Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

21510131 .. 21511707

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAACCAAAAACAACTGCTGTTCCTAGAGTTCAGAGATCCAAACCTTTTCAGGGCGATGGACCTAATTGGGTTCTTATTGCTGGTGGTGCCTTGTTAAGTACGTTGTCAATTCGTCTTGGTTACAAGCTAAAGCAAGCGCTTGACACAAAGCCCCAAGAGAATGCTAGTAATGGAAGTGGAAAATCCTCTGACCGAAGGAAGTCTGCAGGTTGCTGTGTGCACTCAAACGTTTATTCCTTTAAACAACAAAATGATGGCGGTTGCTTTAATTGCATGTCAGGAACTGAGGGCATGATGGAGATGAAGTGCCTGCCCAATGACCAGATGCTGGCTGAATCTGATGGAGCCCTGCCTTTAGTCATGGTTCCAGCCCCTGAATTTAACAAGGAGAATGGCATTGTCTGGGCATCTTCTCCTGATCGCCTTGAGTTACCTCCAAAGCCATTCCTCCACTATTCAAACTGCTCAGATTCTCCATGTGTTTCAGAATCTGGGTCCGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTGAGGCAACAACTGAAGAGAAGAGATGACATGATATTAGAGATGCAGGATCAGATTGTAGAGCTGCAGAGTTCACTGAATGCGCAGCTGGCACATTCAACCAATCTACAGTCACAACTTGATTCAGCAAACAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCAATTGCTGATCACTGTGTGGGACATGCGAGCCCCAATGACAGATCATCCCATGTCACTATTTGGCAACCTGAAGAAAGAAATGGTCATGTGAATGGATTTCCTGATGGAGAAAGCAACTTCAATGCAACTGAAAGAGGAAGAGGGGACAAAGAGAGGGTTGAGATGCTCAACAGGGAAGTAGGAGAATTGAAGGAGGTAATGGAAGGAAAGGAATACTTGCTACAGAGCTCCAAGGAGCAAAAAGCAGAGCTTTCGTTGAAAATCAAAGAGTTGCAGCAGAGACTGAATTCTCAACTCCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.15

Weight (kDa)

6.42

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	2 cut(s)	261, 517
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	2 cut(s)	33, 591
AcsI	RAATTY	2 cut(s)	380, 1000
AcuI	CTGAAG	3 cut(s)	493, 569, 804
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	1 cut(s)	103
AfeI	AGCGCT	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	53, 331
AgsI	TTSAA	5 cut(s)	462, 633, 835, 904, 973
AluBI	AGCT	5 cut(s)	130, 598, 622, 942, 964
AluI	AGCT	5 cut(s)	130, 598, 622, 942, 964
Alw21I	GWGCWC	2 cut(s)	225, 944
Alw26I	GTCTC	1 cut(s)	988
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	33, 591
AlwNI	CAGNNNCTG	5 cut(s)	287, 331, 377, 494, 997
Aor51HI	AGCGCT	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	598, 619, 988
ApoI	RAATTY	2 cut(s)	380, 1000
AspLEI	GCGC	2 cut(s)	142, 619
AspS9I	GGNCC	2 cut(s)	62, 498
AvaII	GGWCC	2 cut(s)	62, 498
BaeGI	GKGCMC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	3 cut(s)	352, 746, 944
Bbv12I	GWGCWC	2 cut(s)	225, 944
BbvI	GCAGC	3 cut(s)	585, 631, 1000
BccI	CCATC	5 cut(s)	53, 251, 292, 338, 812
BcgI	CGANNNNNNTGC	2 cut(s)	948, 982
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	988
BfaI	CTAG	2 cut(s)	27, 168
BfmI	CTRYAG	4 cut(s)	207, 599, 641, 935
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	599, 620, 989
BlsI	GCNGC	3 cut(s)	600, 621, 990
Bme18I	GGWCC	2 cut(s)	62, 498
BmgT120I	GGNCC	2 cut(s)	62, 498
BmiI	GGNNCC	4 cut(s)	91, 349, 369, 499
BmsI	GCATC	4 cut(s)	318, 419, 567, 867
Bpu10I	CCTNAGC	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	945
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 331
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	1 cut(s)	758
BseLI	CCNNNNNNNGG	2 cut(s)	53, 331
BseMII	CTCAG	4 cut(s)	279, 483, 527, 675
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	585, 631, 1000
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	225, 944
BslFI	GGGAC	3 cut(s)	683, 747, 872
BslI	CCNNNNNNNGG	2 cut(s)	53, 331
BsmAI	GTCTC	1 cut(s)	988
BsmFI	GGGAC	3 cut(s)	683, 747, 872
BsmI	GAATGC	2 cut(s)	169, 619
Bsp1286I	GDGCHC	4 cut(s)	225, 352, 746, 944
Bsp143I	GATC	5 cut(s)	38, 421, 583, 721, 755
BspACI	CCGC	2 cut(s)	261, 517
BspCNI	CTCAG	4 cut(s)	280, 482, 528, 676
BspLI	GGNNCC	4 cut(s)	91, 349, 369, 499
BspMAI	CTGCAG	2 cut(s)	211, 603
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	33, 591
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	5 cut(s)	38, 421, 583, 721, 755
BssT1I	CCWWGG	1 cut(s)	945
Bst4CI	ACNGT	2 cut(s)	645, 728
Bst6I	CTCTTC	3 cut(s)	545, 550, 847
BstC8I	GCNNGC	5 cut(s)	138, 314, 333, 624, 742
BstDEI	CTNAG	5 cut(s)	288, 469, 536, 684, 704
BstF5I	GGATG	1 cut(s)	758
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 619
BstKTI	GATC	5 cut(s)	41, 424, 586, 724, 758
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	5 cut(s)	38, 421, 583, 721, 755
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 273, 623
BstNSI	RCATGY	2 cut(s)	280, 740
BstSFI	CTRYAG	4 cut(s)	207, 599, 641, 935
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	585, 631, 1000
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	758
BtsIMutI	CAGTG	2 cut(s)	608, 724
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	138, 314, 333, 624, 742
CaiI	CAGNNNCTG	5 cut(s)	287, 331, 377, 494, 997
CfoI	GCGC	2 cut(s)	142, 619
Cfr13I	GGNCC	2 cut(s)	62, 498
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	8 cut(s)	277, 295, 364, 480, 565, 737, 764, 800
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	5 cut(s)	288, 469, 536, 684, 704
DpnI	GATC	5 cut(s)	40, 423, 585, 723, 757
DpnII	GATC	5 cut(s)	38, 421, 583, 721, 755
DraI	TTTAAA	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	545, 550, 847
EarI	CTCTTC	3 cut(s)	545, 550, 847
Ecl136II	GAGCTC	1 cut(s)	942
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	3 cut(s)	352, 746, 944
Eco47I	GGWCC	2 cut(s)	62, 498
Eco47III	AGCGCT	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	942
Eco57I	CTGAAG	3 cut(s)	493, 569, 804
EcoICRI	GAGCTC	1 cut(s)	942
EcoRI	GAATTC	1 cut(s)	1000
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	3 cut(s)	352, 746, 944
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	8 cut(s)	280, 298, 367, 483, 568, 740, 767, 803
FaiI	YATR	8 cut(s)	278, 296, 365, 481, 566, 738, 765, 801
FalI	AAGNNNNNCTT	4 cut(s)	914, 946, 948, 980
FaqI	GGGAC	3 cut(s)	683, 747, 872
FatI	CATG	8 cut(s)	276, 294, 363, 479, 564, 736, 763, 799
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	599, 620, 989
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	3 cut(s)	352, 746, 944
Fsp4HI	GCNGC	3 cut(s)	599, 620, 989
FspBI	CTAG	2 cut(s)	27, 168
FspI	TGCGCA	1 cut(s)	618
GlaI	GCGC	2 cut(s)	141, 618
GluI	GCNGC	3 cut(s)	599, 620, 989
HaeII	RGCGCY	1 cut(s)	143
HhaI	GCGC	2 cut(s)	142, 619
Hin1II	CATG	8 cut(s)	280, 298, 367, 483, 568, 740, 767, 803
Hin6I	GCGC	2 cut(s)	140, 617
HinP1I	GCGC	2 cut(s)	140, 617
HinfI	GANTC	5 cut(s)	338, 473, 491, 656, 680
Hpy166II	GTNNAC	2 cut(s)	223, 608
Hpy188I	TCNGA	8 cut(s)	36, 193, 343, 472, 490, 502, 588, 685
Hpy188III	TCNNGA	3 cut(s)	282, 419, 815
Hpy8I	GTNNAC	2 cut(s)	223, 608
HpyAV	CCTTC	4 cut(s)	192, 703, 898, 911
HpyCH4III	ACNGT	2 cut(s)	645, 728
HpyCH4IV	ACGT	2 cut(s)	104, 231
HpyCH4V	TGCA	7 cut(s)	209, 223, 276, 580, 601, 839, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 273, 623
HpyF3I	CTNAG	5 cut(s)	288, 469, 536, 684, 704
HpySE526I	ACGT	2 cut(s)	104, 231
Hsp92II	CATG	8 cut(s)	280, 298, 367, 483, 568, 740, 767, 803
HspAI	GCGC	2 cut(s)	140, 617
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	38, 421, 583, 721, 755
LmnI	GCTCC	3 cut(s)	347, 947, 949
Lsp1109I	GCAGC	3 cut(s)	585, 631, 1000
LweI	GCATC	4 cut(s)	318, 419, 567, 867
MaeI	CTAG	2 cut(s)	27, 168
MaeII	ACGT	2 cut(s)	104, 231
MaeIII	GTNAC	4 cut(s)	122, 432, 645, 766
MalI	GATC	5 cut(s)	40, 423, 585, 723, 757
MboI	GATC	5 cut(s)	38, 421, 583, 721, 755
MboII	GAAGA	6 cut(s)	405, 499, 562, 567, 797, 864
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	4 cut(s)	225, 352, 746, 944
MluCI	AATT	7 cut(s)	67, 111, 271, 380, 714, 899, 1000
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	9 cut(s)	199, 283, 447, 461, 531, 842, 848, 861, 901
MseI	TTAA	4 cut(s)	98, 243, 270, 384
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	169, 619
MwoI	GCNNNNNNNGC	3 cut(s)	89, 273, 623
NdeII	GATC	5 cut(s)	38, 421, 583, 721, 755
NlaIII	CATG	8 cut(s)	280, 298, 367, 483, 568, 740, 767, 803
NlaIV	GGNNCC	4 cut(s)	91, 349, 369, 499
NmuCI	GTSAC	2 cut(s)	645, 766
NsbI	TGCGCA	1 cut(s)	618
NspI	RCATGY	2 cut(s)	280, 740
PctI	GAATGC	2 cut(s)	169, 619
PfeI	GAWTC	5 cut(s)	338, 473, 491, 656, 680
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	600, 621, 990
Psp124BI	GAGCTC	1 cut(s)	944
Psp1406I	AACGTT	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	91, 349, 369, 499
PspPI	GGNCC	2 cut(s)	62, 498
PstI	CTGCAG	2 cut(s)	211, 603
PstNI	CAGNNNCTG	5 cut(s)	287, 331, 377, 494, 997
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	804
SacI	GAGCTC	1 cut(s)	944
SaqAI	TTAA	4 cut(s)	98, 243, 270, 384
SatI	GCNGC	3 cut(s)	599, 620, 989
Sau3AI	GATC	5 cut(s)	38, 421, 583, 721, 755
Sau96I	GGNCC	2 cut(s)	62, 498
SduI	GDGCHC	4 cut(s)	225, 352, 746, 944
SfaNI	GCATC	4 cut(s)	318, 419, 567, 867
SfcI	CTRYAG	4 cut(s)	207, 599, 641, 935
SinI	GGWCC	2 cut(s)	62, 498
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	7 cut(s)	67, 111, 271, 380, 714, 899, 1000
SsiI	CCGC	2 cut(s)	261, 517
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	2 cut(s)	27, 168
SstI	GAGCTC	1 cut(s)	944
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	2 cut(s)	645, 728
TaiI	ACGT	2 cut(s)	107, 234
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	7 cut(s)	67, 111, 271, 380, 714, 899, 1000
TfiI	GAWTC	5 cut(s)	338, 473, 491, 656, 680
Tru1I	TTAA	4 cut(s)	98, 243, 270, 384
Tru9I	TTAA	4 cut(s)	98, 243, 270, 384
TscAI	CASTG	2 cut(s)	615, 731
TseFI	GTSAC	2 cut(s)	645, 766
TseI	GCWGC	3 cut(s)	598, 619, 988
Tsp45I	GTSAC	2 cut(s)	645, 766
TspDTI	ATGAA	2 cut(s)	17, 320
TspRI	CASTG	2 cut(s)	615, 731
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	62, 498
XapI	RAATTY	2 cut(s)	380, 1000
XceI	RCATGY	2 cut(s)	280, 740
XspI	CTAG	2 cut(s)	27, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.