Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

30471096 .. 30473126

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCCGTAAATTCCACCAATGCAGACCTGCATGGGTCGGACCACAAAGAATTTTCTTCGATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTATTGGAATCTGGGGGCAATCAGTCAGTGATTCATTGTGTCATAAACAACCTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

64

Amino Acids

6.88

Weight (kDa)

5.29

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	11 - 59	1.3e-06	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	10, 50
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	10, 50
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspMI	ACCTGC	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	2 cut(s)	5, 74
CviKI_1	RGCY	2 cut(s)	5, 74
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	40
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 69, 179, 193
FatI	CATG	1 cut(s)	31
FokI	GGATG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	143, 166
Hpy188I	TCNGA	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	23, 31, 86, 131
Hsp92II	CATG	1 cut(s)	35
LpnPI	CCDG	2 cut(s)	41, 132
LweI	GCATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	48
MluCI	AATT	2 cut(s)	10, 50
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	143, 166
PspPI	GGNCC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	40
SetI	ASST	3 cut(s)	30, 76, 189
SfaNI	GCATC	1 cut(s)	51
SgeI	CNNG	4 cut(s)	40, 44, 121, 159
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	10, 50
SspI	AATATT	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	10, 50
TfiI	GAWTC	2 cut(s)	143, 166
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	56, 158
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	10, 50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.