Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001506

Physical Location & Seq

Genomic Coordinates Reverse (-)

7324806 .. 7328781

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCGGAAAAGGTGGAGCAGCTCCGAGCACGTACTCTCCATCTCCGACGACCCAGAAAACCAAATCACGCATCTTCGGAAACGACGACGTCGATTGGGTTCGATCCGATGGCCGTGAATTCCACCAATGCAGACCTGCCTTTTTCAAGACTGGTGCTGTAAATGCTGCTGCAGGATCTGCTTATGCAGAATTTGGAAATACCAAAGTCATTGTTTCTGTATTTGGGCCAAGAGAGAGTAAGAAGGCAATGATGTACAGTGATATAGGACGTTTAAATTGCAATGTCAGCTATACAACTTTTGCTACTCCAGTTCGTGGACAGGGGTCAGACCACAAGGAGTTTTCTTCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTTCCAAAGACTACAGTGGATGTTTTTGCATTGGTGTTGGAATCTGGGGGAAGTGATCTTCCTGTAGTGATATCATGTGCTAGCCTTGCCCTAGCAGATGCAGGGATAATGATGTATGACCTTGTTACCTCAGTTTCTGTGTCTGGTCTCGGAAAGAACCTTGTCATTGATCCTATTTTGGAGGAGGAAAGCTATCAAGATGGAAGCCTAATGCTTACTTGTATGCCTTCTCGCTACGAGGTCACTCAGCTAACTATTACTGGGGAATGGTCAACCCCAAAAATTAATGAGGGAATGCAAATATGCTTGGATGCCTGCTCAAAACTTGCAGCGGTCATGAGGGCGTGCTTGAAAGGACCTGATTCTACCTTAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

258

Amino Acids

27.51

Weight (kDa)

5.2

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490 AT4G27490
fragaria_vesca	FvH4_1g26690 FvH4_3g31780 FvH4_3g31780
malus_domestica	MD02G1274400.v1.1 MD03G1120700.v1.1 MD09G1244800.v1.1 MD11G1139300.v1.1
prunus_persica	Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104100_v2.0.a1 Prupe.6G104200_v2.0.a1
pyrus_communis	pycom11g11520
rosa_chinensis	RchiOBHm_Chr1g0339161 RchiOBHm_Chr1g0339211 RchiOBHm_Chr1g0339271 RchiOBHm_Chr5g0058571
rosa_laevigata	RLG00000029217 RLG00000029222 RLG00000035234
rosa_multiflora	Rmu_sc0000367.1_g000149 Rmu_sc0001248.1_g000001 Rmu_sc0019779.1_g000001 Rmu_sc0022251.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021880 Rroxscaffold_4G00313400
rosa_rugosa	Rorug01G0143400.1 Rorug01G0143500.1 Rorug05G0316000
rosa_samantha	Rh1AG160200 Rh1BG127000 Rh1BG127200 Rh1CG149500 Rh1CG149900 Rh5AG382300 Rh5BG394100 Rh5CG418000 Rh5DG409300
rosa_wichuraiana	Rw1G013490 Rw5G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	3 cut(s)	99, 184, 557
AcoI	YGGCCR	2 cut(s)	3, 112
AcsI	RAATTY	2 cut(s)	119, 191
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	35, 257
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	148, 351, 745
AluBI	AGCT	5 cut(s)	23, 291, 365, 585, 643
AluI	AGCT	5 cut(s)	23, 291, 365, 585, 643
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	3 cut(s)	99, 184, 557
AlwNI	CAGNNNCTG	2 cut(s)	179, 530
AoxI	GGCC	3 cut(s)	3, 112, 227
ApeKI	GCWGC	4 cut(s)	20, 167, 170, 722
ApoI	RAATTY	2 cut(s)	119, 191
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	227, 749
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	32, 154, 157, 734
BccI	CCATC	3 cut(s)	49, 104, 587
BceAI	ACGGC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	474, 485
BfmI	CTRYAG	3 cut(s)	171, 405, 456
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	21, 168, 171, 723
BlsI	GCNGC	4 cut(s)	22, 169, 172, 724
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	2 cut(s)	227, 749
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	3 cut(s)	81, 481, 694
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	663
BoxI	GACNNNNGTC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	157, 311, 658
Bse3DI	GCAATG	2 cut(s)	255, 289
BseGI	GGATG	2 cut(s)	418, 709
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	2 cut(s)	255, 289
BseMII	CTCAG	2 cut(s)	537, 653
BseNI	ACTGG	3 cut(s)	157, 311, 658
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	4 cut(s)	32, 154, 157, 734
BshFI	GGCC	3 cut(s)	5, 114, 229
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	5, 114, 229
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	104, 176, 448, 562
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	3 cut(s)	5, 114, 229
BspCNI	CTCAG	2 cut(s)	536, 652
BspHI	TCATGA	1 cut(s)	729
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	99, 184, 557
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	255, 289
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	157, 311, 658
BssMI	GATC	4 cut(s)	104, 176, 448, 562
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	260, 409
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	475, 709, 739
BstDEI	CTNAG	3 cut(s)	523, 639, 763
BstF5I	GGATG	2 cut(s)	418, 709
BstKTI	GATC	4 cut(s)	107, 179, 451, 565
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	104, 176, 448, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 179, 288, 479
BstPAI	GACNNNNGTC	1 cut(s)	325
BstSFI	CTRYAG	3 cut(s)	171, 405, 456
BstV1I	GCAGC	4 cut(s)	32, 154, 157, 734
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	5, 114, 229
BtsCI	GGATG	2 cut(s)	418, 709
BtsIMutI	CAGTG	2 cut(s)	265, 414
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	475, 709, 739
CaiI	CAGNNNCTG	2 cut(s)	179, 530
CciI	TCATGA	1 cut(s)	729
Cfr13I	GGNCC	2 cut(s)	227, 749
Csp6I	GTAC	2 cut(s)	34, 256
CviAII	CATG	2 cut(s)	468, 730
CviQI	GTAC	2 cut(s)	34, 256
DdeI	CTNAG	3 cut(s)	523, 639, 763
DpnI	GATC	4 cut(s)	106, 178, 450, 564
DpnII	GATC	4 cut(s)	104, 176, 448, 562
DraI	TTTAAA	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	3, 112
Eco31I	GGTCTC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	465
FaeI	CATG	2 cut(s)	471, 733
FaiI	YATR	9 cut(s)	186, 266, 294, 360, 469, 510, 617, 697, 731
FatI	CATG	2 cut(s)	467, 729
Fnu4HI	GCNGC	4 cut(s)	21, 168, 171, 723
FokI	GGATG	2 cut(s)	425, 716
Fsp4HI	GCNGC	4 cut(s)	21, 168, 171, 723
FspBI	CTAG	2 cut(s)	474, 485
GluI	GCNGC	4 cut(s)	21, 168, 171, 723
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	5, 114, 229
HapII	CCGG	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	471, 733
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	434, 755
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	320, 666
Hpy188I	TCNGA	6 cut(s)	27, 48, 80, 109, 331, 545
Hpy188III	TCNNGA	3 cut(s)	148, 590, 730
Hpy8I	GTNNAC	2 cut(s)	320, 666
Hpy99I	CGWCG	4 cut(s)	52, 89, 92, 95
HpyAV	CCTTC	2 cut(s)	238, 630
HpyCH4III	ACNGT	2 cut(s)	260, 409
HpyCH4IV	ACGT	3 cut(s)	32, 90, 271
HpyCH4V	TGCA	9 cut(s)	132, 173, 188, 282, 377, 422, 494, 691, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 179, 288, 479
HpyF3I	CTNAG	3 cut(s)	523, 639, 763
HpySE526I	ACGT	3 cut(s)	32, 90, 271
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	471, 733
Kzo9I	GATC	4 cut(s)	104, 176, 448, 562
LmnI	GCTCC	2 cut(s)	17, 28
Lsp1109I	GCAGC	4 cut(s)	32, 154, 157, 734
LweI	GCATC	3 cut(s)	81, 481, 694
MaeI	CTAG	2 cut(s)	474, 485
MaeII	ACGT	3 cut(s)	32, 90, 271
MaeIII	GTNAC	2 cut(s)	517, 634
MalI	GATC	4 cut(s)	106, 178, 450, 564
MboI	GATC	4 cut(s)	104, 176, 448, 562
MboII	GAAGA	3 cut(s)	67, 339, 443
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	119, 191, 277, 675
MmeI	TCCRAC	2 cut(s)	71, 411
MnlI	CCTC	7 cut(s)	364, 532, 568, 571, 625, 676, 726
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	275, 678
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	164, 179, 288, 479
NdeII	GATC	4 cut(s)	104, 176, 448, 562
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	2 cut(s)	471, 733
NmuCI	GTSAC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 90
PctI	GAATGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	434, 755
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	22, 169, 172, 724
Ppu21I	YACGTR	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	749
PspPI	GGNCC	2 cut(s)	227, 749
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	179, 530
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	35, 257
RsaNI	GTAC	2 cut(s)	34, 256
SaqAI	TTAA	2 cut(s)	275, 678
SatI	GCNGC	4 cut(s)	21, 168, 171, 723
Sau3AI	GATC	4 cut(s)	104, 176, 448, 562
Sau96I	GGNCC	2 cut(s)	227, 749
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	81, 481, 694
SfcI	CTRYAG	3 cut(s)	171, 405, 456
SinI	GGWCC	1 cut(s)	749
Sse9I	AATT	4 cut(s)	119, 191, 277, 675
SsiI	CCGC	1 cut(s)	725
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	474, 485
TaaI	ACNGT	2 cut(s)	260, 409
TaiI	ACGT	3 cut(s)	35, 93, 274
TaqI	TCGA	2 cut(s)	93, 103
TasI	AATT	4 cut(s)	119, 191, 277, 675
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	434, 755
Tru1I	TTAA	2 cut(s)	275, 678
Tru9I	TTAA	2 cut(s)	275, 678
TscAI	CASTG	2 cut(s)	265, 414
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	4 cut(s)	20, 167, 170, 722
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	265, 414
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	749
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	2 cut(s)	119, 191
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	2 cut(s)	474, 485
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.