Exosome complex component
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNase_PH | PF01138 | 27 - 104 | 5.8e-13 | 3' exoribonuclease family, domain 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 35, 128 |
| AclWI | GGATC | 2 cut(s) | 12, 145 |
| AcsI | RAATTY | 1 cut(s) | 152 |
| AfaI | GTAC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 35, 128 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| AluBI | AGCT | 3 cut(s) | 102, 125, 176 |
| AluI | AGCT | 3 cut(s) | 102, 125, 176 |
| AlwI | GGATC | 2 cut(s) | 12, 145 |
| ApoI | RAATTY | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BauI | CACGAG | 1 cut(s) | 126 |
| BfaI | CTAG | 4 cut(s) | 285, 290, 296, 355 |
| BfmI | CTRYAG | 1 cut(s) | 267 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmsI | GCATC | 1 cut(s) | 153 |
| BpmI | CTGGAG | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 35, 128 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 35, 128 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 35, 128 |
| Bsp1407I | TGTACA | 1 cut(s) | 66 |
| Bsp143I | GATC | 3 cut(s) | 4, 137, 259 |
| BspPI | GGATC | 2 cut(s) | 12, 145 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 66 |
| BssMI | GATC | 3 cut(s) | 4, 137, 259 |
| BssSI | CACGAG | 1 cut(s) | 126 |
| Bst2BI | CACGAG | 1 cut(s) | 126 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 220 |
| BstAUI | TGTACA | 1 cut(s) | 66 |
| BstDEI | CTNAG | 1 cut(s) | 41 |
| BstKTI | GATC | 3 cut(s) | 7, 140, 262 |
| BstMBI | GATC | 3 cut(s) | 4, 137, 259 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 290 |
| BstSFI | CTRYAG | 1 cut(s) | 267 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BtsI | GCAGTG | 2 cut(s) | 66, 262 |
| BtsIMutI | CAGTG | 3 cut(s) | 66, 76, 262 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 324 |
| CviAII | CATG | 1 cut(s) | 279 |
| CviJI | RGCY | 6 cut(s) | 40, 81, 102, 125, 176, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 81, 102, 125, 176, 293 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 1 cut(s) | 41 |
| DpnI | GATC | 3 cut(s) | 6, 139, 261 |
| DpnII | GATC | 3 cut(s) | 4, 137, 259 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| FaeI | CATG | 1 cut(s) | 282 |
| FaiI | YATR | 6 cut(s) | 12, 77, 105, 171, 280, 321 |
| FatI | CATG | 1 cut(s) | 278 |
| FspBI | CTAG | 4 cut(s) | 285, 290, 296, 355 |
| GsuI | CTGGAG | 1 cut(s) | 105 |
| Hin1II | CATG | 1 cut(s) | 282 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 1 cut(s) | 245 |
| Hpy166II | GTNNAC | 1 cut(s) | 131 |
| Hpy188I | TCNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 1 cut(s) | 131 |
| HpyAV | CCTTC | 1 cut(s) | 49 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 220 |
| HpyCH4V | TGCA | 4 cut(s) | 10, 93, 188, 233 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 41 |
| Hsp92II | CATG | 1 cut(s) | 282 |
| Kzo9I | GATC | 3 cut(s) | 4, 137, 259 |
| LpnPI | CCDG | 6 cut(s) | 95, 119, 135, 234, 279, 291 |
| LweI | GCATC | 1 cut(s) | 153 |
| MaeI | CTAG | 4 cut(s) | 285, 290, 296, 355 |
| MalI | GATC | 3 cut(s) | 6, 139, 261 |
| MboI | GATC | 3 cut(s) | 4, 137, 259 |
| MboII | GAAGA | 3 cut(s) | 150, 254, 311 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 2 cut(s) | 88, 152 |
| MnlI | CCTC | 2 cut(s) | 175, 343 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 290 |
| NdeII | GATC | 3 cut(s) | 4, 137, 259 |
| NlaIII | CATG | 1 cut(s) | 282 |
| PfeI | GAWTC | 1 cut(s) | 245 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 35, 128 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| Sau3AI | GATC | 3 cut(s) | 4, 137, 259 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SetI | ASST | 4 cut(s) | 104, 127, 178, 327 |
| SfaNI | GCATC | 1 cut(s) | 153 |
| SfcI | CTRYAG | 1 cut(s) | 267 |
| SinI | GGWCC | 1 cut(s) | 142 |
| Sse9I | AATT | 2 cut(s) | 88, 152 |
| SspI | AATATT | 1 cut(s) | 195 |
| SspMI | CTAG | 4 cut(s) | 285, 290, 296, 355 |
| TaaI | ACNGT | 2 cut(s) | 71, 220 |
| TaqI | TCGA | 1 cut(s) | 161 |
| TasI | AATT | 2 cut(s) | 88, 152 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TfiI | GAWTC | 1 cut(s) | 245 |
| TscAI | CASTG | 3 cut(s) | 66, 76, 262 |
| TspDTI | ATGAA | 3 cut(s) | 36, 158, 340 |
| TspRI | CASTG | 3 cut(s) | 66, 76, 262 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 35, 128 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 152 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 217 |
| XspI | CTAG | 4 cut(s) | 285, 290, 296, 355 |