Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

2719932 .. 2724077

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1032800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAAACCAAAAACAACTGCTGTGTCAAGAGCTCAGAGATCCAAACCTTTTCAGGGGGATGGACCTAATTGGGTTCTTATTGCTGGTGGTGCCTTGTTAAGTACATTGTCAATTCGTCTTGGTTACAAGCTGAAGCAAGCACTTGACACAAAGCCCCAGGAGAATGCTAGTAATGGAAGTGGAAAATCCTCTGACCAAAGAAAGTCTGCAGGTTGCCGTGTGCACTCAAACGTTTATTCCTTTACACAACAAAATGATGGTGGTTGCTTTAATTGCATGTCAGGAACTGAGGGCATGATGGAGATGAAGTGCCTGCCCAATGACCAAACGCTGACTGAATCCAATGGTGCCCTGCCTTTAGTCATGGTTCCAGCCCCTGGATTTAACAAGGAGAATGGCATTGTCTGGGCATCTTCTCCGGATCGCCTTGAGTTGCCTCCAAAGCCATTTCTCCACTATTCAAACTCCTCAGATTCTCCGTGTGTTTCAGAATCTGGGCAACAACTGAAGAGAAGAGATGACATGATATTAGAGATGCAGGATCAGATTGTAGAGCTGCAGAGTTCACTGAATGCACAGCTGGCACATTCTACCAATCTACAGTCACAACTTGATTCAGCAAACAGGGACTTTTTTGATTCGGAGAGAGAAATCCAAAGGCTGAGGAAGGCAATCGCTGATCACTGTGTTGGACATGTGAGCCCCATTGACAGATCACCCCAGGTCACTATTTGGCAACCTGAAGAAAGAAATGGTCATGTGGATGGATTTCCTGATGGGGAAAGCAACTTTGATGCAACCGAAAGAGGGAGAGGGGATGGAGAGAGGGTTGAGATGCTCAAGAGGGAAGTAGGAGAATTGAAGGAGGTGATAGAAGGAAAGGAATACCTGCTACAAAGCTACAAGGAGCAAAAAGCAGAGTTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTGGATTCTCAACTCCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.38

Weight (kDa)

5.65

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	200, 897
AccB1I	GGYRCC	2 cut(s)	89, 347
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	418
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	3 cut(s)	33, 429, 549
AcuI	CTGAAG	3 cut(s)	152, 527, 762
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	53, 377, 807
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	462, 862
AjnI	CCWGG	3 cut(s)	156, 376, 720
AluBI	AGCT	5 cut(s)	32, 130, 556, 580, 900
AluI	AGCT	5 cut(s)	32, 130, 556, 580, 900
Alw21I	GWGCWC	2 cut(s)	34, 225
Alw26I	GTCTC	1 cut(s)	946
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	33, 429, 549
AlwNI	CAGNNNCTG	4 cut(s)	287, 377, 494, 955
Aor13HI	TCCGGA	1 cut(s)	418
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	556, 946
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	708, 880
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	2 cut(s)	225, 352
BanI	GGYRCC	2 cut(s)	89, 347
BanII	GRGCYC	2 cut(s)	34, 704
Bbv12I	GWGCWC	2 cut(s)	34, 225
BbvCI	CCTCAGC	1 cut(s)	662
BbvI	GCAGC	2 cut(s)	543, 958
BccI	CCATC	6 cut(s)	53, 251, 292, 758, 770, 812
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	3 cut(s)	158, 378, 722
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	946
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	3 cut(s)	207, 557, 599
BfuAI	ACCTGC	2 cut(s)	200, 897
BisI	GCNGC	2 cut(s)	557, 947
BlsI	GCNGC	2 cut(s)	558, 948
Bme1390I	CCNGG	3 cut(s)	158, 378, 722
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	91, 349, 369
BmrFI	CCNGG	3 cut(s)	158, 378, 722
BmsI	GCATC	4 cut(s)	419, 525, 784, 825
Bpu10I	CCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	449, 824
BsaJI	CCNNGG	3 cut(s)	156, 376, 720
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 813, 843
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 377, 807
Bse1I	ACTGG	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	3 cut(s)	158, 378, 722
BseDI	CCNNGG	3 cut(s)	156, 376, 720
BseGI	GGATG	3 cut(s)	64, 769, 823
BseLI	CCNNNNNNNGG	3 cut(s)	53, 377, 807
BseMII	CTCAG	4 cut(s)	47, 279, 483, 653
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	1 cut(s)	457
BseSI	GKGCMC	2 cut(s)	225, 352
BseXI	GCAGC	2 cut(s)	543, 958
BshNI	GGYRCC	2 cut(s)	89, 347
BsiHKAI	GWGCWC	2 cut(s)	34, 225
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	53, 377, 807
BsmAI	GTCTC	1 cut(s)	946
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	2 cut(s)	169, 577
Bsp1286I	GDGCHC	4 cut(s)	34, 225, 352, 704
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	38, 421, 541, 679, 713
BspCNI	CTCAG	4 cut(s)	46, 280, 482, 654
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	91, 349, 369
BspMAI	CTGCAG	2 cut(s)	211, 561
BspMI	ACCTGC	2 cut(s)	200, 897
BspPI	GGATC	3 cut(s)	33, 429, 549
BspT107I	GGYRCC	2 cut(s)	89, 347
BsrI	ACTGG	1 cut(s)	960
BssECI	CCNNGG	3 cut(s)	156, 376, 720
BssMI	GATC	5 cut(s)	38, 421, 541, 679, 713
Bst2UI	CCWGG	3 cut(s)	158, 378, 722
Bst4CI	ACNGT	2 cut(s)	603, 686
Bst6I	CTCTTC	2 cut(s)	503, 508
BstC8I	GCNNGC	3 cut(s)	138, 314, 582
BstDEI	CTNAG	4 cut(s)	33, 288, 469, 662
BstF5I	GGATG	3 cut(s)	64, 769, 823
BstKTI	GATC	5 cut(s)	41, 424, 544, 682, 716
BstMAI	GTCTC	1 cut(s)	946
BstMBI	GATC	5 cut(s)	38, 421, 541, 679, 713
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 273, 442, 581
BstNI	CCWGG	3 cut(s)	158, 378, 722
BstNSI	RCATGY	2 cut(s)	280, 698
BstSCI	CCNGG	3 cut(s)	156, 376, 720
BstSFI	CTRYAG	3 cut(s)	207, 557, 599
BstSLI	GKGCMC	2 cut(s)	225, 352
BstV1I	GCAGC	2 cut(s)	543, 958
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	64, 769, 823
BtsIMutI	CAGTG	3 cut(s)	566, 682, 926
BveI	ACCTGC	2 cut(s)	200, 897
Cac8I	GCNNGC	3 cut(s)	138, 314, 582
CaiI	CAGNNNCTG	4 cut(s)	287, 377, 494, 955
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	6 cut(s)	277, 295, 364, 523, 695, 758
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	4 cut(s)	33, 288, 469, 662
DpnI	GATC	5 cut(s)	40, 423, 543, 681, 715
DpnII	GATC	5 cut(s)	38, 421, 541, 679, 713
Eam1104I	CTCTTC	2 cut(s)	503, 508
EarI	CTCTTC	2 cut(s)	503, 508
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	34, 704
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	3 cut(s)	152, 527, 762
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	3 cut(s)	156, 376, 720
EcoT38I	GRGCYC	2 cut(s)	34, 704
FaeI	CATG	6 cut(s)	280, 298, 367, 526, 698, 761
FaiI	YATR	6 cut(s)	278, 296, 365, 524, 696, 759
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	276, 294, 363, 522, 694, 757
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	557, 947
FokI	GGATG	3 cut(s)	71, 776, 830
FriOI	GRGCYC	2 cut(s)	34, 704
Fsp4HI	GCNGC	2 cut(s)	557, 947
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	557, 947
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	6 cut(s)	280, 298, 367, 526, 698, 761
HinfI	GANTC	6 cut(s)	338, 473, 491, 614, 638, 959
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	708, 880
Hpy166II	GTNNAC	2 cut(s)	223, 566
Hpy188I	TCNGA	6 cut(s)	36, 193, 472, 490, 546, 643
Hpy188III	TCNNGA	5 cut(s)	27, 282, 419, 773, 841
Hpy8I	GTNNAC	2 cut(s)	223, 566
HpyAV	CCTTC	3 cut(s)	661, 856, 869
HpyCH4III	ACNGT	2 cut(s)	603, 686
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	8 cut(s)	209, 223, 276, 538, 559, 575, 797, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 273, 442, 581
HpyF3I	CTNAG	4 cut(s)	33, 288, 469, 662
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	280, 298, 367, 526, 698, 761
Kpn2I	TCCGGA	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	38, 421, 541, 679, 713
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	2 cut(s)	543, 958
LweI	GCATC	4 cut(s)	419, 525, 784, 825
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	122, 603, 724
MalI	GATC	5 cut(s)	40, 423, 543, 681, 715
MboI	GATC	5 cut(s)	38, 421, 541, 679, 713
MboII	GAAGA	4 cut(s)	405, 520, 525, 755
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	4 cut(s)	34, 225, 352, 704
MluCI	AATT	4 cut(s)	67, 111, 271, 857
MmeI	TCCRAC	1 cut(s)	670
MroI	TCCGGA	1 cut(s)	418
MseI	TTAA	3 cut(s)	98, 270, 384
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	158, 378, 722
Mva1269I	GAATGC	2 cut(s)	169, 577
MvaI	CCWGG	3 cut(s)	158, 378, 722
MwoI	GCNNNNNNNGC	4 cut(s)	89, 273, 442, 581
NdeII	GATC	5 cut(s)	38, 421, 541, 679, 713
NlaIII	CATG	6 cut(s)	280, 298, 367, 526, 698, 761
NlaIV	GGNNCC	3 cut(s)	91, 349, 369
NmuCI	GTSAC	2 cut(s)	603, 724
NspI	RCATGY	2 cut(s)	280, 698
PciI	ACATGT	1 cut(s)	694
PctI	GAATGC	2 cut(s)	169, 577
PfeI	GAWTC	6 cut(s)	338, 473, 491, 614, 638, 959
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	558, 948
PscI	ACATGT	1 cut(s)	694
Psp124BI	GAGCTC	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	3 cut(s)	156, 376, 720
PspGI	CCWGG	3 cut(s)	156, 376, 720
PspN4I	GGNNCC	3 cut(s)	91, 349, 369
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	2 cut(s)	211, 561
PstNI	CAGNNNCTG	4 cut(s)	287, 377, 494, 955
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	98, 270, 384
SatI	GCNGC	2 cut(s)	557, 947
Sau3AI	GATC	5 cut(s)	38, 421, 541, 679, 713
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	158, 378, 722
SduI	GDGCHC	4 cut(s)	34, 225, 352, 704
SfaNI	GCATC	4 cut(s)	419, 525, 784, 825
SfcI	CTRYAG	3 cut(s)	207, 557, 599
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	428, 839
SmoI	CTYRAG	2 cut(s)	428, 839
Sse9I	AATT	4 cut(s)	67, 111, 271, 857
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	156, 376, 720
TaaI	ACNGT	2 cut(s)	603, 686
TaiI	ACGT	1 cut(s)	234
TasI	AATT	4 cut(s)	67, 111, 271, 857
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	6 cut(s)	338, 473, 491, 614, 638, 959
Tru1I	TTAA	3 cut(s)	98, 270, 384
Tru9I	TTAA	3 cut(s)	98, 270, 384
TscAI	CASTG	3 cut(s)	573, 689, 933
TseFI	GTSAC	2 cut(s)	603, 724
TseI	GCWGC	2 cut(s)	556, 946
Tsp45I	GTSAC	2 cut(s)	603, 724
TspDTI	ATGAA	2 cut(s)	17, 320
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	3 cut(s)	573, 689, 933
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	2 cut(s)	280, 698
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.