Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

32566705 .. 32569791

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1239500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAACCAAAAACAACTGCTGTTCCTAGAGTTCAGAGATCCAAACCTTTTCAGGGCGAGGGACCTAATTGGGTTCTTATTGCTGGTGGTGCCTTGTTAAGTACGCTGTCAATTCGTCTTGGTTACAAGCTGAAGCAAGCACTTGACACAAAGCCCCAAGAGAATGCTAGAAGTGGAAAATCCTCTGACCGAAGGAAGTCTGCAGGTTGCTGTGTGCACTCAAATGTTTATTCCTTTACACAACAAAATGATGGCGGTTGCTTTAATTGCATGTCAGGAACTGAGGGCATGATGGAGATGAAGTGCCTGCACAATGACCAGATGCTGGCTGAATCTGATGGAGCCCTGCCTTTAGTCACGGTTCCAGCCCCTGAATTTAACAGGGAGAATGGCATTGTCTGGGCATCTTCTCCTGATCGCCTTGAGTTACGTCCAAAGCCATTCCTCCACTATTCAAACTGCTCAGATTCTCCATGTGTTTCAGAAAGAGATGACATGATATTAGAGATGCAGGATCAGATTGTAGAGCTGCAGAGTTCACTGAATGCGCAGCTGGCACATTCAACCAATCTACAGTCACAACTTGATTCAGCAAATGGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCAATTGCTGATCACTGTGTGGGACATGCGAGCCCCAATGACAGATCATCCCATGTCACTATTTGGCAACCTGAAGAAAGAAATGGTTATGTGAATGGATTTCCTGATGGAGAAAGCAACTTCGATGCAACCGAAAGAGGAAGAGGGGATGAAGAGAGGGTTGAGATGCTCAATAGGGAAGTAGGAGAATTAAAGGAGGTAATGGAAGGAAAGGAATACTTGCTACAGAGCTACAAGGAGCAAAAAGCAGAGCTCTCGTTGAAAATCAAAGAGTTGCAGCAGAGACTGAATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.63

Weight (kDa)

5.41

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	325
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	33, 522
AcsI	RAATTY	2 cut(s)	374, 931
AcuI	CTGAAG	2 cut(s)	152, 735
AdeI	CACNNNGTG	1 cut(s)	661
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	53, 325
AgsI	TTSAA	3 cut(s)	456, 564, 904
AluBI	AGCT	5 cut(s)	130, 529, 553, 873, 895
AluI	AGCT	5 cut(s)	130, 529, 553, 873, 895
Alw21I	GWGCWC	2 cut(s)	219, 897
Alw26I	GTCTC	1 cut(s)	919
Alw44I	GTGCAC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	33, 522
AlwNI	CAGNNNCTG	4 cut(s)	281, 325, 371, 928
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	529, 550, 919
ApoI	RAATTY	2 cut(s)	374, 931
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	3 cut(s)	346, 677, 897
Bbv12I	GWGCWC	2 cut(s)	219, 897
BbvI	GCAGC	3 cut(s)	516, 562, 931
BccI	CCATC	4 cut(s)	245, 286, 332, 743
BcgI	CGANNNNNNTGC	2 cut(s)	879, 913
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	919
BfaI	CTAG	2 cut(s)	27, 168
BfmI	CTRYAG	4 cut(s)	201, 530, 572, 866
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	3 cut(s)	530, 551, 920
BlsI	GCNGC	3 cut(s)	531, 552, 921
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	4 cut(s)	63, 91, 343, 363
BmsI	GCATC	5 cut(s)	312, 413, 498, 757, 798
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 325
BseGI	GGATG	2 cut(s)	689, 796
BseLI	CCNNNNNNNGG	2 cut(s)	53, 325
BseMII	CTCAG	3 cut(s)	273, 477, 606
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	516, 562, 931
BsgI	GTGCAG	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	219, 897
BslFI	GGGAC	3 cut(s)	75, 614, 678
BslI	CCNNNNNNNGG	2 cut(s)	53, 325
BsmAI	GTCTC	1 cut(s)	919
BsmFI	GGGAC	3 cut(s)	75, 614, 678
BsmI	GAATGC	2 cut(s)	169, 550
Bsp1286I	GDGCHC	4 cut(s)	219, 346, 677, 897
Bsp143I	GATC	5 cut(s)	38, 415, 514, 652, 686
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	274, 476, 607
BspLI	GGNNCC	4 cut(s)	63, 91, 343, 363
BspMAI	CTGCAG	2 cut(s)	205, 534
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	33, 522
BspT107I	GGYRCC	1 cut(s)	89
BssMI	GATC	5 cut(s)	38, 415, 514, 652, 686
Bst4CI	ACNGT	3 cut(s)	361, 576, 659
Bst6I	CTCTTC	2 cut(s)	778, 789
BstC8I	GCNNGC	5 cut(s)	138, 308, 327, 555, 673
BstDEI	CTNAG	4 cut(s)	282, 463, 615, 635
BstF5I	GGATG	2 cut(s)	689, 796
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	5 cut(s)	41, 418, 517, 655, 689
BstMAI	GTCTC	1 cut(s)	919
BstMBI	GATC	5 cut(s)	38, 415, 514, 652, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 267, 554
BstNSI	RCATGY	2 cut(s)	274, 671
BstSFI	CTRYAG	4 cut(s)	201, 530, 572, 866
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	516, 562, 931
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	689, 796
BtsIMutI	CAGTG	2 cut(s)	539, 655
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	5 cut(s)	138, 308, 327, 555, 673
CaiI	CAGNNNCTG	4 cut(s)	281, 325, 371, 928
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	6 cut(s)	271, 289, 474, 496, 668, 695
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	4 cut(s)	282, 463, 615, 635
DpnI	GATC	5 cut(s)	40, 417, 516, 654, 688
DpnII	GATC	5 cut(s)	38, 415, 514, 652, 686
DraIII	CACNNNGTG	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	778, 789
EarI	CTCTTC	2 cut(s)	778, 789
Ecl136II	GAGCTC	1 cut(s)	895
Eco24I	GRGCYC	3 cut(s)	346, 677, 897
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	152, 735
EcoICRI	GAGCTC	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	931
EcoT38I	GRGCYC	3 cut(s)	346, 677, 897
FaeI	CATG	6 cut(s)	274, 292, 477, 499, 671, 698
FaiI	YATR	7 cut(s)	272, 290, 475, 497, 669, 696, 732
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	3 cut(s)	75, 614, 678
FatI	CATG	6 cut(s)	270, 288, 473, 495, 667, 694
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	3 cut(s)	530, 551, 920
FokI	GGATG	2 cut(s)	676, 803
FriOI	GRGCYC	3 cut(s)	346, 677, 897
Fsp4HI	GCNGC	3 cut(s)	530, 551, 920
FspBI	CTAG	2 cut(s)	27, 168
FspI	TGCGCA	1 cut(s)	549
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	530, 551, 920
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	6 cut(s)	274, 292, 477, 499, 671, 698
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	4 cut(s)	332, 467, 587, 611
Hpy166II	GTNNAC	2 cut(s)	217, 539
Hpy188I	TCNGA	7 cut(s)	36, 187, 337, 466, 484, 519, 616
Hpy188III	TCNNGA	3 cut(s)	276, 413, 746
Hpy8I	GTNNAC	2 cut(s)	217, 539
HpyAV	CCTTC	3 cut(s)	186, 634, 842
HpyCH4III	ACNGT	3 cut(s)	361, 576, 659
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	8 cut(s)	203, 217, 270, 310, 511, 532, 770, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 267, 554
HpyF3I	CTNAG	4 cut(s)	282, 463, 615, 635
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	6 cut(s)	274, 292, 477, 499, 671, 698
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	5 cut(s)	38, 415, 514, 652, 686
LmnI	GCTCC	2 cut(s)	341, 880
Lsp1109I	GCAGC	3 cut(s)	516, 562, 931
LweI	GCATC	5 cut(s)	312, 413, 498, 757, 798
MaeI	CTAG	2 cut(s)	27, 168
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	5 cut(s)	122, 355, 426, 576, 697
MalI	GATC	5 cut(s)	40, 417, 516, 654, 688
MboI	GATC	5 cut(s)	38, 415, 514, 652, 686
MboII	GAAGA	4 cut(s)	399, 728, 795, 806
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	4 cut(s)	219, 346, 677, 897
MluCI	AATT	7 cut(s)	67, 111, 265, 374, 645, 830, 931
MnlI	CCTC	8 cut(s)	52, 193, 277, 455, 773, 779, 792, 832
MseI	TTAA	4 cut(s)	98, 264, 378, 833
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	553
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	2 cut(s)	169, 550
MwoI	GCNNNNNNNGC	3 cut(s)	89, 267, 554
NdeII	GATC	5 cut(s)	38, 415, 514, 652, 686
NlaIII	CATG	6 cut(s)	274, 292, 477, 499, 671, 698
NlaIV	GGNNCC	4 cut(s)	63, 91, 343, 363
NmuCI	GTSAC	3 cut(s)	355, 576, 697
NsbI	TGCGCA	1 cut(s)	549
NspI	RCATGY	2 cut(s)	274, 671
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PctI	GAATGC	2 cut(s)	169, 550
PfeI	GAWTC	4 cut(s)	332, 467, 587, 611
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	531, 552, 921
PpuMI	RGGWCCY	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	897
Psp5II	RGGWCCY	1 cut(s)	62
PspN4I	GGNNCC	4 cut(s)	63, 91, 343, 363
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PstI	CTGCAG	2 cut(s)	205, 534
PstNI	CAGNNNCTG	4 cut(s)	281, 325, 371, 928
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	897
SaqAI	TTAA	4 cut(s)	98, 264, 378, 833
SatI	GCNGC	3 cut(s)	530, 551, 920
Sau3AI	GATC	5 cut(s)	38, 415, 514, 652, 686
Sau96I	GGNCC	1 cut(s)	62
SduI	GDGCHC	4 cut(s)	219, 346, 677, 897
SfaNI	GCATC	5 cut(s)	312, 413, 498, 757, 798
SfcI	CTRYAG	4 cut(s)	201, 530, 572, 866
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	7 cut(s)	67, 111, 265, 374, 645, 830, 931
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	949
SspMI	CTAG	2 cut(s)	27, 168
SstI	GAGCTC	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	361, 576, 659
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	765
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	7 cut(s)	67, 111, 265, 374, 645, 830, 931
TfiI	GAWTC	4 cut(s)	332, 467, 587, 611
Tru1I	TTAA	4 cut(s)	98, 264, 378, 833
Tru9I	TTAA	4 cut(s)	98, 264, 378, 833
TscAI	CASTG	2 cut(s)	546, 662
TseFI	GTSAC	3 cut(s)	355, 576, 697
TseI	GCWGC	3 cut(s)	529, 550, 919
Tsp45I	GTSAC	3 cut(s)	355, 576, 697
TspDTI	ATGAA	3 cut(s)	17, 314, 807
TspRI	CASTG	2 cut(s)	546, 662
Van91I	CCANNNNNTGG	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	374, 931
XceI	RCATGY	2 cut(s)	274, 671
XspI	CTAG	2 cut(s)	27, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.