cut(s)	27, 80, 104, 331
Hpy188III	TCNNGA	2 cut(s)	148, 730
Hpy8I	GTNNAC	4 cut(s)	94, 163, 320, 666
Hpy99I	CGWCG	4 cut(s)	89, 92, 95, 707
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	2 cut(s)	260, 409
HpyCH4IV	ACGT	2 cut(s)	32, 90
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 179, 288, 311, 479, 719
HpyF3I	CTNAG	3 cut(s)	484, 523, 639
HpySE526I	ACGT	2 cut(s)	32, 90
Hsp92I	GRCGYC	2 cut(s)	90, 705
Hsp92II	CATG	3 cut(s)	471, 619, 733
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	2 cut(s)	448, 562
LmnI	GCTCC	2 cut(s)	20, 28
Lsp1109I	GCAGC	2 cut(s)	154, 157
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	474, 554
MaeII	ACGT	2 cut(s)	32, 90
MaeIII	GTNAC	3 cut(s)	66, 584, 634
MalI	GATC	2 cut(s)	450, 564
MboI	GATC	2 cut(s)	448, 562
MboII	GAAGA	4 cut(s)	67, 339, 443, 590
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	119, 191, 277, 675
MnlI	CCTC	6 cut(s)	364, 532, 568, 676, 710, 726
MseI	TTAA	3 cut(s)	602, 678, 743
MspI	CCGG	2 cut(s)	6, 55
MspR9I	CCNGG	2 cut(s)	15, 55
Mva1269I	GAATGC	2 cut(s)	693, 743
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	6 cut(s)	164, 179, 288, 311, 479, 719
NciI	CCSGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	448, 562
NlaIII	CATG	3 cut(s)	471, 619, 733
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	66, 634
NspI	RCATGY	1 cut(s)	619
PaeI	GCATGC	1 cut(s)	619
PagI	TCATGA	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 90
PctI	GAATGC	2 cut(s)	693, 743
PfeI	GAWTC	2 cut(s)	434, 755
PflFI	GACNNNGTC	3 cut(s)	89, 98, 515
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	169, 172
Ppu21I	YACGTR	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	100, 227, 749
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	179, 530
PsyI	GACNNNGTC	3 cut(s)	89, 98, 515
RsaI	GTAC	3 cut(s)	31, 35, 257
RsaNI	GTAC	3 cut(s)	30, 34, 256
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	602, 678, 743
SatI	GCNGC	2 cut(s)	168, 171
Sau3AI	GATC	2 cut(s)	448, 562
Sau96I	GGNCC	3 cut(s)	100, 227, 749
ScrFI	CCNGG	2 cut(s)	15, 55
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	171, 456
SinI	GGWCC	3 cut(s)	100, 227, 749
SnaBI	TACGTA	1 cut(s)	33
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	4 cut(s)	119, 191, 277, 675
SsiI	CCGC	1 cut(s)	271
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	474, 554
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	13, 53
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	260, 409
TaiI	ACGT	2 cut(s)	35, 93
TaqI	TCGA	2 cut(s)	93, 702
TasI	AATT	4 cut(s)	119, 191, 277, 675
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	434, 755
Tru1I	TTAA	3 cut(s)	602, 678, 743
Tru9I	TTAA	3 cut(s)	602, 678, 743
TscAI	CASTG	2 cut(s)	265, 451
TseFI	GTSAC	2 cut(s)	66, 634
TseI	GCWGC	2 cut(s)	167, 170
Tsp45I	GTSAC	2 cut(s)	66, 634
TspDTI	ATGAA	2 cut(s)	347, 645
TspRI	CASTG	2 cut(s)	265, 451
Tth111I	GACNNNGTC	3 cut(s)	89, 98, 515
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	3 cut(s)	100, 227, 749
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	2 cut(s)	119, 191
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	474, 554
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.