Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

13788766 .. 13791052

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACTACACGAAGAAATGGCGTTTCCAGGCATCAGCGGTTTGAGAGTTTTCGCGGTGAAGGACCAAATTGGATCTTAATTGCTGGGGGTGCTTTGTTGAGTACATTGTCCATTCGTTTTGGCTACAAATTAAAGCAGTCTATTGACTCCAAACCTCCTCATTCCAATGCCACTGGTGGATTAAAACCTAATGGAACAACCGACAGAGGAAGATTTAAGGGCTGCTGCTTGCATTCTAATGCATCACCCTGTGAAAGGAATAATGATTGTTGCTTTCACTGCACTCCCGGAACTGAGAATGGGGAAGGAAATCATGCTACAAATGAGCAAATGGCAGAGTCCAGTACTTCTCTGCCTCTTGTGACAGTTCCTGCTTCATCATATAGCAAAGAGAGTGCAGTCGTATGGGGATCTTCTCCTGACCACCTGGAAGTGCCGATGAAAGCATACCATCAACATTCGACCTGCTCAGATTCTCCTTGCGTATCTGAATCCGGCTCAGACATCTTCAGCAAGCGAGAAGTAATACAGAAACTGAGGCAACAGCTGAAGAGACGTGACGACATGATAGTTGAAATGCAGGAACAGATTCTAGAGCTGCAAAACTCGCTAAACGCCCAGATGGGACACTCTAGCCATATCCAAACACAGCTAGACGCAACAAACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGACTGAGAAAGGCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGGTTGGAGTGGCGATGTGAACAGCGAAAACAACTACGAGTCACCAGAAAATGGAATAAGGGATGGAGAAAGAATAGAGATGTTGAGAAAAGAAGTGGGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGGAGCTATAAGGAGCAGAAAACAGAGCTTTTGCAGAAGGTAAAAGAGTTGCAGCAGAGACTGGACTCGCAGCTCCCAAACATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

36.41

Weight (kDa)

6.32

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	37, 54
AclWI	GGATC	2 cut(s)	80, 418
AcuI	CTGAAG	2 cut(s)	493, 569
AdeI	CACNNNGTG	2 cut(s)	251, 730
AfaI	GTAC	2 cut(s)	103, 346
AfiI	CCNNNNNNNGG	2 cut(s)	255, 800
AgsI	TTSAA	2 cut(s)	575, 680
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	26, 426
AluBI	AGCT	7 cut(s)	547, 598, 652, 853, 894, 916, 961
AluI	AGCT	7 cut(s)	547, 598, 652, 853, 894, 916, 961
Alw26I	GTCTC	3 cut(s)	547, 694, 940
AlwI	GGATC	2 cut(s)	80, 418
AlwNI	CAGNNNCTG	4 cut(s)	371, 535, 703, 949
ApeKI	GCWGC	5 cut(s)	222, 225, 598, 940, 958
Asp700I	GAANNNNTTC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	62, 670
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	4 cut(s)	68, 237, 783, 860
AvaII	GGWCC	2 cut(s)	62, 670
BbvI	GCAGC	5 cut(s)	209, 212, 585, 952, 970
BccI	CCATC	4 cut(s)	459, 616, 806, 863
BciT130I	CCWGG	2 cut(s)	28, 428
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	547, 694, 940
BfaI	CTAG	3 cut(s)	593, 633, 653
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	5 cut(s)	223, 226, 599, 941, 959
BlsI	GCNGC	5 cut(s)	224, 227, 600, 942, 960
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	3 cut(s)	28, 288, 428
Bme18I	GGWCC	2 cut(s)	62, 670
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	62, 670
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	3 cut(s)	28, 288, 428
BmsI	GCATC	2 cut(s)	40, 251
BpuMI	CCSGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 800
Bse1I	ACTGG	3 cut(s)	178, 342, 954
Bse3DI	GCAATG	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	28, 428
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	255, 800
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	5 cut(s)	285, 483, 513, 527, 695
BseNI	ACTGG	3 cut(s)	178, 342, 954
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	5 cut(s)	209, 212, 585, 952, 970
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	265, 417
Bsh1236I	CGCG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	288, 495
BslFI	GGGAC	3 cut(s)	639, 683, 747
BslI	CCNNNNNNNGG	2 cut(s)	255, 800
BsmAI	GTCTC	3 cut(s)	547, 694, 940
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	3 cut(s)	639, 683, 747
BsmI	GAATGC	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	72, 410, 721
BspACI	CCGC	2 cut(s)	37, 54
BspCNI	CTCAG	5 cut(s)	286, 482, 512, 528, 696
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	671
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	80, 418
BsrDI	GCAATG	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	178, 342, 954
BssMI	GATC	3 cut(s)	72, 410, 721
Bst2UI	CCWGG	2 cut(s)	28, 428
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	230, 515
BstDEI	CTNAG	6 cut(s)	294, 469, 499, 536, 704, 887
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	817
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	75, 413, 724
BstMAI	GTCTC	3 cut(s)	547, 694, 940
BstMBI	GATC	3 cut(s)	72, 410, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 279, 607
BstNI	CCWGG	2 cut(s)	28, 428
BstSCI	CCNGG	3 cut(s)	26, 286, 426
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	209, 212, 585, 952, 970
BstX2I	RGATCY	2 cut(s)	72, 410
BstYI	RGATCY	2 cut(s)	72, 410
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	2 cut(s)	277, 724
BtsIMutI	CAGTG	3 cut(s)	171, 277, 724
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	2 cut(s)	230, 515
CaiI	CAGNNNCTG	4 cut(s)	371, 535, 703, 949
Cfr13I	GGNCC	2 cut(s)	62, 670
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	102, 345
CviAII	CATG	2 cut(s)	314, 565
CviQI	GTAC	2 cut(s)	102, 345
DdeI	CTNAG	6 cut(s)	294, 469, 499, 536, 704, 887
DpnI	GATC	3 cut(s)	74, 412, 723
DpnII	GATC	3 cut(s)	72, 410, 721
DraIII	CACNNNGTG	2 cut(s)	251, 730
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	62, 670
Eco57I	CTGAAG	2 cut(s)	493, 569
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	2 cut(s)	26, 426
EcoT22I	ATGCAT	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	2 cut(s)	317, 568
FaiI	YATR	8 cut(s)	315, 382, 384, 406, 448, 566, 639, 897
FaqI	GGGAC	3 cut(s)	639, 683, 747
FatI	CATG	2 cut(s)	313, 564
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	5 cut(s)	223, 226, 599, 941, 959
FokI	GGATG	1 cut(s)	824
Fsp4HI	GCNGC	5 cut(s)	223, 226, 599, 941, 959
FspBI	CTAG	3 cut(s)	593, 633, 653
GluI	GCNGC	5 cut(s)	223, 226, 599, 941, 959
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	2 cut(s)	288, 495
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	2 cut(s)	317, 568
HinfI	GANTC	8 cut(s)	146, 338, 473, 491, 589, 680, 788, 953
HpaII	CCGG	2 cut(s)	288, 495
HphI	GGTGA	4 cut(s)	68, 237, 783, 860
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	4 cut(s)	472, 490, 502, 685
Hpy188III	TCNNGA	3 cut(s)	419, 593, 697
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	3 cut(s)	53, 299, 919
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	8 cut(s)	232, 242, 282, 398, 580, 601, 922, 940
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 279, 607
HpyF3I	CTNAG	6 cut(s)	294, 469, 499, 536, 704, 887
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	2 cut(s)	317, 568
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	72, 410, 721
LmnI	GCTCC	3 cut(s)	891, 901, 966
Lsp1109I	GCAGC	5 cut(s)	209, 212, 585, 952, 970
LweI	GCATC	2 cut(s)	40, 251
MaeI	CTAG	3 cut(s)	593, 633, 653
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	3 cut(s)	361, 557, 789
MalI	GATC	3 cut(s)	74, 412, 723
MboI	GATC	3 cut(s)	72, 410, 721
MboII	GAAGA	5 cut(s)	24, 222, 405, 499, 562
MflI	RGATCY	2 cut(s)	72, 410
MluCI	AATT	3 cut(s)	67, 78, 128
MlyI	GAGTC	4 cut(s)	140, 347, 797, 947
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	5 cut(s)	165, 168, 200, 366, 531
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	5 cut(s)	77, 131, 182, 216, 855
MslI	CAYNNNNRTG	2 cut(s)	165, 237
MspA1I	CMGCKG	2 cut(s)	37, 547
MspI	CCGG	2 cut(s)	288, 495
MspR9I	CCNGG	3 cut(s)	28, 288, 428
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	28, 428
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	89, 279, 607
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	72, 410, 721
NlaIII	CATG	2 cut(s)	317, 568
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	3 cut(s)	361, 557, 789
NsiI	ATGCAT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	473, 491, 589, 680
PflMI	CCANNNNNTGG	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	224, 227, 600, 942, 960
PleI	GAGTC	4 cut(s)	140, 346, 796, 947
PpsI	GAGTC	4 cut(s)	140, 346, 796, 947
PpuMI	RGGWCCY	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	26, 426
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	2 cut(s)	26, 426
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	2 cut(s)	62, 670
PspPPI	RGGWCCY	1 cut(s)	670
PstNI	CAGNNNCTG	4 cut(s)	371, 535, 703, 949
PsuI	RGATCY	2 cut(s)	72, 410
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	103, 346
RsaNI	GTAC	2 cut(s)	102, 345
RseI	CAYNNNNRTG	2 cut(s)	165, 237
SaqAI	TTAA	5 cut(s)	77, 131, 182, 216, 855
SatI	GCNGC	5 cut(s)	223, 226, 599, 941, 959
Sau3AI	GATC	3 cut(s)	72, 410, 721
Sau96I	GGNCC	2 cut(s)	62, 670
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	4 cut(s)	140, 347, 797, 947
ScrFI	CCNGG	3 cut(s)	28, 288, 428
SfaNI	GCATC	2 cut(s)	40, 251
SinI	GGWCC	2 cut(s)	62, 670
SmiMI	CAYNNNNRTG	2 cut(s)	165, 237
Sse9I	AATT	3 cut(s)	67, 78, 128
SsiI	CCGC	2 cut(s)	37, 54
SspMI	CTAG	3 cut(s)	593, 633, 653
StyD4I	CCNGG	3 cut(s)	26, 286, 426
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	67, 78, 128
TatI	WGTACW	2 cut(s)	101, 344
TfiI	GAWTC	4 cut(s)	473, 491, 589, 680
Tru1I	TTAA	5 cut(s)	77, 131, 182, 216, 855
Tru9I	TTAA	5 cut(s)	77, 131, 182, 216, 855
TscAI	CASTG	3 cut(s)	178, 284, 731
TseFI	GTSAC	3 cut(s)	361, 557, 789
TseI	GCWGC	5 cut(s)	222, 225, 598, 940, 958
Tsp45I	GTSAC	3 cut(s)	361, 557, 789
TspDTI	ATGAA	2 cut(s)	366, 455
TspRI	CASTG	3 cut(s)	178, 284, 731
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	2 cut(s)	62, 670
XagI	CCTNNNNNAGG	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	3 cut(s)	593, 633, 653
ZrmI	AGTACT	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.