Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

1892601 .. 1893829

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCAGAATCTGGGTCTGACATCTTCAGTAAGCGGGAAGTCATACAAAAACTGAGGCAACAACTGAAGAGAAGAGATGACATGATATTAGAGATGCAGGATCAGATTGTAGAGCTGCAGAGTTCACTGAACACGCAGCTGGCACATTCTACCAATCTACAGTCACAACTTGATTCAGCAAACAGGGATTTTTTTGATTCGGAGAGAGAAATCCAAAGGCTTAGGAAGGCAATCGCTGATCACTGTGTGGGACATGTGAGCCCCATTGACAGATCACCCAAGGTCACTATTTGGCAACCTGAAGAAAGAAATGGTCATGTGAATGGATTTCCTGATGGGGAAAGCAACTTTGATGCAACCGAAAGGGGAAGAGGGGATGGAGAGAGGGTTGAGATGCTCAAGAGGGAAGTAGGAGAATTGAAGGAGGTGATAGAAGGAAAGGAATACTTGCTACAAAGCTACAAGGAGCAAAAAGCAGAGTTCTCACTGAAAATCAAAGAGTTACAGCAGAGACTGGATTCTCAACTCCCTAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.85

Weight (kDa)

5.36

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	108
AcuI	CTGAAG	3 cut(s)	10, 86, 321
AdeI	CACNNNGTG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	3 cut(s)	115, 139, 459
AluI	AGCT	3 cut(s)	115, 139, 459
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	2 cut(s)	11, 514
ApeKI	GCWGC	2 cut(s)	115, 136
AsuHPI	GGTGA	2 cut(s)	267, 439
BanII	GRGCYC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	102, 148
BccI	CCATC	2 cut(s)	329, 371
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	505
BfmI	CTRYAG	2 cut(s)	116, 158
BisI	GCNGC	2 cut(s)	116, 137
BlsI	GCNGC	2 cut(s)	117, 138
BmsI	GCATC	3 cut(s)	84, 343, 384
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse1I	ACTGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	102, 148
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	100, 238, 272
BspACI	CCGC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	100, 238, 272
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	162, 245
Bst6I	CTCTTC	3 cut(s)	62, 67, 364
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	53, 221
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	3 cut(s)	103, 241, 275
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	100, 238, 272
BstNSI	RCATGY	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	116, 158
BstV1I	GCAGC	2 cut(s)	102, 148
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	125, 241, 485
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	2 cut(s)	11, 514
CviAII	CATG	3 cut(s)	82, 254, 317
CviJI	RGCY	5 cut(s)	115, 139, 220, 261, 459
CviKI_1	RGCY	5 cut(s)	115, 139, 220, 261, 459
DdeI	CTNAG	2 cut(s)	53, 221
DpnI	GATC	3 cut(s)	102, 240, 274
DpnII	GATC	3 cut(s)	100, 238, 272
DraIII	CACNNNGTG	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	62, 67, 364
EarI	CTCTTC	3 cut(s)	62, 67, 364
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	10, 86, 321
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	85, 257, 320
FaiI	YATR	4 cut(s)	44, 83, 255, 318
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	81, 253, 316
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	116, 137
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	116, 137
GluI	GCNGC	2 cut(s)	116, 137
Hin1II	CATG	3 cut(s)	85, 257, 320
HinfI	GANTC	4 cut(s)	8, 173, 197, 518
HphI	GGTGA	2 cut(s)	267, 439
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	7, 19, 105, 202
Hpy188III	TCNNGA	2 cut(s)	332, 400
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	220, 415, 428
HpyCH4III	ACNGT	2 cut(s)	162, 245
HpyCH4V	TGCA	3 cut(s)	97, 118, 356
HpyF3I	CTNAG	2 cut(s)	53, 221
Hsp92II	CATG	3 cut(s)	85, 257, 320
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	100, 238, 272
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	6 cut(s)	83, 125, 169, 312, 345, 500
Lsp1109I	GCAGC	2 cut(s)	102, 148
LweI	GCATC	3 cut(s)	84, 343, 384
MaeIII	GTNAC	3 cut(s)	162, 283, 501
MalI	GATC	3 cut(s)	102, 240, 274
MboI	GATC	3 cut(s)	100, 238, 272
MboII	GAAGA	5 cut(s)	16, 79, 84, 314, 381
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	1 cut(s)	416
MnlI	CCTC	5 cut(s)	48, 365, 378, 396, 418
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	139
NdeII	GATC	3 cut(s)	100, 238, 272
NlaIII	CATG	3 cut(s)	85, 257, 320
NmuCI	GTSAC	2 cut(s)	162, 283
NspI	RCATGY	1 cut(s)	257
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	4 cut(s)	8, 173, 197, 518
PkrI	GCNGC	2 cut(s)	117, 138
PscI	ACATGT	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	2 cut(s)	11, 514
PvuII	CAGCTG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	321
SatI	GCNGC	2 cut(s)	116, 137
Sau3AI	GATC	3 cut(s)	100, 238, 272
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	117, 141, 285, 301, 429, 461
SfaNI	GCATC	3 cut(s)	84, 343, 384
SfcI	CTRYAG	2 cut(s)	116, 158
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	162, 245
TasI	AATT	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	8, 173, 197, 518
TscAI	CASTG	3 cut(s)	132, 248, 492
TseFI	GTSAC	2 cut(s)	162, 283
TseI	GCWGC	2 cut(s)	115, 136
Tsp45I	GTSAC	2 cut(s)	162, 283
TspRI	CASTG	3 cut(s)	132, 248, 492
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.