Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Reverse (-)

10181851 .. 10185268

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11520.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCGGGAAAGGAGGAGCAACCCCAAGCACTTACGCGCCGTCTCCGACGACCCAGAAGACCAAATCCCTAATTTTCGGAAACGACGACGTTGATTGGGTCCGCTCCGACGGCCGTGAATTCCACCAATGCCGACCTGCATTTGGGCCAAGAGAGAGTAAGAAGGCAATGATGTACAGTGATATAGGACGCTTAAATTGCGATGTCAGCTATACAACTTTTGCTACCCCAGTTCGTGGACAGGTATATATGTTTGGGTCGGACCACAAAGAATTTTCTTCAATGCTTCATAAAGCTTTAGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTGTTGGAATCTGGAGGCAGTGATTTTCCTGTAATCATATCATGTGCTAGCCTTGCCCTAGCAGATGCTGGGATAATGATGTATGACCTTGTTGCTTCGGTTTCTGTGTGCGTTGTAGTGACGTCCATATCAAAGTTGTTTCCGTCCACTTCGATTGTCGTCGCTTATGGTTTTTCTGTTTTTGGTGTTCAGTCTTGTCTCGGAAAGAACCTTGTCATCGATCCTATTTTGGAGGAGGAAAGCTACCAAGATGGAAGCTTAATGCTGACTTGTATGCCTTCTCGCTATGAGGTCACTCAACTAACTATTACTGGGGAATGGTCAACCCCAAAAGTGAATGAGGTACGACAGATAGCTGATTTATTCTTTGTAGTATCATATGTTGGAATGCAAATATGCCTGGATGCCTGTGCAAAGCTTGCGGTGATCATGAGGGCATGCTTGAAAGGGACTAATTCGACCTTGGAAGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

278

Amino Acids

30.06

Weight (kDa)

5.04

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	103, 779
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	2 cut(s)	3, 112
AcsI	RAATTY	2 cut(s)	119, 272
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	2 cut(s)	176, 702
AfiI	CCNNNNNNNGG	2 cut(s)	143, 236
AgsI	TTSAA	2 cut(s)	282, 802
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	6 cut(s)	210, 296, 600, 615, 713, 775
AluI	AGCT	6 cut(s)	210, 296, 600, 615, 713, 775
Alw26I	GTCTC	2 cut(s)	48, 560
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	3, 112, 146
ApoI	RAATTY	2 cut(s)	119, 272
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	100, 146, 262
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	793
AsuNHI	GCTAGC	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	100, 262
BbsI	GAAGAC	1 cut(s)	65
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	3 cut(s)	25, 99, 127
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	48, 560
BfaI	CTAG	2 cut(s)	405, 416
BfuAI	ACCTGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	7, 758
Bme18I	GGWCC	2 cut(s)	100, 262
BmgT120I	GGNCC	3 cut(s)	100, 146, 262
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	7, 758
BmrI	ACTGGG	2 cut(s)	224, 678
BmsI	GCATC	2 cut(s)	412, 751
BmtI	GCTAGC	1 cut(s)	408
BmuI	ACTGGG	2 cut(s)	224, 678
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	7
Bsa29I	ATCGAT	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 236
Bse1I	ACTGG	2 cut(s)	230, 673
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	758
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	2 cut(s)	349, 766
BseLI	CCNNNNNNNGG	2 cut(s)	143, 236
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	230, 673
BseRI	GAGGAG	2 cut(s)	30, 605
BseX3I	CGGCCG	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	5, 114, 148
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	2 cut(s)	143, 236
BsmAI	GTCTC	2 cut(s)	48, 560
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	820
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	3 cut(s)	5, 114, 148
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	577, 783
BspACI	CCGC	2 cut(s)	103, 779
BspANI	GGCC	3 cut(s)	5, 114, 148
BspDI	ATCGAT	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	230, 673
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	2 cut(s)	577, 783
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	2 cut(s)	179, 340
BstACI	GRCGYC	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	406, 777, 796
BstF5I	GGATG	2 cut(s)	349, 766
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	580, 786
BstMAI	GTCTC	2 cut(s)	48, 560
BstMBI	GATC	2 cut(s)	577, 783
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 198, 207, 410, 776
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	5, 756
BstUI	CGCG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	5, 114, 148
BsuTUI	ATCGAT	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	349, 766
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	184, 382
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	406, 777, 796
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	100, 146, 262
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	175, 701
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	4 cut(s)	399, 787, 795, 831
CviQI	GTAC	2 cut(s)	175, 701
DpnI	GATC	2 cut(s)	579, 785
DpnII	GATC	2 cut(s)	577, 783
EaeI	YGGCCR	2 cut(s)	3, 112
EagI	CGGCCG	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	819
Eco47I	GGWCC	2 cut(s)	100, 262
Eco52I	CGGCCG	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	402, 790, 798, 834
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	4 cut(s)	398, 786, 794, 830
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	783
FokI	GGATG	2 cut(s)	356, 773
FspBI	CTAG	2 cut(s)	405, 416
GlaI	GCGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	5, 114, 148
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	4 cut(s)	402, 790, 798, 834
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	3 cut(s)	294, 613, 773
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	3 cut(s)	239, 504, 681
Hpy188I	TCNGA	5 cut(s)	48, 80, 109, 262, 560
Hpy188III	TCNNGA	2 cut(s)	369, 787
Hpy8I	GTNNAC	3 cut(s)	239, 504, 681
Hpy99I	CGWCG	5 cut(s)	52, 89, 92, 113, 521
HpyAV	CCTTC	2 cut(s)	157, 645
HpyCH4III	ACNGT	2 cut(s)	179, 340
HpyCH4IV	ACGT	2 cut(s)	90, 479
HpyCH4V	TGCA	5 cut(s)	140, 308, 353, 748, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 198, 207, 410, 776
HpySE526I	ACGT	2 cut(s)	90, 479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	402, 790, 798, 834
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	2 cut(s)	577, 783
LmnI	GCTCC	2 cut(s)	17, 110
LweI	GCATC	2 cut(s)	412, 751
MaeI	CTAG	2 cut(s)	405, 416
MaeII	ACGT	2 cut(s)	90, 479
MaeIII	GTNAC	2 cut(s)	475, 649
MalI	GATC	2 cut(s)	579, 785
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	2 cut(s)	577, 783
MboII	GAAGA	2 cut(s)	70, 270
MluCI	AATT	5 cut(s)	72, 119, 196, 272, 811
MmeI	TCCRAC	5 cut(s)	71, 132, 240, 342, 721
MnlI	CCTC	8 cut(s)	8, 295, 365, 583, 586, 640, 691, 783
MseI	TTAA	2 cut(s)	194, 617
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	7, 758
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	111, 198, 207, 410, 776
NciI	CCSGG	1 cut(s)	7
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	2 cut(s)	577, 783
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	402, 790, 798, 834
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	475, 649
NspI	RCATGY	1 cut(s)	798
PaeI	GCATGC	1 cut(s)	798
PagI	TCATGA	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	100, 146, 262
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	176, 702
RsaNI	GTAC	2 cut(s)	175, 701
SaqAI	TTAA	2 cut(s)	194, 617
Sau3AI	GATC	2 cut(s)	577, 783
Sau96I	GGNCC	3 cut(s)	100, 146, 262
ScrFI	CCNGG	2 cut(s)	7, 758
SfaNI	GCATC	2 cut(s)	412, 751
SinI	GGWCC	2 cut(s)	100, 262
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	5 cut(s)	72, 119, 196, 272, 811
SsiI	CCGC	2 cut(s)	103, 779
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	405, 416
StyD4I	CCNGG	2 cut(s)	5, 756
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	2 cut(s)	179, 340
TaiI	ACGT	2 cut(s)	93, 482
TaqI	TCGA	3 cut(s)	509, 576, 815
TasI	AATT	5 cut(s)	72, 119, 196, 272, 811
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	194, 617
Tru9I	TTAA	2 cut(s)	194, 617
TscAI	CASTG	2 cut(s)	184, 382
TseFI	GTSAC	2 cut(s)	475, 649
Tsp45I	GTSAC	2 cut(s)	475, 649
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	2 cut(s)	184, 382
Van91I	CCANNNNNTGG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	100, 262
XapI	RAATTY	2 cut(s)	119, 272
XceI	RCATGY	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	2 cut(s)	405, 416
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.