Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

68613373 .. 68615240

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAAACCAAAAACTACTGGTGTGCCTAGATCTCAGAAGTCGAAACCTTTTCAGGGTGATGGACCTAATTGGGTTCTTATTGCCGGCGGTGCCTTATTAAGTACGTTATCGATACGTCTTGGCTACAAGCTGAAGCAAGCACTTGACATAAAACAGCAGGAGAATGCTAGAAGTGGAAAATCCTCTGACAGAAGGATGCCTGCAGGTTGCCACATGCACTCAAATGTTTATTCCTTTACACAACAAGATGATGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAGCCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTTCTGATTGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGTCGGCACATTCTGCCCATTTGCAATCGCAGCTTGATGCAGCAAATAGGGACTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATAAAAAGGAAGAGGGGGGATGGAGGGAGGGTTGAAATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAGCTACAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.18

Weight (kDa)

8.88

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	87, 511
AclWI	GGATC	2 cut(s)	556, 585
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	152, 487
AdeI	CACNNNGTG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	103, 818
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	456, 544, 764, 793
AluBI	AGCT	4 cut(s)	130, 646, 831, 853
AluI	AGCT	4 cut(s)	130, 646, 831, 853
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	556, 585
AlwNI	CAGNNNCTG	3 cut(s)	281, 325, 488
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	643, 653, 823, 877
ApoI	RAATTY	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	68, 367
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	855
BbvCI	CCTCAGC	1 cut(s)	770
BbvI	GCAGC	4 cut(s)	655, 665, 810, 889
BccI	CCATC	6 cut(s)	53, 245, 286, 332, 743, 800
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	4 cut(s)	27, 168, 566, 887
BfmI	CTRYAG	2 cut(s)	201, 824
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	4 cut(s)	644, 654, 824, 878
BlsI	GCNGC	4 cut(s)	645, 655, 825, 879
BmcAI	AGTACT	1 cut(s)	818
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	91, 343, 363
BmsI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
Bpu10I	CCTNAGC	2 cut(s)	697, 770
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	110
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 744, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	110
BseGI	GGATG	2 cut(s)	201, 754
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	6 cut(s)	47, 273, 477, 626, 668, 761
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	787
BseXI	GCAGC	4 cut(s)	655, 665, 810, 889
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	677, 740
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	877
BsmFI	GGGAC	2 cut(s)	677, 740
BsmI	GAATGC	2 cut(s)	169, 613
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp143I	GATC	4 cut(s)	29, 561, 577, 714
BspACI	CCGC	2 cut(s)	87, 511
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	6 cut(s)	46, 274, 476, 625, 669, 762
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	91, 343, 363
BspMAI	CTGCAG	2 cut(s)	205, 828
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	556, 585
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	83
BssMI	GATC	4 cut(s)	29, 561, 577, 714
Bst4CI	ACNGT	2 cut(s)	361, 721
Bst6I	CTCTTC	3 cut(s)	539, 544, 734
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	4 cut(s)	85, 138, 201, 308
BstDEI	CTNAG	8 cut(s)	33, 282, 463, 530, 612, 677, 697, 770
BstF5I	GGATG	2 cut(s)	201, 754
BstKTI	GATC	4 cut(s)	32, 564, 580, 717
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	4 cut(s)	29, 561, 577, 714
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	2 cut(s)	201, 824
BstV1I	GCAGC	4 cut(s)	655, 665, 810, 889
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	201, 754
BtsIMutI	CAGTG	3 cut(s)	602, 717, 857
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	85, 138, 201, 308
CaiI	CAGNNNCTG	3 cut(s)	281, 325, 488
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	102, 817
CviAII	CATG	4 cut(s)	214, 289, 474, 559
CviQI	GTAC	2 cut(s)	102, 817
DdeI	CTNAG	8 cut(s)	33, 282, 463, 530, 612, 677, 697, 770
DpnI	GATC	4 cut(s)	31, 563, 579, 716
DpnII	GATC	4 cut(s)	29, 561, 577, 714
DraIII	CACNNNGTG	1 cut(s)	723
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	539, 544, 734
EarI	CTCTTC	3 cut(s)	539, 544, 734
Ecl136II	GAGCTC	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	152, 487
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	855
FaeI	CATG	4 cut(s)	217, 292, 477, 562
FaiI	YATR	6 cut(s)	149, 215, 290, 475, 560, 731
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FaqI	GGGAC	2 cut(s)	677, 740
FatI	CATG	4 cut(s)	213, 288, 473, 558
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	644, 654, 824, 878
FokI	GGATG	2 cut(s)	208, 761
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	4 cut(s)	644, 654, 824, 878
FspBI	CTAG	4 cut(s)	27, 168, 566, 887
GluI	GCNGC	4 cut(s)	644, 654, 824, 878
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	4 cut(s)	217, 292, 477, 562
HinfI	GANTC	5 cut(s)	332, 467, 485, 673, 890
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	68, 367
Hpy188I	TCNGA	9 cut(s)	36, 187, 337, 415, 466, 484, 496, 582, 678
Hpy188III	TCNNGA	1 cut(s)	276
HpyAV	CCTTC	4 cut(s)	186, 451, 696, 787
HpyCH4III	ACNGT	2 cut(s)	361, 721
HpyCH4IV	ACGT	2 cut(s)	104, 115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
HpyF3I	CTNAG	8 cut(s)	33, 282, 463, 530, 612, 677, 697, 770
HpySE526I	ACGT	2 cut(s)	104, 115
Hsp92II	CATG	4 cut(s)	217, 292, 477, 562
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	29, 561, 577, 714
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	4 cut(s)	655, 665, 810, 889
LweI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
MaeI	CTAG	4 cut(s)	27, 168, 566, 887
MaeII	ACGT	2 cut(s)	104, 115
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	31, 563, 579, 716
MboI	GATC	4 cut(s)	29, 561, 577, 714
MboII	GAAGA	6 cut(s)	399, 402, 493, 556, 561, 751
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	855
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 788
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	8 cut(s)	193, 381, 441, 735, 746, 750, 765, 768
Mox20I	TGGCCA	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	98, 264, 378
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	169, 613
MwoI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	4 cut(s)	29, 561, 577, 714
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	4 cut(s)	217, 292, 477, 562
NlaIV	GGNNCC	3 cut(s)	91, 343, 363
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	217
PctI	GAATGC	2 cut(s)	169, 613
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	332, 467, 673, 890
PkrI	GCNGC	4 cut(s)	645, 655, 825, 879
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	855
PspN4I	GGNNCC	3 cut(s)	91, 343, 363
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	2 cut(s)	205, 828
PstNI	CAGNNNCTG	3 cut(s)	281, 325, 488
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	103, 818
RsaNI	GTAC	2 cut(s)	102, 817
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	3 cut(s)	98, 264, 378
SatI	GCNGC	4 cut(s)	644, 654, 824, 878
Sau3AI	GATC	4 cut(s)	29, 561, 577, 714
Sau96I	GGNCC	1 cut(s)	62
SbfI	CCTGCAGG	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	479
SdaI	CCTGCAGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	7 cut(s)	186, 312, 402, 413, 417, 561, 640
SfcI	CTRYAG	2 cut(s)	201, 824
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse8387I	CCTGCAGG	1 cut(s)	205
Sse9I	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 788
SsiI	CCGC	2 cut(s)	87, 511
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	4 cut(s)	27, 168, 566, 887
SstI	GAGCTC	1 cut(s)	855
TaaI	ACNGT	2 cut(s)	361, 721
TaiI	ACGT	2 cut(s)	107, 118
TaqI	TCGA	2 cut(s)	41, 110
TasI	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 788
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	4 cut(s)	332, 467, 673, 890
Tru1I	TTAA	3 cut(s)	98, 264, 378
Tru9I	TTAA	3 cut(s)	98, 264, 378
TscAI	CASTG	3 cut(s)	609, 724, 864
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	643, 653, 823, 877
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	17, 314
TspRI	CASTG	3 cut(s)	609, 724, 864
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	4 cut(s)	27, 168, 566, 887
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.