Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

27722249 .. 27723192

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCAGGAACTGAGGGCATGATGGAGATGAAGTGCCTGCCCAATGACCAGATGCTGACTGAATCTGATGGTGCCCTGCCTTTAGTCATGGTTCCAGCCCCTGAATTTAACAAGGAGAATGGCTTTGTCTGGGCATCTTCTCCGGATCACCTTGAGTTGCCTCCAAAGCCATTCCTCCACTATTCAAACTGCTCAGATTCTCCGTGTGTTTCAGAATCTGGGTCTGACATCTTCAGTAAGCGGGAAGTCATACAAAAACTGAGGCAACAACTGAAGAGAAGAGATGACATGATCTTAGAGATGCAGGATCAGATTCAAGAGCTGCAGAGTTCGCTGAATGCGCAGCTGGCACATTCTACCAATCTACAGTCACAACTTGATTCAGCAAACAGGGACTTTTTTGATTCGGAGAGAGAAATCCAAAGGCTTAGGAAGGCAATCGCTGACCACTGCGTGGGACATGTGAGCCCCATTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.13

Weight (kDa)

4.94

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	153, 315
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	217, 293
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	186, 317
AluBI	AGCT	2 cut(s)	322, 346
AluI	AGCT	2 cut(s)	322, 346
AlwI	GGATC	2 cut(s)	153, 315
AlwNI	CAGNNNCTG	4 cut(s)	11, 55, 101, 218
Aor13HI	TCCGGA	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	322, 343
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	309, 355
BccI	CCATC	2 cut(s)	16, 62
BfmI	CTRYAG	2 cut(s)	323, 365
BisI	GCNGC	2 cut(s)	323, 344
BlsI	GCNGC	2 cut(s)	324, 345
BmiI	GGNNCC	2 cut(s)	73, 93
BmsI	GCATC	3 cut(s)	42, 143, 291
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	207, 251
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	309, 355
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	407, 471
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	407, 471
BsmI	GAATGC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	76, 470
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	145, 291, 307
BspACI	CCGC	1 cut(s)	241
BspCNI	CTCAG	3 cut(s)	4, 206, 252
BspEI	TCCGGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	73, 93
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	153, 315
BspT107I	GGYRCC	1 cut(s)	71
BssMI	GATC	3 cut(s)	145, 291, 307
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	269, 274
BstC8I	GCNNGC	2 cut(s)	38, 348
BstDEI	CTNAG	5 cut(s)	12, 193, 260, 295, 428
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	148, 294, 310
BstMBI	GATC	3 cut(s)	145, 291, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 331, 340, 347
BstNSI	RCATGY	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	323, 365
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	309, 355
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	38, 348
CaiI	CAGNNNCTG	4 cut(s)	11, 55, 101, 218
CfoI	GCGC	1 cut(s)	343
CviAII	CATG	4 cut(s)	19, 88, 289, 461
CviJI	RGCY	7 cut(s)	98, 123, 169, 322, 346, 427, 468
CviKI_1	RGCY	7 cut(s)	98, 123, 169, 322, 346, 427, 468
DdeI	CTNAG	5 cut(s)	12, 193, 260, 295, 428
DpnI	GATC	3 cut(s)	147, 293, 309
DpnII	GATC	3 cut(s)	145, 291, 307
DraIII	CACNNNGTG	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	269, 274
EarI	CTCTTC	2 cut(s)	269, 274
Eco24I	GRGCYC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	217, 293
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	4 cut(s)	22, 91, 292, 464
FaiI	YATR	5 cut(s)	20, 89, 251, 290, 462
FaqI	GGGAC	2 cut(s)	407, 471
FatI	CATG	4 cut(s)	18, 87, 288, 460
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	323, 344
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	323, 344
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	323, 344
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	22, 91, 292, 464
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	6 cut(s)	62, 197, 215, 313, 380, 404
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	6 cut(s)	67, 196, 214, 226, 312, 409
Hpy188III	TCNNGA	3 cut(s)	6, 143, 317
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	304, 325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 331, 340, 347
HpyF3I	CTNAG	5 cut(s)	12, 193, 260, 295, 428
Hsp92II	CATG	4 cut(s)	22, 91, 292, 464
HspAI	GCGC	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	145, 291, 307
Lsp1109I	GCAGC	2 cut(s)	309, 355
LweI	GCATC	3 cut(s)	42, 143, 291
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	147, 293, 309
MboI	GATC	3 cut(s)	145, 291, 307
MboII	GAAGA	4 cut(s)	129, 223, 286, 291
MhlI	GDGCHC	2 cut(s)	76, 470
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	4 cut(s)	7, 171, 185, 255
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	166, 331, 340, 347
NdeII	GATC	3 cut(s)	145, 291, 307
NlaIII	CATG	4 cut(s)	22, 91, 292, 464
NlaIV	GGNNCC	2 cut(s)	73, 93
NmuCI	GTSAC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	342
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	6 cut(s)	62, 197, 215, 313, 380, 404
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	324, 345
PscI	ACATGT	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	73, 93
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	4 cut(s)	11, 55, 101, 218
PvuII	CAGCTG	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	323, 344
Sau3AI	GATC	3 cut(s)	145, 291, 307
SduI	GDGCHC	2 cut(s)	76, 470
SetI	ASST	3 cut(s)	153, 324, 348
SfaNI	GCATC	3 cut(s)	42, 143, 291
SfcI	CTRYAG	2 cut(s)	323, 365
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	369
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	6 cut(s)	62, 197, 215, 313, 380, 404
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	2 cut(s)	322, 343
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.