Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

30254168 .. 30257291

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G329400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAACCAAAAACAACTGCTGTACCCAGAGCTCAGAAGTCCAAACCATTTCAGGGCGATGGACCTAATTGGCTTCTTATTGCTGGTGGTGCCTTGTTAAGTACACTGTCAATTCGTCTTGGTTACAAGCTGAAGCAAGCACTTGACACAAAGCACCAGGAGAATGCTAGTAATGGAAGTGGAAAATCCTCTGACAGAAGGAAGTGCCGTGTGCACTCAAATGTTTATTCCTTTACACAACAAAGTGATGGCAGTTGCTTTAATTGCATGTCAGGAACTGAGGCCATGATGGAGATGAAGTGCCTGCCCGATGGCCAGATGCTGAGTGAATCTGATGGAGCTCTGCCTCTAGTTAAAGTTCCCACCCCTGAATTTAACAAGGAGAATGGCATTGTCTGGGCATCTTCTCCTGATCGCCTTGAGTTGCCTCCAAAGCCATTCCTCCACTATTCAAACTGCTCAGATTCTCCATGTGTTTCAGAGTCTGGCTCTGACATCTTCAGTAAGCGGGATGTAATACAAAAACTAAGGCAACAATTAAAGAGAAGAGATGACATGATACTAGAGATGCAGGATCAGATTGTAGAACTGCAGAATTCACTGAATGCTCAGCTGGCACATTCAACCCATCTGCAGTCACAACTTGATTCAGCAAACAGGGACTTTTTTGATTCTGAGAGAGAAATTCAAAGGCTTCGGAAGGCAATTGCAGATCACTGTGTGGGACATGCGAGCCCCAACGGCAAATCATCCCCAGTCACTATTTGGCAACCTGAAGCAACAAATGGTCATGCAAATGGGTATCTTGATGGGGAAAGTAATTTTGATGCAACTGAAAAAGGAAGAGGGGATGGGGAGAGGGTTGAGATGCTCAAGAGGGAAGTGGGAGAATTGAAGGAGGTGATAGAAGGAAAGGAGTACTTGCTGCAGAGCTACAAGGTGCAAAAATCAGAGCTCGCTTTGAAAATCAATGAGTTGCAGCAGAGACTGGATTCTCAACTCCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.69

Weight (kDa)

6.47

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	1 cut(s)	582
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	3 cut(s)	371, 595, 684
AcuI	CTGAAG	3 cut(s)	152, 484, 795
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	3 cut(s)	24, 103, 920
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	453, 624, 689, 895, 964
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	6 cut(s)	32, 130, 341, 613, 933, 955
AluI	AGCT	6 cut(s)	32, 130, 341, 613, 933, 955
Alw21I	GWGCWC	4 cut(s)	34, 216, 343, 957
Alw26I	GTCTC	1 cut(s)	979
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	582
AlwNI	CAGNNNCTG	4 cut(s)	278, 322, 485, 988
AoxI	GGCC	2 cut(s)	282, 313
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	925, 979
ApoI	RAATTY	3 cut(s)	371, 595, 684
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	913
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	216
BaeI	ACNNNNGTAYC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	4 cut(s)	34, 343, 737, 957
Bbv12I	GWGCWC	4 cut(s)	34, 216, 343, 957
BbvI	GCAGC	2 cut(s)	912, 991
BccI	CCATC	8 cut(s)	53, 242, 283, 305, 329, 636, 803, 845
BceAI	ACGGC	2 cut(s)	192, 757
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	979
BfaI	CTAG	3 cut(s)	168, 350, 563
BfmI	CTRYAG	3 cut(s)	590, 632, 926
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	2 cut(s)	926, 980
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	2 cut(s)	927, 981
BmcAI	AGTACT	1 cut(s)	920
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	5 cut(s)	309, 410, 558, 817, 858
BmuI	ACTGGG	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu1102I	GCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	440, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	755, 993
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	517, 749, 856
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	6 cut(s)	47, 270, 314, 474, 623, 666
BseNI	ACTGG	2 cut(s)	755, 993
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	912, 991
BshFI	GGCC	2 cut(s)	284, 315
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	4 cut(s)	34, 216, 343, 957
BslFI	GGGAC	2 cut(s)	674, 738
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	979
BsmFI	GGGAC	2 cut(s)	674, 738
BsmI	GAATGC	2 cut(s)	169, 610
BsnI	GGCC	2 cut(s)	284, 315
Bsp1286I	GDGCHC	5 cut(s)	34, 216, 343, 737, 957
Bsp143I	GATC	3 cut(s)	412, 574, 712
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	2 cut(s)	284, 315
BspCNI	CTCAG	6 cut(s)	46, 271, 315, 473, 622, 667
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	3 cut(s)	594, 636, 930
BspPI	GGATC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	755, 993
BssMI	GATC	3 cut(s)	412, 574, 712
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	108, 719
Bst6I	CTCTTC	2 cut(s)	541, 838
BstC8I	GCNNGC	5 cut(s)	138, 305, 615, 733, 957
BstDEI	CTNAG	7 cut(s)	33, 279, 323, 460, 527, 609, 675
BstF5I	GGATG	3 cut(s)	517, 749, 856
BstKTI	GATC	3 cut(s)	415, 577, 715
BstMAI	GTCTC	1 cut(s)	979
BstMBI	GATC	3 cut(s)	412, 574, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 264, 433, 614, 741
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	271, 731
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	3 cut(s)	590, 632, 926
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	912, 991
BsuRI	GGCC	2 cut(s)	284, 315
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	517, 749, 856
BtsIMutI	CAGTG	3 cut(s)	104, 599, 715
Cac8I	GCNNGC	5 cut(s)	138, 305, 615, 733, 957
CaiI	CAGNNNCTG	4 cut(s)	278, 322, 485, 988
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	23, 102, 919
CviAII	CATG	6 cut(s)	268, 286, 471, 556, 728, 791
CviQI	GTAC	3 cut(s)	23, 102, 919
DdeI	CTNAG	7 cut(s)	33, 279, 323, 460, 527, 609, 675
DpnI	GATC	3 cut(s)	414, 576, 714
DpnII	GATC	3 cut(s)	412, 574, 712
DraIII	CACNNNGTG	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	541, 838
EarI	CTCTTC	2 cut(s)	541, 838
Ecl136II	GAGCTC	3 cut(s)	32, 341, 955
Eco24I	GRGCYC	4 cut(s)	34, 343, 737, 957
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	3 cut(s)	32, 341, 955
Eco57I	CTGAAG	3 cut(s)	152, 484, 795
EcoICRI	GAGCTC	3 cut(s)	32, 341, 955
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	156
EcoT38I	GRGCYC	4 cut(s)	34, 343, 737, 957
FaeI	CATG	6 cut(s)	271, 289, 474, 559, 731, 794
FaiI	YATR	6 cut(s)	269, 287, 472, 557, 729, 792
FalI	AAGNNNNNCTT	2 cut(s)	905, 937
FaqI	GGGAC	2 cut(s)	674, 738
FatI	CATG	6 cut(s)	267, 285, 470, 555, 727, 790
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	926, 980
FokI	GGATG	3 cut(s)	524, 736, 863
FriOI	GRGCYC	4 cut(s)	34, 343, 737, 957
Fsp4HI	GCNGC	2 cut(s)	926, 980
FspBI	CTAG	3 cut(s)	168, 350, 563
GluI	GCNGC	2 cut(s)	926, 980
HaeIII	GGCC	2 cut(s)	284, 315
Hin1II	CATG	6 cut(s)	271, 289, 474, 559, 731, 794
HinfI	GANTC	6 cut(s)	329, 464, 482, 647, 671, 992
HphI	GGTGA	1 cut(s)	913
Hpy166II	GTNNAC	2 cut(s)	104, 214
Hpy188III	TCNNGA	4 cut(s)	273, 410, 806, 874
Hpy8I	GTNNAC	2 cut(s)	104, 214
HpyAV	CCTTC	4 cut(s)	192, 694, 889, 902
HpyCH4III	ACNGT	2 cut(s)	108, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 264, 433, 614, 741
HpyF3I	CTNAG	7 cut(s)	33, 279, 323, 460, 527, 609, 675
Hsp92II	CATG	6 cut(s)	271, 289, 474, 559, 731, 794
Kzo9I	GATC	3 cut(s)	412, 574, 712
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	2 cut(s)	912, 991
LweI	GCATC	5 cut(s)	309, 410, 558, 817, 858
MaeI	CTAG	3 cut(s)	168, 350, 563
MaeIII	GTNAC	3 cut(s)	122, 636, 757
MalI	GATC	3 cut(s)	414, 576, 714
MboI	GATC	3 cut(s)	412, 574, 712
MboII	GAAGA	4 cut(s)	396, 490, 558, 855
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	5 cut(s)	34, 216, 343, 737, 957
MlsI	TGGCCA	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	9 cut(s)	199, 274, 357, 438, 452, 839, 852, 870, 892
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	5 cut(s)	98, 261, 354, 375, 539
MslI	CAYNNNNRTG	2 cut(s)	219, 795
Msp20I	TGGCCA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	2 cut(s)	169, 610
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	89, 264, 433, 614, 741
NdeII	GATC	3 cut(s)	412, 574, 712
NlaIII	CATG	6 cut(s)	271, 289, 474, 559, 731, 794
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	636, 757
NspI	RCATGY	2 cut(s)	271, 731
PctI	GAATGC	2 cut(s)	169, 610
PfeI	GAWTC	5 cut(s)	329, 464, 647, 671, 992
PkrI	GCNGC	2 cut(s)	927, 981
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp124BI	GAGCTC	3 cut(s)	34, 343, 957
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	3 cut(s)	594, 636, 930
PstNI	CAGNNNCTG	4 cut(s)	278, 322, 485, 988
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	3 cut(s)	24, 103, 920
RsaNI	GTAC	3 cut(s)	23, 102, 919
RseI	CAYNNNNRTG	2 cut(s)	219, 795
SacI	GAGCTC	3 cut(s)	34, 343, 957
SaqAI	TTAA	5 cut(s)	98, 261, 354, 375, 539
SatI	GCNGC	2 cut(s)	926, 980
Sau3AI	GATC	3 cut(s)	412, 574, 712
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	920
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	5 cut(s)	34, 216, 343, 737, 957
SfaNI	GCATC	5 cut(s)	309, 410, 558, 817, 858
SfcI	CTRYAG	3 cut(s)	590, 632, 926
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	219, 795
SmlI	CTYRAG	2 cut(s)	419, 872
SmoI	CTYRAG	2 cut(s)	419, 872
SsiI	CCGC	1 cut(s)	508
SspI	AATATT	1 cut(s)	1009
SspMI	CTAG	3 cut(s)	168, 350, 563
SstI	GAGCTC	3 cut(s)	34, 343, 957
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	108, 719
TatI	WGTACW	2 cut(s)	101, 918
TfiI	GAWTC	5 cut(s)	329, 464, 647, 671, 992
Tru1I	TTAA	5 cut(s)	98, 261, 354, 375, 539
Tru9I	TTAA	5 cut(s)	98, 261, 354, 375, 539
TscAI	CASTG	3 cut(s)	111, 606, 722
TseFI	GTSAC	2 cut(s)	636, 757
TseI	GCWGC	2 cut(s)	925, 979
Tsp45I	GTSAC	2 cut(s)	636, 757
TspDTI	ATGAA	2 cut(s)	17, 311
TspRI	CASTG	3 cut(s)	111, 606, 722
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	3 cut(s)	371, 595, 684
XceI	RCATGY	2 cut(s)	271, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XspI	CTAG	3 cut(s)	168, 350, 563
ZrmI	AGTACT	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.