Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Reverse (-)

12887430 .. 12891229

Gene Structure 3800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1139300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCGGGAAAGGAGGAGCAACCCCGAGCACTTACGCGCCGTCTCCGACGACCCAGAAGGCCAAATCCCTAATTTTCGGAAACGACGACGTTGATTGGGTCCGTTCCGACGGCCGTGAATTCCACCAATGCCGACCTGCCTTTTTCAAGACTGGTGCTGTAAATTGTGCTTCAGGATCAGCTTATGCAGAGTTTGGAAATACCAAGGTCATTGTTTCTGTATTTGGGCCAAGAGAGAGTAAGAAGGCAATGATGTACAGTGATATAGGACGCTTAAATTGCGATGTCAGCTATACAACTTTTGCTACCCCAGTTCGTGGACAGGGGTTGGACCACAAAGAATTTTCTTCAATGCTTCATAAAGCTTTAGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTGTTGGAATCTGGAGGCAGTGATTTTCCTGTAATCATATCATGTGCTAGCCTTGCCCTAGCAGATGCCGGGATAATGATGTATGACCTTGTTGCTTCGGTTTCTGTGTCTTGTCTCGGAAAGAACCTTGTTATCGATCCTATTTTGGAGGAGGAAAGCTACCAAGATGGAAGCTTAATGCTGACTTGTATACCTTCTCGCTACGAGGTCACTCAACTAACTATTACTGGGGAATGGTCAACCCCAAAAGTTAATGAGGGAATGCAAATATGCCTGGATGCCTGCGCAAAGCTTGTGGTGATCATGAGGGCATGCTTGAAAGGGACTAATTCGGCCTTGGAAGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

259

Amino Acids

27.69

Weight (kDa)

5.05

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	43 - 167	1.4e-29	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	712
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	616
AccII	CGCG	1 cut(s)	38
AclWI	GGATC	2 cut(s)	184, 557
AcoI	YGGCCR	2 cut(s)	3, 112
AcsI	RAATTY	2 cut(s)	119, 341
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	148, 351, 745
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	6 cut(s)	182, 291, 365, 585, 600, 718
AluI	AGCT	6 cut(s)	182, 291, 365, 585, 600, 718
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	48, 545
AlwI	GGATC	2 cut(s)	184, 557
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	5 cut(s)	3, 60, 112, 227, 759
ApoI	RAATTY	2 cut(s)	119, 341
AspLEI	GCGC	2 cut(s)	40, 713
AspS9I	GGNCC	3 cut(s)	100, 227, 331
AsuC2I	CCSGG	2 cut(s)	7, 496
AsuHPI	GGTGA	1 cut(s)	736
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	100, 331
Bbv12I	GWGCWC	1 cut(s)	32
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	3 cut(s)	25, 99, 127
BciT130I	CCWGG	1 cut(s)	701
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	7, 496
BcoDI	GTCTC	2 cut(s)	48, 545
BfaI	CTAG	2 cut(s)	474, 485
BfuAI	ACCTGC	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	7, 496, 701
Bme18I	GGWCC	2 cut(s)	100, 331
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	100, 227, 331
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	7, 496, 701
BmrI	ACTGGG	2 cut(s)	305, 663
BmsI	GCATC	2 cut(s)	481, 694
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	2 cut(s)	305, 663
BpmI	CTGGAG	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	7, 496
Bsa29I	ATCGAT	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	204, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	157, 311, 658
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	701
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	204, 762
BseGI	GGATG	2 cut(s)	418, 709
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	157, 311, 658
BseRI	GAGGAG	2 cut(s)	30, 590
BseX3I	CGGCCG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	5 cut(s)	5, 62, 114, 229, 761
BshVI	ATCGAT	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	6, 495
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	48, 545
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	5 cut(s)	5, 62, 114, 229, 761
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	176, 562, 726
BspANI	GGCC	5 cut(s)	5, 62, 114, 229, 761
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	184, 557
BsrDI	GCAATG	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	157, 311, 658
BssECI	CCNNGG	2 cut(s)	204, 762
BssMI	GATC	3 cut(s)	176, 562, 726
BssNAI	GTATAC	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	204, 762
Bst1107I	GTATAC	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	260, 409
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	475, 709, 739
BstF5I	GGATG	2 cut(s)	418, 709
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	40, 713
BstKTI	GATC	3 cut(s)	179, 565, 729
BstMAI	GTCTC	2 cut(s)	48, 545
BstMBI	GATC	3 cut(s)	176, 562, 726
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 288, 479
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	3 cut(s)	5, 494, 699
BstUI	CGCG	1 cut(s)	38
BstZ17I	GTATAC	1 cut(s)	617
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	561
BsuRI	GGCC	5 cut(s)	5, 62, 114, 229, 761
BsuTUI	ATCGAT	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	418, 709
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	265, 451
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	475, 709, 739
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	2 cut(s)	40, 713
Cfr13I	GGNCC	3 cut(s)	100, 227, 331
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	4 cut(s)	468, 730, 738, 774
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	3 cut(s)	178, 564, 728
DpnII	GATC	3 cut(s)	176, 562, 726
EaeI	YGGCCR	2 cut(s)	3, 112
EagI	CGGCCG	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	204, 762
Eco47I	GGWCC	2 cut(s)	100, 331
Eco52I	CGGCCG	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	204, 762
ErhI	CCWWGG	2 cut(s)	204, 762
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	471, 733, 741, 777
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	4 cut(s)	467, 729, 737, 773
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	616
FokI	GGATG	2 cut(s)	425, 716
FspBI	CTAG	2 cut(s)	474, 485
FspI	TGCGCA	1 cut(s)	712
GlaI	GCGC	2 cut(s)	39, 712
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	5, 62, 114, 229, 761
HapII	CCGG	2 cut(s)	6, 495
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	40, 713
Hin1II	CATG	4 cut(s)	471, 733, 741, 777
Hin6I	GCGC	2 cut(s)	38, 711
HinP1I	GCGC	2 cut(s)	38, 711
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	3 cut(s)	363, 598, 716
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	2 cut(s)	6, 495
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	3 cut(s)	320, 617, 666
Hpy188I	TCNGA	4 cut(s)	48, 80, 109, 545
Hpy188III	TCNNGA	4 cut(s)	148, 174, 438, 730
Hpy8I	GTNNAC	3 cut(s)	320, 617, 666
Hpy99I	CGWCG	4 cut(s)	52, 89, 92, 113
HpyAV	CCTTC	3 cut(s)	52, 238, 630
HpyCH4III	ACNGT	2 cut(s)	260, 409
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	188, 377, 422, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 288, 479
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	471, 733, 741, 777
HspAI	GCGC	2 cut(s)	38, 711
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	3 cut(s)	176, 562, 726
LmnI	GCTCC	1 cut(s)	17
LweI	GCATC	2 cut(s)	481, 694
MaeI	CTAG	2 cut(s)	474, 485
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	3 cut(s)	178, 564, 728
MboI	GATC	3 cut(s)	176, 562, 726
MboII	GAAGA	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	6 cut(s)	72, 119, 163, 277, 341, 754
MmeI	TCCRAC	4 cut(s)	71, 132, 309, 411
MnlI	CCTC	8 cut(s)	8, 364, 434, 568, 571, 625, 676, 726
MseI	TTAA	3 cut(s)	275, 602, 678
MspI	CCGG	2 cut(s)	6, 495
MspR9I	CCNGG	3 cut(s)	7, 496, 701
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	279, 288, 479
NciI	CCSGG	2 cut(s)	7, 496
NdeII	GATC	3 cut(s)	176, 562, 726
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	4 cut(s)	471, 733, 741, 777
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	634
NsbI	TGCGCA	1 cut(s)	712
NspI	RCATGY	1 cut(s)	741
PaeI	GCATGC	1 cut(s)	741
PagI	TCATGA	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	100, 227, 331
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	275, 602, 678
Sau3AI	GATC	3 cut(s)	176, 562, 726
Sau96I	GGNCC	3 cut(s)	100, 227, 331
ScrFI	CCNGG	3 cut(s)	7, 496, 701
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	481, 694
SinI	GGWCC	2 cut(s)	100, 331
SphI	GCATGC	1 cut(s)	741
Sse9I	AATT	6 cut(s)	72, 119, 163, 277, 341, 754
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	474, 485
StyD4I	CCNGG	3 cut(s)	5, 494, 699
StyI	CCWWGG	2 cut(s)	204, 762
TaaI	ACNGT	2 cut(s)	260, 409
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	561
TasI	AATT	6 cut(s)	72, 119, 163, 277, 341, 754
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	275, 602, 678
Tru9I	TTAA	3 cut(s)	275, 602, 678
TscAI	CASTG	2 cut(s)	265, 451
TseFI	GTSAC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	265, 451
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	100, 331
XapI	RAATTY	2 cut(s)	119, 341
XceI	RCATGY	1 cut(s)	741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	616
XspI	CTAG	2 cut(s)	474, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.