Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

25638 .. 27524

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAACCAAAAACTACTGGTGTGCCTAGATCTCAGAAGTCGAAACCTTTTCAGGGTGATGGACCTAATTGGGTTCTTATTGCCGGCGGTGCCTTATTAAGTACGTTATCGATACGTCTTGGCTACAAGCTGAAGCAAGCACTTGACATAAAACAGCAGGAGAATGCTAGTAATGGAAGTGGAAAATCCTCTGACAGAAGGATGCCTGCAGGTTGCCACATGCACTCAAATGTTTATTCCTTTACACAACAAGATGATGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAGCCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTCCTGATCGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGAGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGCTGGCACATTCTGCCCATTTGCAATCGCAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATGTGAGCTCCAACGACAAACTAGCCCCGGCCACTATATGGCAATCTGAAGTAAGAAACGGTCATGGAAATGGGTGTCTTGATGGGGAAAACAATCTTGATGCCTCAGAAAAAGGAAGAGGGAGGAATGGAGGGAGGGTTGAGATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAGCTACAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCAATATTTTGTAGGCACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

38.5

Weight (kDa)

7.13

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	774
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	2 cut(s)	562, 591
AcoI	YGGCCR	2 cut(s)	322, 765
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	3 cut(s)	152, 493, 804
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	2 cut(s)	103, 932
AfiI	CCNNNNNNNGG	2 cut(s)	53, 774
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	462, 550, 907
AluBI	AGCT	6 cut(s)	130, 622, 652, 744, 945, 967
AluI	AGCT	6 cut(s)	130, 622, 652, 744, 945, 967
Alw21I	GWGCWC	2 cut(s)	746, 969
Alw26I	GTCTC	1 cut(s)	991
AlwI	GGATC	2 cut(s)	562, 591
AlwNI	CAGNNNCTG	3 cut(s)	287, 331, 494
AoxI	GGCC	2 cut(s)	322, 765
ApeKI	GCWGC	4 cut(s)	649, 659, 937, 991
ApoI	RAATTY	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	764
AsuHPI	GGTGA	2 cut(s)	68, 373
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	746, 969
Bbv12I	GWGCWC	2 cut(s)	746, 969
BbvCI	CCTCAGC	1 cut(s)	884
BbvI	GCAGC	4 cut(s)	661, 671, 924, 1003
BccI	CCATC	6 cut(s)	53, 251, 292, 338, 812, 914
BcnI	CCSGG	1 cut(s)	764
BcoDI	GTCTC	1 cut(s)	991
BfaI	CTAG	5 cut(s)	27, 168, 572, 758, 1001
BfmI	CTRYAG	2 cut(s)	207, 938
BfuAI	ACCTGC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	4 cut(s)	650, 660, 938, 992
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	4 cut(s)	651, 661, 939, 993
BmcAI	AGTACT	1 cut(s)	932
Bme1390I	CCNGG	1 cut(s)	764
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	91, 349, 369
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	9 cut(s)	192, 318, 408, 419, 423, 567, 646, 826, 870
Bpu10I	CCTNAGC	2 cut(s)	704, 884
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	764
Bsa29I	ATCGAT	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	762
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 858, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 774
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	53, 774
BseMII	CTCAG	7 cut(s)	47, 279, 483, 632, 675, 855, 875
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	901
BseXI	GCAGC	4 cut(s)	661, 671, 924, 1003
BshFI	GGCC	2 cut(s)	324, 767
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	746, 969
BsiSI	CCGG	2 cut(s)	84, 764
BslFI	GGGAC	2 cut(s)	683, 747
BslI	CCNNNNNNNGG	2 cut(s)	53, 774
BsmAI	GTCTC	1 cut(s)	991
BsmFI	GGGAC	2 cut(s)	683, 747
BsmI	GAATGC	2 cut(s)	169, 619
BsnI	GGCC	2 cut(s)	324, 767
Bsp1286I	GDGCHC	2 cut(s)	746, 969
Bsp143I	GATC	5 cut(s)	29, 421, 567, 583, 721
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	324, 767
BspCNI	CTCAG	7 cut(s)	46, 280, 482, 631, 676, 854, 876
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	91, 349, 369
BspMAI	CTGCAG	2 cut(s)	211, 942
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	562, 591
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	5 cut(s)	29, 421, 567, 583, 721
Bst4CI	ACNGT	3 cut(s)	367, 728, 797
Bst6I	CTCTTC	3 cut(s)	545, 550, 847
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	5 cut(s)	85, 138, 207, 314, 624
BstDEI	CTNAG	9 cut(s)	33, 288, 469, 536, 618, 684, 704, 841, 884
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	5 cut(s)	32, 424, 570, 586, 724
BstMAI	GTCTC	1 cut(s)	991
BstMBI	GATC	5 cut(s)	29, 421, 567, 583, 721
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 273, 442, 623, 632, 649
BstNSI	RCATGY	2 cut(s)	223, 740
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	2 cut(s)	207, 938
BstV1I	GCAGC	4 cut(s)	661, 671, 924, 1003
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	324, 767
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	608, 724, 971
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	85, 138, 207, 314, 624
CaiI	CAGNNNCTG	3 cut(s)	287, 331, 494
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	102, 931
CviAII	CATG	6 cut(s)	220, 295, 480, 565, 737, 800
CviQI	GTAC	2 cut(s)	102, 931
DdeI	CTNAG	9 cut(s)	33, 288, 469, 536, 618, 684, 704, 841, 884
DpnI	GATC	5 cut(s)	31, 423, 569, 585, 723
DpnII	GATC	5 cut(s)	29, 421, 567, 583, 721
DraIII	CACNNNGTG	1 cut(s)	730
EaeI	YGGCCR	2 cut(s)	322, 765
Eam1104I	CTCTTC	3 cut(s)	545, 550, 847
EarI	CTCTTC	3 cut(s)	545, 550, 847
Ecl136II	GAGCTC	2 cut(s)	744, 967
Eco24I	GRGCYC	2 cut(s)	746, 969
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	2 cut(s)	744, 967
Eco57I	CTGAAG	3 cut(s)	152, 493, 804
EcoICRI	GAGCTC	2 cut(s)	744, 967
EcoRI	GAATTC	1 cut(s)	604
EcoT38I	GRGCYC	2 cut(s)	746, 969
FaeI	CATG	6 cut(s)	223, 298, 483, 568, 740, 803
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	2 cut(s)	683, 747
FatI	CATG	6 cut(s)	219, 294, 479, 564, 736, 799
Fnu4HI	GCNGC	4 cut(s)	650, 660, 938, 992
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	746, 969
Fsp4HI	GCNGC	4 cut(s)	650, 660, 938, 992
FspBI	CTAG	5 cut(s)	27, 168, 572, 758, 1001
GluI	GCNGC	4 cut(s)	650, 660, 938, 992
HaeIII	GGCC	2 cut(s)	324, 767
HapII	CCGG	2 cut(s)	84, 764
Hin1II	CATG	6 cut(s)	223, 298, 483, 568, 740, 803
HinfI	GANTC	5 cut(s)	338, 473, 491, 680, 1004
HpaII	CCGG	2 cut(s)	84, 764
HphI	GGTGA	2 cut(s)	68, 373
Hpy188III	TCNNGA	4 cut(s)	282, 419, 815, 833
HpyAV	CCTTC	4 cut(s)	192, 457, 703, 901
HpyCH4III	ACNGT	3 cut(s)	367, 728, 797
HpyCH4IV	ACGT	2 cut(s)	104, 115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 273, 442, 623, 632, 649
HpyF3I	CTNAG	9 cut(s)	33, 288, 469, 536, 618, 684, 704, 841, 884
HpySE526I	ACGT	2 cut(s)	104, 115
Hsp92II	CATG	6 cut(s)	223, 298, 483, 568, 740, 803
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	29, 421, 567, 583, 721
LmnI	GCTCC	2 cut(s)	749, 952
Lsp1109I	GCAGC	4 cut(s)	661, 671, 924, 1003
LweI	GCATC	9 cut(s)	192, 318, 408, 419, 423, 567, 646, 826, 870
MaeI	CTAG	5 cut(s)	27, 168, 572, 758, 1001
MaeII	ACGT	2 cut(s)	104, 115
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	5 cut(s)	31, 423, 569, 585, 723
MboI	GATC	5 cut(s)	29, 421, 567, 583, 721
MboII	GAAGA	5 cut(s)	405, 499, 562, 567, 864
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	746, 969
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	7 cut(s)	67, 271, 380, 463, 545, 604, 902
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	771
Mox20I	TGGCCA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	98, 270, 384
MslI	CAYNNNNRTG	2 cut(s)	228, 804
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	2 cut(s)	84, 764
MspR9I	CCNGG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	2 cut(s)	169, 619
MwoI	GCNNNNNNNGC	6 cut(s)	89, 273, 442, 623, 632, 649
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	764
NdeII	GATC	5 cut(s)	29, 421, 567, 583, 721
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	6 cut(s)	223, 298, 483, 568, 740, 803
NlaIV	GGNNCC	3 cut(s)	91, 349, 369
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	223, 740
PciI	ACATGT	1 cut(s)	736
PctI	GAATGC	2 cut(s)	169, 619
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	338, 473, 680, 1004
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	4 cut(s)	651, 661, 939, 993
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PscI	ACATGT	1 cut(s)	736
Psp124BI	GAGCTC	2 cut(s)	746, 969
PspN4I	GGNNCC	3 cut(s)	91, 349, 369
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	2 cut(s)	211, 942
PstNI	CAGNNNCTG	3 cut(s)	287, 331, 494
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	103, 932
RsaNI	GTAC	2 cut(s)	102, 931
RseI	CAYNNNNRTG	2 cut(s)	228, 804
SacI	GAGCTC	2 cut(s)	746, 969
SaqAI	TTAA	3 cut(s)	98, 270, 384
SatI	GCNGC	4 cut(s)	650, 660, 938, 992
Sau3AI	GATC	5 cut(s)	29, 421, 567, 583, 721
Sau96I	GGNCC	1 cut(s)	62
SbfI	CCTGCAGG	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	932
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	764
SdaI	CCTGCAGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	746, 969
SfaNI	GCATC	9 cut(s)	192, 318, 408, 419, 423, 567, 646, 826, 870
SfcI	CTRYAG	2 cut(s)	207, 938
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	228, 804
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse8387I	CCTGCAGG	1 cut(s)	211
Sse9I	AATT	7 cut(s)	67, 271, 380, 463, 545, 604, 902
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	1 cut(s)	1020
SspMI	CTAG	5 cut(s)	27, 168, 572, 758, 1001
SstI	GAGCTC	2 cut(s)	746, 969
StyD4I	CCNGG	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	367, 728, 797
TaiI	ACGT	2 cut(s)	107, 118
TaqI	TCGA	2 cut(s)	41, 110
TasI	AATT	7 cut(s)	67, 271, 380, 463, 545, 604, 902
TatI	WGTACW	1 cut(s)	930
TfiI	GAWTC	4 cut(s)	338, 473, 680, 1004
Tru1I	TTAA	3 cut(s)	98, 270, 384
Tru9I	TTAA	3 cut(s)	98, 270, 384
TscAI	CASTG	3 cut(s)	615, 731, 978
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	649, 659, 937, 991
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	17, 320
TspRI	CASTG	3 cut(s)	615, 731, 978
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	2 cut(s)	223, 740
XspI	CTAG	5 cut(s)	27, 168, 572, 758, 1001
ZrmI	AGTACT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.