Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020692.1

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1569

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020692.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 722 bp

atgaaaccaaaaactactggtgtgcctagatctcagaagtcgaaaccttttcagggtgatggacctaattgggttcttattgccggcggtgccttattaagtacgttatcgatacgtcttggctacaagctgaagcaagcacttgacataaaacagcaggagaatgctagaagtggaaaatcctctgacagaaggatgcctgcaggttgccacatgcactcaaatgtttattcctttacacaacaagatgatggcagttgctttaattgcatttcaggaactgagagcatgatggagatgaagtgcctgcctaatggccagatgctgactgaatctgatggaaccttgcctttggtgacggttccagcccctcaatttaacaaggagaatggcatcatctgggcatcttctcctgatcgccttgagatgcctccaaagcccttcctacaccattcaaattgctcagattctccatgtgtttcagactctggctctgacatcttcagtaagcgggaagtaatacaaaaacttaggcaacaattgaagagaagagatgacatgatcctagagatgcaggatcagattgtagagttgcagaattcactgaatgctcagctggcacattctgcccatttgcaatcacagcttgatgcagcaaatagggacttttttgattctgagagagaaatccaaaggcttaggaaggcgattgcagatcactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.83

Weight (kDa)

7.66

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	87, 511
AclWI	GGATC	2 cut(s)	556, 585
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	152, 487
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	456, 544
AluBI	AGCT	3 cut(s)	130, 616, 646
AluI	AGCT	3 cut(s)	130, 616, 646
AlwI	GGATC	2 cut(s)	556, 585
AlwNI	CAGNNNCTG	3 cut(s)	281, 325, 488
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	68, 367
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	4 cut(s)	53, 245, 286, 332
BfaI	CTAG	3 cut(s)	27, 168, 566
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	1 cut(s)	654
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	91, 343, 363
BmsI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
Bpu10I	CCTNAGC	1 cut(s)	698
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	110
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	5 cut(s)	47, 273, 477, 626, 669
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	665
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	2 cut(s)	169, 613
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	29, 415, 561, 577, 715
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	2 cut(s)	87, 511
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	5 cut(s)	46, 274, 476, 625, 670
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	91, 343, 363
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	556, 585
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	83
BssMI	GATC	5 cut(s)	29, 415, 561, 577, 715
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	539, 544
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	5 cut(s)	85, 138, 201, 308, 618
BstDEI	CTNAG	7 cut(s)	33, 282, 463, 530, 612, 678, 698
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	5 cut(s)	32, 418, 564, 580, 718
BstMBI	GATC	5 cut(s)	29, 415, 561, 577, 715
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	602, 718
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	5 cut(s)	85, 138, 201, 308, 618
CaiI	CAGNNNCTG	3 cut(s)	281, 325, 488
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	4 cut(s)	214, 289, 474, 559
CviJI	RGCY	9 cut(s)	123, 130, 318, 368, 439, 492, 616, 646, 697
CviKI_1	RGCY	9 cut(s)	123, 130, 318, 368, 439, 492, 616, 646, 697
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	7 cut(s)	33, 282, 463, 530, 612, 678, 698
DpnI	GATC	5 cut(s)	31, 417, 563, 579, 717
DpnII	GATC	5 cut(s)	29, 415, 561, 577, 715
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	539, 544
EarI	CTCTTC	2 cut(s)	539, 544
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	152, 487
EcoRI	GAATTC	1 cut(s)	598
FaeI	CATG	4 cut(s)	217, 292, 477, 562
FaiI	YATR	5 cut(s)	149, 215, 290, 475, 560
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	4 cut(s)	213, 288, 473, 558
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	3 cut(s)	27, 168, 566
GluI	GCNGC	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	4 cut(s)	217, 292, 477, 562
HinfI	GANTC	4 cut(s)	332, 467, 485, 674
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	68, 367
Hpy188I	TCNGA	8 cut(s)	36, 187, 337, 466, 484, 496, 582, 679
Hpy188III	TCNNGA	2 cut(s)	276, 413
HpyAV	CCTTC	3 cut(s)	186, 451, 697
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	104, 115
HpyCH4V	TGCA	8 cut(s)	203, 217, 270, 574, 595, 637, 653, 713
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
HpyF3I	CTNAG	7 cut(s)	33, 282, 463, 530, 612, 678, 698
HpySE526I	ACGT	2 cut(s)	104, 115
Hsp92II	CATG	4 cut(s)	217, 292, 477, 562
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	29, 415, 561, 577, 715
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
MaeI	CTAG	3 cut(s)	27, 168, 566
MaeII	ACGT	2 cut(s)	104, 115
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	5 cut(s)	31, 417, 563, 579, 717
MboI	GATC	5 cut(s)	29, 415, 561, 577, 715
MboII	GAAGA	4 cut(s)	399, 493, 556, 561
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	6 cut(s)	67, 265, 374, 457, 539, 598
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	3 cut(s)	193, 381, 441
Mox20I	TGGCCA	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	98, 264, 378
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	169, 613
MwoI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	5 cut(s)	29, 415, 561, 577, 715
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	4 cut(s)	217, 292, 477, 562
NlaIV	GGNNCC	3 cut(s)	91, 343, 363
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	217
PctI	GAATGC	2 cut(s)	169, 613
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	332, 467, 674
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	91, 343, 363
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	3 cut(s)	281, 325, 488
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	616
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	98, 264, 378
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	5 cut(s)	29, 415, 561, 577, 715
Sau96I	GGNCC	1 cut(s)	62
SbfI	CCTGCAGG	1 cut(s)	205
SchI	GAGTC	1 cut(s)	479
SdaI	CCTGCAGG	1 cut(s)	205
SetI	ASST	9 cut(s)	49, 67, 107, 118, 132, 208, 347, 618, 648
SfaNI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse8387I	CCTGCAGG	1 cut(s)	205
Sse9I	AATT	6 cut(s)	67, 265, 374, 457, 539, 598
SsiI	CCGC	2 cut(s)	87, 511
SspMI	CTAG	3 cut(s)	27, 168, 566
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	107, 118
TaqI	TCGA	2 cut(s)	41, 110
TasI	AATT	6 cut(s)	67, 265, 374, 457, 539, 598
TfiI	GAWTC	3 cut(s)	332, 467, 674
Tru1I	TTAA	3 cut(s)	98, 264, 378
Tru9I	TTAA	3 cut(s)	98, 264, 378
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	17, 314
TspRI	CASTG	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	3 cut(s)	27, 168, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.