Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

69790252 .. 69793605

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG447100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAACCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTCCTGATCGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGCTGGCACATTCTGCCCATTTGCAATCGCAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATGTGAGCTCCAACGACAAACTAGCCCCGGCCACTATATGGCAATCTGAAGTAAGAAACGGTCATGGAAATGGATGTCTTGATGGGGAAAACAATCTTGATGCCTCAGAAAAAGGAAGAGGGGGGGATGGAGGGAGGGTTGAAATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAGCTACAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.47

Weight (kDa)

5.44

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	480
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	268, 297
AcoI	YGGCCR	2 cut(s)	28, 471
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	199, 510
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	480
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	168, 256, 584, 613
AluBI	AGCT	5 cut(s)	328, 358, 450, 651, 673
AluI	AGCT	5 cut(s)	328, 358, 450, 651, 673
Alw21I	GWGCWC	2 cut(s)	452, 675
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	2 cut(s)	268, 297
AlwNI	CAGNNNCTG	2 cut(s)	37, 200
AoxI	GGCC	2 cut(s)	28, 471
ApeKI	GCWGC	4 cut(s)	355, 365, 643, 697
ApoI	RAATTY	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	452, 675
Bbv12I	GWGCWC	2 cut(s)	452, 675
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	4 cut(s)	367, 377, 630, 709
BccI	CCATC	4 cut(s)	44, 518, 563, 620
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	3 cut(s)	278, 464, 707
BfmI	CTRYAG	1 cut(s)	644
BisI	GCNGC	4 cut(s)	356, 366, 644, 698
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	4 cut(s)	357, 367, 645, 699
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	55, 75
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	7 cut(s)	24, 114, 125, 129, 273, 352, 532
Bpu10I	CCTNAGC	2 cut(s)	410, 590
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	468
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 564, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	521, 574
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	5 cut(s)	189, 338, 381, 561, 581
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	4 cut(s)	367, 377, 630, 709
BshFI	GGCC	2 cut(s)	30, 473
BsiHKAI	GWGCWC	2 cut(s)	452, 675
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	389, 453
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	389, 453
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	30, 473
Bsp1286I	GDGCHC	2 cut(s)	452, 675
Bsp143I	GATC	4 cut(s)	127, 273, 289, 427
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	30, 473
BspCNI	CTCAG	5 cut(s)	188, 337, 382, 560, 582
BspLI	GGNNCC	2 cut(s)	55, 75
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	2 cut(s)	268, 297
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	4 cut(s)	127, 273, 289, 427
Bst4CI	ACNGT	3 cut(s)	73, 434, 503
Bst6I	CTCTTC	3 cut(s)	251, 256, 553
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	20, 330
BstDEI	CTNAG	7 cut(s)	175, 242, 324, 390, 410, 547, 590
BstF5I	GGATG	2 cut(s)	521, 574
BstKTI	GATC	4 cut(s)	130, 276, 292, 430
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	4 cut(s)	127, 273, 289, 427
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 329, 338, 355
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	644
BstV1I	GCAGC	4 cut(s)	367, 377, 630, 709
BsuRI	GGCC	2 cut(s)	30, 473
BtsCI	GGATG	2 cut(s)	521, 574
BtsIMutI	CAGTG	3 cut(s)	314, 430, 677
Cac8I	GCNNGC	2 cut(s)	20, 330
CaiI	CAGNNNCTG	2 cut(s)	37, 200
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	4 cut(s)	186, 271, 443, 506
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	7 cut(s)	175, 242, 324, 390, 410, 547, 590
DpnI	GATC	4 cut(s)	129, 275, 291, 429
DpnII	GATC	4 cut(s)	127, 273, 289, 427
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	28, 471
Eam1104I	CTCTTC	3 cut(s)	251, 256, 553
EarI	CTCTTC	3 cut(s)	251, 256, 553
Ecl136II	GAGCTC	2 cut(s)	450, 673
Eco24I	GRGCYC	2 cut(s)	452, 675
Eco53kI	GAGCTC	2 cut(s)	450, 673
Eco57I	CTGAAG	2 cut(s)	199, 510
EcoICRI	GAGCTC	2 cut(s)	450, 673
EcoRI	GAATTC	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	452, 675
FaeI	CATG	4 cut(s)	189, 274, 446, 509
FaiI	YATR	6 cut(s)	187, 272, 444, 479, 481, 507
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	389, 453
FatI	CATG	4 cut(s)	185, 270, 442, 505
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	356, 366, 644, 698
FokI	GGATG	2 cut(s)	528, 581
FriOI	GRGCYC	2 cut(s)	452, 675
Fsp4HI	GCNGC	4 cut(s)	356, 366, 644, 698
FspBI	CTAG	3 cut(s)	278, 464, 707
GluI	GCNGC	4 cut(s)	356, 366, 644, 698
HaeIII	GGCC	2 cut(s)	30, 473
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	4 cut(s)	189, 274, 446, 509
HinfI	GANTC	5 cut(s)	44, 179, 197, 386, 710
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	8 cut(s)	49, 178, 196, 208, 294, 391, 490, 550
Hpy188III	TCNNGA	3 cut(s)	125, 521, 539
HpyAV	CCTTC	3 cut(s)	163, 409, 607
HpyCH4III	ACNGT	3 cut(s)	73, 434, 503
HpyCH4V	TGCA	7 cut(s)	286, 307, 349, 365, 425, 646, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 329, 338, 355
HpyF3I	CTNAG	7 cut(s)	175, 242, 324, 390, 410, 547, 590
Hsp92II	CATG	4 cut(s)	189, 274, 446, 509
Kzo9I	GATC	4 cut(s)	127, 273, 289, 427
LmnI	GCTCC	2 cut(s)	455, 658
LpnPI	CCDG	8 cut(s)	32, 44, 97, 138, 186, 272, 314, 483
Lsp1109I	GCAGC	4 cut(s)	367, 377, 630, 709
LweI	GCATC	7 cut(s)	24, 114, 125, 129, 273, 352, 532
MaeI	CTAG	3 cut(s)	278, 464, 707
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	129, 275, 291, 429
MboI	GATC	4 cut(s)	127, 273, 289, 427
MboII	GAAGA	5 cut(s)	111, 205, 268, 273, 570
MfeI	CAATTG	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	452, 675
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	5 cut(s)	86, 169, 251, 310, 608
MluNI	TGGCCA	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	101, 477
MnlI	CCTC	8 cut(s)	93, 153, 554, 556, 566, 570, 585, 588
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	148, 329, 338, 355
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	4 cut(s)	127, 273, 289, 427
NlaIII	CATG	4 cut(s)	189, 274, 446, 509
NlaIV	GGNNCC	2 cut(s)	55, 75
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	446
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	4 cut(s)	44, 179, 386, 710
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	4 cut(s)	357, 367, 645, 699
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	442
Psp124BI	GAGCTC	2 cut(s)	452, 675
PspN4I	GGNNCC	2 cut(s)	55, 75
PstI	CTGCAG	1 cut(s)	648
PstNI	CAGNNNCTG	2 cut(s)	37, 200
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	2 cut(s)	452, 675
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	356, 366, 644, 698
Sau3AI	GATC	4 cut(s)	127, 273, 289, 427
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	452, 675
SetI	ASST	6 cut(s)	59, 330, 360, 452, 653, 675
SfaNI	GCATC	7 cut(s)	24, 114, 125, 129, 273, 352, 532
SfcI	CTRYAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	86, 169, 251, 310, 608
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	3 cut(s)	278, 464, 707
SstI	GAGCTC	2 cut(s)	452, 675
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	73, 434, 503
TasI	AATT	5 cut(s)	86, 169, 251, 310, 608
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	4 cut(s)	44, 179, 386, 710
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	3 cut(s)	321, 437, 684
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	355, 365, 643, 697
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	321, 437, 684
Van91I	CCANNNNNTGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	3 cut(s)	278, 464, 707
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.