Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

34671215 .. 34674663

Gene Structure 3449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCGTAAATTCCACCAATGCAGACCTGCATGGGTCGGACCACAAAGAATTTCCTTTGATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTTGATGTTTTTGCATTGGTATTGGAATCTGGGGGCAGTGATCTTCCTGTAGTAATATCATGTGCTAGTCTAGCCCTAGCAGATGCAGGGATAATGATGTATGACCTTGTTGCCTCAGTCTCTGTCAACCTAGTGATTGATCCTGTTTTGGAGGAAGAGAGTTACCAAGATGGAAGCTTAATGCTTACCTGCATGCCTTCTCGCTATGAAGTTACTCAGCCAACTGTGTCGGGGGAATGGTCAACCCCAAAAATTAATGAGCAAGGGATGCAGATATGCCTCGACGCCAGTGCAAAGCTTGCAACAATCATGAGGGAATGCTTAAAAGGAGCTGATTCTGCTTTGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

157

Amino Acids

16.69

Weight (kDa)

4.27

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	12 - 70	1.9e-10	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 314
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	10, 50
AcyI	GRCGYC	1 cut(s)	402
AluBI	AGCT	4 cut(s)	74, 294, 415, 449
AluI	AGCT	4 cut(s)	74, 294, 415, 449
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	10, 50
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BccI	CCATC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	4 cut(s)	183, 188, 194, 248
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	2 cut(s)	36, 314
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	3 cut(s)	51, 190, 375
BsaHI	GRCGYC	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	246, 347
BseNI	ACTGG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	157, 256
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	245, 346
BspHI	TCATGA	1 cut(s)	426
BspMI	ACCTGC	2 cut(s)	36, 314
BspPI	GGATC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	157, 256
BssNI	GRCGYC	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	118, 343
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	402
BstAPI	GCANNNNNTGC	2 cut(s)	385, 416
BstC8I	GCNNGC	2 cut(s)	311, 417
BstDEI	CTNAG	2 cut(s)	232, 333
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	160, 259
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	157, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 385, 416, 455
BstNSI	RCATGY	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 412
BveI	ACCTGC	2 cut(s)	36, 314
Cac8I	GCNNGC	2 cut(s)	311, 417
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	410
CviAII	CATG	4 cut(s)	32, 177, 310, 427
CviJI	RGCY	7 cut(s)	5, 74, 191, 294, 337, 415, 449
CviKI_1	RGCY	7 cut(s)	5, 74, 191, 294, 337, 415, 449
DdeI	CTNAG	2 cut(s)	232, 333
DpnI	GATC	2 cut(s)	159, 258
DpnII	GATC	2 cut(s)	157, 256
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	40
FaeI	CATG	4 cut(s)	35, 180, 313, 430
FaiI	YATR	8 cut(s)	33, 69, 178, 219, 311, 324, 394, 428
FatI	CATG	4 cut(s)	31, 176, 309, 426
FokI	GGATG	1 cut(s)	397
FspBI	CTAG	4 cut(s)	183, 188, 194, 248
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	35, 180, 313, 430
HincII	GTYRAC	2 cut(s)	244, 360
HindII	GTYRAC	2 cut(s)	244, 360
HindIII	AAGCTT	3 cut(s)	72, 292, 413
HinfI	GANTC	2 cut(s)	143, 452
Hpy166II	GTNNAC	2 cut(s)	244, 360
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	2 cut(s)	244, 360
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	118, 343
HpyCH4V	TGCA	9 cut(s)	23, 31, 86, 131, 203, 309, 388, 410, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 385, 416, 455
HpyF3I	CTNAG	2 cut(s)	232, 333
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	35, 180, 313, 430
Kzo9I	GATC	2 cut(s)	157, 256
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	7 cut(s)	41, 132, 177, 189, 273, 319, 418
LweI	GCATC	3 cut(s)	51, 190, 375
MaeI	CTAG	4 cut(s)	183, 188, 194, 248
MaeIII	GTNAC	2 cut(s)	278, 328
MalI	GATC	2 cut(s)	159, 258
MboI	GATC	2 cut(s)	157, 256
MboII	GAAGA	2 cut(s)	152, 284
MluCI	AATT	3 cut(s)	10, 50, 369
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	73, 241, 262, 407, 423
MseI	TTAA	3 cut(s)	296, 372, 440
Mva1269I	GAATGC	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	188, 385, 416, 455
NdeII	GATC	2 cut(s)	157, 256
NlaIII	CATG	4 cut(s)	35, 180, 313, 430
NspI	RCATGY	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	426
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	143, 452
PshBI	ATTAAT	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	296, 372, 440
Sau3AI	GATC	2 cut(s)	157, 256
Sau96I	GGNCC	1 cut(s)	40
SetI	ASST	8 cut(s)	30, 76, 225, 249, 296, 308, 417, 451
SfaNI	GCATC	3 cut(s)	51, 190, 375
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	40
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	3 cut(s)	10, 50, 369
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	4 cut(s)	183, 188, 194, 248
TaaI	ACNGT	2 cut(s)	118, 343
TaqI	TCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	10, 50, 369
TfiI	GAWTC	2 cut(s)	143, 452
Tru1I	TTAA	3 cut(s)	296, 372, 440
Tru9I	TTAA	3 cut(s)	296, 372, 440
TscAI	CASTG	2 cut(s)	160, 412
TspDTI	ATGAA	2 cut(s)	56, 339
TspRI	CASTG	2 cut(s)	160, 412
VpaK11BI	GGWCC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	10, 50
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	4 cut(s)	183, 188, 194, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.