Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001248.1

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Forward (+)

1176 .. 4819

Gene Structure 3644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001248.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggaggaagaatcttgggttgaaattgaatatgcaaatattcaagaggaagaagcaacgatggatgagaaggaaaatgagaaagtgaaagaagtaaaaagatacataatagagattagacggagacctgcatttttcaagactggtgctgtaaacgctgctgcaggctctgcatatgcagaatttggaaataccaaggtcattgtttctgtatttggtccaagagagagtaaaaaggcaatgatgtacagtgatatagggcggttgaattgcaatgtcagctatacaacttttgccactccagctcgtggacagggttcagaccacaaagagttttcttcaatgcttcataaagctttggagggggcaataatattggaaactttccccaagactactgtggatgtttttgcattggtattggaatctgggggcagtgatcttcctgtagtaatatcatgtgctagtcttgccttagcagatgcagggataatgatgtatgaccttgtcgcctcagtctctgtgtcttgtcttggaaagaacctagtcattgatcctgttttggaggaagaaagttaccaagatggaagcttaatgcttgcttgcatgccttctcgctatgaagtcactcagctaactataacgggggaatggtcaaccccaaaaattaatgagggaatgcagatatgcctcgacgccagcgcaaagcttgcaacaatcatgagggaatgcttaaaaggacctgattctgctttggaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

254

Amino Acids

27.82

Weight (kDa)

4.68

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	6 cut(s)	23, 29, 44, 139, 268, 342
AluBI	AGCT	6 cut(s)	282, 305, 356, 591, 634, 709
AluI	AGCT	6 cut(s)	282, 305, 356, 591, 634, 709
Alw26I	GTCTC	2 cut(s)	118, 523
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	2 cut(s)	170, 521
ApeKI	GCWGC	2 cut(s)	158, 161
ApoI	RAATTY	1 cut(s)	182
AseI	ATTAAT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	218, 740
AvaII	GGWCC	2 cut(s)	218, 740
BauI	CACGAG	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	145, 148
BccI	CCATC	2 cut(s)	55, 578
BcoDI	GTCTC	2 cut(s)	118, 523
BfaI	CTAG	2 cut(s)	465, 545
BfmI	CTRYAG	2 cut(s)	162, 447
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme18I	GGWCC	2 cut(s)	218, 740
BmgT120I	GGNCC	2 cut(s)	218, 740
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	2 cut(s)	246, 280
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	70, 409
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	246, 280
BseMII	CTCAG	2 cut(s)	528, 644
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	145, 148
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	118, 523
BsmI	GAATGC	2 cut(s)	684, 734
Bso31I	GGTCTC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	439, 553
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	527, 643
BspHI	TCATGA	1 cut(s)	720
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	246, 280
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	439, 553
BssNI	GRCGYC	1 cut(s)	696
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	251, 400
BstACI	GRCGYC	1 cut(s)	696
BstAPI	GCANNNNNTGC	2 cut(s)	170, 710
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	6 cut(s)	166, 600, 604, 608, 700, 711
BstDEI	CTNAG	3 cut(s)	475, 514, 630
BstF5I	GGATG	2 cut(s)	70, 409
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	2 cut(s)	442, 556
BstMAI	GTCTC	2 cut(s)	118, 523
BstMBI	GATC	2 cut(s)	439, 553
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 170, 279, 302, 470, 710
BstNSI	RCATGY	1 cut(s)	610
BstSFI	CTRYAG	2 cut(s)	162, 447
BstV1I	GCAGC	2 cut(s)	145, 148
BtsCI	GGATG	2 cut(s)	70, 409
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	256, 442
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	166, 600, 604, 608, 700, 711
CaiI	CAGNNNCTG	2 cut(s)	170, 521
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	218, 740
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	459, 607, 721
CviJI	RGCY	7 cut(s)	168, 282, 305, 356, 591, 634, 709
CviKI_1	RGCY	7 cut(s)	168, 282, 305, 356, 591, 634, 709
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	475, 514, 630
DpnI	GATC	2 cut(s)	441, 555
DpnII	GATC	2 cut(s)	439, 553
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	218, 740
EcoO109I	RGGNCCY	1 cut(s)	740
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	462, 610, 724
FatI	CATG	3 cut(s)	458, 606, 720
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	2 cut(s)	77, 416
Fsp4HI	GCNGC	2 cut(s)	159, 162
FspBI	CTAG	2 cut(s)	465, 545
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	2 cut(s)	159, 162
GsuI	CTGGAG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	3 cut(s)	462, 610, 724
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	3 cut(s)	354, 589, 707
HinfI	GANTC	3 cut(s)	11, 425, 746
Hpy166II	GTNNAC	3 cut(s)	154, 311, 657
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	3 cut(s)	44, 139, 721
Hpy8I	GTNNAC	3 cut(s)	154, 311, 657
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	64, 621
HpyCH4III	ACNGT	2 cut(s)	251, 400
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 170, 279, 302, 470, 710
HpyF3I	CTNAG	3 cut(s)	475, 514, 630
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	462, 610, 724
HspAI	GCGC	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	439, 553
Lsp1109I	GCAGC	2 cut(s)	145, 148
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	465, 545
MaeIII	GTNAC	2 cut(s)	575, 625
MalI	GATC	2 cut(s)	441, 555
MboI	GATC	2 cut(s)	439, 553
MboII	GAAGA	5 cut(s)	20, 62, 330, 434, 581
MluCI	AATT	4 cut(s)	24, 182, 268, 666
MnlI	CCTC	7 cut(s)	40, 355, 523, 559, 667, 701, 717
MseI	TTAA	3 cut(s)	593, 669, 734
Mva1269I	GAATGC	2 cut(s)	684, 734
MwoI	GCNNNNNNNGC	6 cut(s)	155, 170, 279, 302, 470, 710
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	439, 553
NlaIII	CATG	3 cut(s)	462, 610, 724
NmuCI	GTSAC	1 cut(s)	625
NspI	RCATGY	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	720
PctI	GAATGC	2 cut(s)	684, 734
PfeI	GAWTC	3 cut(s)	11, 425, 746
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	160, 163
PpuMI	RGGWCCY	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	740
PspPI	GGNCC	2 cut(s)	218, 740
PspPPI	RGGWCCY	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	170, 521
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	593, 669, 734
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	2 cut(s)	439, 553
Sau96I	GGNCC	2 cut(s)	218, 740
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	2 cut(s)	162, 447
SinI	GGWCC	2 cut(s)	218, 740
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	4 cut(s)	24, 182, 268, 666
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	2 cut(s)	40, 375
SspMI	CTAG	2 cut(s)	465, 545
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	251, 400
TaqI	TCGA	1 cut(s)	693
TasI	AATT	4 cut(s)	24, 182, 268, 666
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	11, 425, 746
Tru1I	TTAA	3 cut(s)	593, 669, 734
Tru9I	TTAA	3 cut(s)	593, 669, 734
TscAI	CASTG	2 cut(s)	256, 442
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	2 cut(s)	158, 161
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	2 cut(s)	338, 636
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	256, 442
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	218, 740
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	465, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.