Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

13785395 .. 13788516

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGTACACGAAGAAATGGCATTTCCAAGCATCAGCGAGGTGATAAATTTTGTGGTGAAGGGCCAAACTGGATACTAATTGCAGGGGGTGCATTGTTGAGCACATTGTCCATTCGCTTTGGATACAAGCTAAAGCAGTCGCTTGATTCGAAACCTCAATCAAATGGCTCTGCTGGATTAAAACCTAATGGAACATCTGAGAGGCAAAAATCTACAAGCTGTTGCTTACACTCTACCACATCTTCCTGTACACAAAATAATGATTTTTGTTGCTTCCGCTCCATTCCAGGAACTGAGAGTGTGGAAGGAAAAGAGGTGACAAGCGAGCAAATGATATCCGCATCTGACACTTCACTGCCTCTTGTGACAGTTCCTGCTCCATCGAGCAAAGAGAATGGAGTCATGTGGGCAACTTCTCCTGATCGCCTGGAACTTCCCCCAAGACCATACAATCACAATTCAAACTGCTCAGATTCTCCTTGCGTATCTGAAACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAGAAACTAAGGCAGCAGCTGAAGAGACGGGATGACATGATACAGGAAATGCAAGAACAGATTCTAGAGCTGCAAAACTCGTATAACGCACAGACGGCACACTCAAGCCATCTCCAGGCACAGCTAGACACACTGAACAGAGATCTGTTTGAATCAGAAAGAGAAGTTCAAAGACTGAGAAAGGCAATTGCTGATCACAGCGTGGGATGTGGCGCGGACAGCAATGGCAAGACATCTCCGGTTGGACCTTGGAATGGCGGGTTTATGGACAGCGAAAGCAATTATGAGTCACAAGAAAAGAGCCTAAGGGATGGAGAAAGAGTAGAGATGTTGAGAAAGGAAGTGAGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGAAGCTATAAGGAGCAGAAGATTGAGCTTTCGCAGAAGGTAAAAGAGTTGCAGCAGAGACTGGACTCACAGCTCCAAAACTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.37

Weight (kDa)

6.35

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	743
AciI	CCGC	4 cut(s)	277, 339, 743, 786
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	2 cut(s)	7, 250
AfiI	CCNNNNNNNGG	2 cut(s)	643, 782
AgsI	TTSAA	3 cut(s)	462, 680, 698
AjnI	CCWGG	3 cut(s)	286, 426, 642
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	547, 967
AlwNI	CAGNNNCTG	4 cut(s)	293, 374, 547, 976
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	541, 544, 598, 967
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	2 cut(s)	62, 773
AsuHPI	GGTGA	3 cut(s)	53, 68, 328
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	773
AxyI	CCTNAGG	1 cut(s)	833
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	553, 556, 585, 979
BccI	CCATC	4 cut(s)	388, 645, 833, 890
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	3 cut(s)	288, 428, 644
BciVI	GTATCC	2 cut(s)	66, 116
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	547, 967
BfaI	CTAG	2 cut(s)	593, 653
BfuI	GTATCC	2 cut(s)	66, 116
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	4 cut(s)	542, 545, 599, 968
BlsI	GCNGC	4 cut(s)	543, 546, 600, 969
Bme1390I	CCNGG	3 cut(s)	288, 428, 644
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	62, 773
BmrFI	CCNGG	3 cut(s)	288, 428, 644
BmsI	GCATC	2 cut(s)	40, 350
BpmI	CTGGAG	1 cut(s)	626
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	776
BsaWI	WCCGGW	1 cut(s)	766
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 782
Bse1I	ACTGG	2 cut(s)	74, 981
Bse21I	CCTNAGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	757
BseBI	CCWGG	3 cut(s)	288, 428, 644
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	3 cut(s)	565, 740, 844
BseLI	CCNNNNNNNGG	2 cut(s)	643, 782
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	5 cut(s)	189, 285, 483, 513, 695
BseNI	ACTGG	2 cut(s)	74, 981
BseXI	GCAGC	4 cut(s)	553, 556, 585, 979
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	767
BslI	CCNNNNNNNGG	2 cut(s)	643, 782
BsmAI	GTCTC	2 cut(s)	547, 967
BsmBI	CGTCTC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	421, 670, 721
BspACI	CCGC	4 cut(s)	277, 339, 743, 786
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	5 cut(s)	190, 286, 482, 512, 696
BspFNI	CGCG	1 cut(s)	743
BspT104I	TTCGAA	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	74, 981
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	3 cut(s)	421, 670, 721
BssT1I	CCWWGG	1 cut(s)	776
Bst2UI	CCWGG	3 cut(s)	288, 428, 644
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	8 cut(s)	198, 294, 469, 499, 536, 704, 833, 914
BstF5I	GGATG	3 cut(s)	565, 740, 844
BstFNI	CGCG	1 cut(s)	743
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	3 cut(s)	424, 673, 724
BstMAI	GTCTC	2 cut(s)	547, 967
BstMBI	GATC	3 cut(s)	421, 670, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 623, 747
BstNI	CCWGG	3 cut(s)	288, 428, 644
BstSCI	CCNGG	3 cut(s)	286, 426, 642
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	553, 556, 585, 979
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu36I	CCTNAGG	1 cut(s)	833
BsuI	GTATCC	2 cut(s)	66, 116
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	565, 740, 844
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	353, 659
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	4 cut(s)	293, 374, 547, 976
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	62, 773
Csp6I	GTAC	2 cut(s)	6, 249
CviAII	CATG	2 cut(s)	403, 565
CviQI	GTAC	2 cut(s)	6, 249
DdeI	CTNAG	8 cut(s)	198, 294, 469, 499, 536, 704, 833, 914
DpnI	GATC	3 cut(s)	423, 672, 723
DpnII	GATC	3 cut(s)	421, 670, 721
DraIII	CACNNNGTG	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	776
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	833
EcoRII	CCWGG	3 cut(s)	286, 426, 642
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	776
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	2 cut(s)	406, 568
FaiI	YATR	7 cut(s)	404, 448, 566, 612, 794, 813, 924
FatI	CATG	2 cut(s)	402, 564
FauI	CCCGC	1 cut(s)	779
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	542, 545, 599, 968
FokI	GGATG	3 cut(s)	572, 747, 851
Fsp4HI	GCNGC	4 cut(s)	542, 545, 599, 968
FspBI	CTAG	2 cut(s)	593, 653
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	4 cut(s)	542, 545, 599, 968
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	767
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	2 cut(s)	406, 568
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HinfI	GANTC	7 cut(s)	146, 399, 473, 589, 680, 815, 980
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	3 cut(s)	53, 68, 328
Hpy166II	GTNNAC	2 cut(s)	8, 251
Hpy188I	TCNGA	6 cut(s)	199, 346, 472, 490, 502, 685
Hpy188III	TCNNGA	2 cut(s)	419, 593
Hpy8I	GTNNAC	2 cut(s)	8, 251
HpyAV	CCTTC	3 cut(s)	53, 299, 946
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	83, 92, 580, 601, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 623, 747
HpyF3I	CTNAG	8 cut(s)	198, 294, 469, 499, 536, 704, 833, 914
Hsp92II	CATG	2 cut(s)	406, 568
HspAI	GCGC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	421, 670, 721
LmnI	GCTCC	4 cut(s)	284, 382, 928, 993
Lsp1109I	GCAGC	4 cut(s)	553, 556, 585, 979
LweI	GCATC	2 cut(s)	40, 350
MaeI	CTAG	2 cut(s)	593, 653
MaeIII	GTNAC	3 cut(s)	316, 364, 816
MalI	GATC	3 cut(s)	423, 672, 723
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	421, 670, 721
MboII	GAAGA	4 cut(s)	24, 234, 562, 946
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	5 cut(s)	47, 78, 457, 714, 808
MlyI	GAGTC	3 cut(s)	408, 824, 974
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	5 cut(s)	32, 165, 195, 307, 369
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	2 cut(s)	179, 882
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	3 cut(s)	288, 428, 644
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	3 cut(s)	288, 428, 644
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	3 cut(s)	89, 623, 747
NdeII	GATC	3 cut(s)	421, 670, 721
NlaIII	CATG	2 cut(s)	406, 568
NmuCI	GTSAC	3 cut(s)	316, 364, 816
NspV	TTCGAA	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	146, 473, 589, 680
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	543, 546, 600, 969
PleI	GAGTC	3 cut(s)	407, 823, 974
PpsI	GAGTC	3 cut(s)	407, 823, 974
Psp6I	CCWGG	3 cut(s)	286, 426, 642
PspGI	CCWGG	3 cut(s)	286, 426, 642
PspPI	GGNCC	2 cut(s)	62, 773
PstNI	CAGNNNCTG	4 cut(s)	293, 374, 547, 976
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	7, 250
RsaNI	GTAC	2 cut(s)	6, 249
SaqAI	TTAA	2 cut(s)	179, 882
SatI	GCNGC	4 cut(s)	542, 545, 599, 968
Sau3AI	GATC	3 cut(s)	421, 670, 721
Sau96I	GGNCC	2 cut(s)	62, 773
SchI	GAGTC	3 cut(s)	408, 824, 974
ScrFI	CCNGG	3 cut(s)	288, 428, 644
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	40, 350
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	5 cut(s)	47, 78, 457, 714, 808
SsiI	CCGC	4 cut(s)	277, 339, 743, 786
SspMI	CTAG	2 cut(s)	593, 653
StyD4I	CCNGG	3 cut(s)	286, 426, 642
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	149, 383
TasI	AATT	5 cut(s)	47, 78, 457, 714, 808
TatI	WGTACW	2 cut(s)	5, 248
TfiI	GAWTC	4 cut(s)	146, 473, 589, 680
Tru1I	TTAA	2 cut(s)	179, 882
Tru9I	TTAA	2 cut(s)	179, 882
TscAI	CASTG	2 cut(s)	360, 666
TseFI	GTSAC	3 cut(s)	316, 364, 816
TseI	GCWGC	4 cut(s)	541, 544, 598, 967
Tsp45I	GTSAC	3 cut(s)	316, 364, 816
TspRI	CASTG	2 cut(s)	360, 666
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	2 cut(s)	593, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.