Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Reverse (-)

18533181 .. 18534747

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGGAGCAACTTCGACTACCTACTTGTCGTCCCCTACAACCCGGAAATTAATTCAAGTCACTCATATTCCAAAACGGCGACGTCGATTGGGTGCGAACCGATGGCCATGCATGATTTCCACCAATGCAGACCTGCCTCTAACATTGGTTGTTGAGTGTGCTTTTGCCTTGAACATTATTGGGGTTCAAATTTTCAAGATTGGTGTTGTAAATGCTGTTGCCCGGTCTGCGTATGCAGATCGAATTCGGAAATACCAAGATTTGAGCCAAGAGAGAGGGTCAAACCACAAAGAGTTTTCTTCACTGCTTCATATAGCTTTAGAGGGTGCAATTTTGCTGGAAACTTTCCCCAAGACTACTGTGGATGTCTTTGCATTGGTGTTTGAATCTGAAGGCAGTAAGCTTTTCAACTTAAATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

143

Amino Acids

15.8

Weight (kDa)

9.69

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	192, 246, 418
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	85
AgsI	TTSAA	6 cut(s)	59, 175, 191, 199, 389, 412
AluBI	AGCT	2 cut(s)	320, 406
AluI	AGCT	2 cut(s)	320, 406
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	192, 246, 418
AseI	ATTAAT	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	46, 226
BalI	TGGCCA	1 cut(s)	109
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BcnI	CCSGG	2 cut(s)	46, 226
BfuAI	ACCTGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	46, 226
BmrFI	CCNGG	2 cut(s)	46, 226
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	46, 226
BsaHI	GRCGYC	1 cut(s)	85
BseGI	GGATG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	46, 226
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	144
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	44, 224
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	144
CviAII	CATG	2 cut(s)	111, 115
CviJI	RGCY	5 cut(s)	5, 109, 270, 320, 406
CviKI_1	RGCY	5 cut(s)	5, 109, 270, 320, 406
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	116
FaeI	CATG	2 cut(s)	114, 118
FaiI	YATR	6 cut(s)	69, 112, 116, 237, 315, 317
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	110, 114
FokI	GGATG	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	46, 226
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	114, 118
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	46, 226
Hpy188I	TCNGA	2 cut(s)	252, 394
Hpy188III	TCNNGA	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	87, 90
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	5 cut(s)	114, 131, 239, 332, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	114, 118
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	4 cut(s)	59, 149, 239, 326
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	6 cut(s)	50, 54, 192, 246, 333, 418
MluNI	TGGCCA	1 cut(s)	109
MnlI	CCTC	3 cut(s)	150, 272, 319
Mox20I	TGGCCA	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	3 cut(s)	53, 416, 427
Msp20I	TGGCCA	1 cut(s)	109
MspI	CCGG	2 cut(s)	46, 226
MspR9I	CCNGG	2 cut(s)	46, 226
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	46, 226
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	114, 118
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	53, 416, 427
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	46, 226
SetI	ASST	5 cut(s)	26, 88, 138, 322, 408
Sse9I	AATT	6 cut(s)	50, 54, 192, 246, 333, 418
StyD4I	CCNGG	2 cut(s)	44, 224
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	3 cut(s)	17, 88, 244
TasI	AATT	6 cut(s)	50, 54, 192, 246, 333, 418
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	3 cut(s)	53, 416, 427
Tru9I	TTAA	3 cut(s)	53, 416, 427
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	312
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	3 cut(s)	192, 246, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.