Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

24213463 .. 24216877

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34310.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCTAGTAATGGTTTGGTACTTAAGTTGCCACCTGCACTCAAATGTTTATTCCTTCACACAACAAGATGACGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAGCCTTGCCTTTGGTGACAGTTCCAGCCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTCCGGATCGCCTTGAGATGCCTCCGAAGCCTTTTCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTGGAGATGCAGGATCAGATTGTGGAGTTGCAGAATTCACTGAATGCTCAGCTGGCACATTCTGCCCATTTGCAATCTCAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAAAGAGAAATCCAAAGGCTTAGGAAGGCAATTGCAGATCACTGTGTGGGACATGTGAGCTCCATCGACAAACCTGTCCAGGCCTCTATATGGCAATCTGAAGTAAGAAGTGGTCATGGAAATCAATGTCTTGATGGGGAAAACAATTTTGATGCCTCAGAAAAAGGAAGAGGGGATGGAGAGAGGGTTGAGATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAGCTATAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.62

Weight (kDa)

5.23

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	42
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	3 cut(s)	243, 376, 405
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	2 cut(s)	307, 618
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	20, 743
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	276, 364, 718
AjnI	CCWGG	2 cut(s)	384, 576
AluBI	AGCT	5 cut(s)	436, 466, 558, 756, 778
AluI	AGCT	5 cut(s)	436, 466, 558, 756, 778
Alw21I	GWGCWC	2 cut(s)	560, 780
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	243, 376, 405
AlwNI	CAGNNNCTG	3 cut(s)	101, 145, 308
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	2 cut(s)	136, 579
ApeKI	GCWGC	3 cut(s)	473, 748, 802
ApoI	RAATTY	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	187
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	560, 780
Bbv12I	GWGCWC	2 cut(s)	560, 780
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	485, 735, 814
BccI	CCATC	6 cut(s)	106, 152, 569, 626, 668, 725
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	386, 578
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	2 cut(s)	5, 812
BfmI	CTRYAG	1 cut(s)	749
BfrI	CTTAAG	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	474, 749, 803
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	475, 750, 804
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	386, 578
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	386, 578
BmsI	GCATC	8 cut(s)	132, 222, 233, 237, 381, 460, 640, 681
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	2 cut(s)	518, 695
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	386, 578
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMII	CTCAG	6 cut(s)	93, 297, 446, 476, 669, 686
BseRI	GAGGAG	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	485, 735, 814
BsgI	GTGCAG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	138, 581
BsiHKAI	GWGCWC	2 cut(s)	560, 780
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	497, 561
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	1 cut(s)	802
BsmFI	GGGAC	2 cut(s)	497, 561
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	138, 581
Bsp1286I	GDGCHC	2 cut(s)	560, 780
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	235, 381, 397, 535
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	138, 581
BspCNI	CTCAG	6 cut(s)	94, 296, 445, 475, 668, 687
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	42
BspPI	GGATC	3 cut(s)	243, 376, 405
BspTI	CTTAAG	1 cut(s)	22
BssMI	GATC	4 cut(s)	235, 381, 397, 535
Bst2UI	CCWGG	2 cut(s)	386, 578
Bst4CI	ACNGT	2 cut(s)	181, 542
Bst6I	CTCTTC	3 cut(s)	359, 364, 661
BstAFI	CTTAAG	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	128, 438
BstDEI	CTNAG	8 cut(s)	102, 283, 350, 432, 462, 518, 655, 695
BstF5I	GGATG	1 cut(s)	679
BstKTI	GATC	4 cut(s)	238, 384, 400, 538
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	4 cut(s)	235, 381, 397, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 256, 437, 446, 463
BstNI	CCWGG	2 cut(s)	386, 578
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	384, 576
BstSFI	CTRYAG	1 cut(s)	749
BstV1I	GCAGC	3 cut(s)	485, 735, 814
BsuRI	GGCC	2 cut(s)	138, 581
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	422, 538, 782
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	128, 438
CaiI	CAGNNNCTG	3 cut(s)	101, 145, 308
Csp6I	GTAC	2 cut(s)	19, 742
CviAII	CATG	5 cut(s)	109, 294, 379, 551, 614
CviQI	GTAC	2 cut(s)	19, 742
DdeI	CTNAG	8 cut(s)	102, 283, 350, 432, 462, 518, 655, 695
DpnI	GATC	4 cut(s)	237, 383, 399, 537
DpnII	GATC	4 cut(s)	235, 381, 397, 535
DraIII	CACNNNGTG	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	359, 364, 661
EarI	CTCTTC	3 cut(s)	359, 364, 661
Ecl136II	GAGCTC	2 cut(s)	558, 778
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	2 cut(s)	560, 780
Eco53kI	GAGCTC	2 cut(s)	558, 778
Eco57I	CTGAAG	2 cut(s)	307, 618
EcoICRI	GAGCTC	2 cut(s)	558, 778
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	384, 576
EcoT38I	GRGCYC	2 cut(s)	560, 780
FaeI	CATG	5 cut(s)	112, 297, 382, 554, 617
FaiI	YATR	8 cut(s)	110, 295, 380, 552, 587, 589, 615, 759
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	497, 561
FatI	CATG	5 cut(s)	108, 293, 378, 550, 613
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	474, 749, 803
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	2 cut(s)	560, 780
Fsp4HI	GCNGC	3 cut(s)	474, 749, 803
FspBI	CTAG	2 cut(s)	5, 812
GluI	GCNGC	3 cut(s)	474, 749, 803
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	138, 581
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	5 cut(s)	112, 297, 382, 554, 617
HinfI	GANTC	5 cut(s)	152, 287, 305, 494, 815
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	9 cut(s)	157, 255, 286, 304, 316, 402, 499, 598, 658
Hpy188III	TCNNGA	3 cut(s)	96, 233, 629
HpyAV	CCTTC	3 cut(s)	64, 517, 712
HpyCH4III	ACNGT	2 cut(s)	181, 542
HpyCH4V	TGCA	9 cut(s)	37, 90, 394, 415, 457, 473, 533, 751, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 256, 437, 446, 463
HpyF3I	CTNAG	8 cut(s)	102, 283, 350, 432, 462, 518, 655, 695
Hsp92II	CATG	5 cut(s)	112, 297, 382, 554, 617
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	235, 381, 397, 535
LmnI	GCTCC	3 cut(s)	161, 563, 763
Lsp1109I	GCAGC	3 cut(s)	485, 735, 814
LweI	GCATC	8 cut(s)	132, 222, 233, 237, 381, 460, 640, 681
MaeI	CTAG	2 cut(s)	5, 812
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	4 cut(s)	237, 383, 399, 537
MboI	GATC	4 cut(s)	235, 381, 397, 535
MboII	GAAGA	5 cut(s)	219, 313, 376, 381, 678
MfeI	CAATTG	2 cut(s)	359, 528
MhlI	GDGCHC	2 cut(s)	560, 780
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	8 cut(s)	85, 194, 277, 359, 418, 528, 643, 713
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	201, 261, 592, 662, 664, 675, 690, 693
Mox20I	TGGCCA	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	23, 84, 198
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	436
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	386, 578
MunI	CAATTG	2 cut(s)	359, 528
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	386, 578
MwoI	GCNNNNNNNGC	5 cut(s)	87, 256, 437, 446, 463
NdeII	GATC	4 cut(s)	235, 381, 397, 535
NlaIII	CATG	5 cut(s)	112, 297, 382, 554, 617
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	152, 287, 494, 815
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	475, 750, 804
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	550
Psp124BI	GAGCTC	2 cut(s)	560, 780
Psp6I	CCWGG	2 cut(s)	384, 576
PspGI	CCWGG	2 cut(s)	384, 576
PspN4I	GGNNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	753
PstNI	CAGNNNCTG	3 cut(s)	101, 145, 308
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	2 cut(s)	20, 743
RsaNI	GTAC	2 cut(s)	19, 742
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	2 cut(s)	560, 780
SaqAI	TTAA	3 cut(s)	23, 84, 198
SatI	GCNGC	3 cut(s)	474, 749, 803
Sau3AI	GATC	4 cut(s)	235, 381, 397, 535
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	386, 578
SduI	GDGCHC	2 cut(s)	560, 780
SetI	ASST	7 cut(s)	36, 438, 468, 560, 574, 758, 780
SfaNI	GCATC	8 cut(s)	132, 222, 233, 237, 381, 460, 640, 681
SfcI	CTRYAG	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	22, 242
SmoI	CTYRAG	2 cut(s)	22, 242
Sse9I	AATT	8 cut(s)	85, 194, 277, 359, 418, 528, 643, 713
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	1 cut(s)	331
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	2 cut(s)	5, 812
SstI	GAGCTC	2 cut(s)	560, 780
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	384, 576
TaaI	ACNGT	2 cut(s)	181, 542
TaqI	TCGA	1 cut(s)	564
TasI	AATT	8 cut(s)	85, 194, 277, 359, 418, 528, 643, 713
TatI	WGTACW	1 cut(s)	741
TfiI	GAWTC	4 cut(s)	152, 287, 494, 815
Tru1I	TTAA	3 cut(s)	23, 84, 198
Tru9I	TTAA	3 cut(s)	23, 84, 198
TscAI	CASTG	3 cut(s)	429, 545, 789
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	3 cut(s)	473, 748, 802
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	3 cut(s)	429, 545, 789
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	2 cut(s)	5, 812
ZrmI	AGTACT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.