Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Reverse (-)

66760451 .. 66764044

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCCTGCAGGTTGCCACATGCACTCAAATGTTTATTCCTTTACACAACAAGATGATGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAGCCCCTCAATTTAGCAAGGAGAATGGCATCATCTGGGCATCTTCTCCTGATCGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGCTGGCACATTCTGCCCATTTGCAATCACAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATGTGAGCTCCAACGACAAACTAGCCCCGGCCACTATATGGCAATCTGAAGTAAGAAACGGTCATGGAAATGGGTGTCTTGATGGGGAAAACAATCTTGATGCCTCAGAAAAAGGAAGAGGGGGGGATGGAGGGAGGGTTGAAATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAACTACAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

30.78

Weight (kDa)

5.31

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	573
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	361, 390
AcoI	YGGCCR	2 cut(s)	121, 564
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	292, 603
AdeI	CACNNNGTG	1 cut(s)	529
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	573
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	4 cut(s)	261, 349, 677, 706
AluBI	AGCT	4 cut(s)	421, 451, 543, 766
AluI	AGCT	4 cut(s)	421, 451, 543, 766
Alw21I	GWGCWC	2 cut(s)	545, 768
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	2 cut(s)	361, 390
AlwNI	CAGNNNCTG	3 cut(s)	86, 130, 293
AoxI	GGCC	2 cut(s)	121, 564
ApeKI	GCWGC	3 cut(s)	458, 736, 790
ApoI	RAATTY	1 cut(s)	403
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	545, 768
Bbv12I	GWGCWC	2 cut(s)	545, 768
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	3 cut(s)	470, 723, 802
BccI	CCATC	6 cut(s)	50, 91, 137, 611, 656, 713
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	3 cut(s)	371, 557, 800
BfmI	CTRYAG	2 cut(s)	6, 737
BisI	GCNGC	3 cut(s)	459, 737, 791
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	3 cut(s)	460, 738, 792
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	148, 168
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	7 cut(s)	117, 207, 218, 222, 366, 445, 625
Bpu10I	CCTNAGC	2 cut(s)	503, 683
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	6 cut(s)	78, 282, 431, 474, 654, 674
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	3 cut(s)	470, 723, 802
BshFI	GGCC	2 cut(s)	123, 566
BsiHKAI	GWGCWC	2 cut(s)	545, 768
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	482, 546
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	790
BsmFI	GGGAC	2 cut(s)	482, 546
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	123, 566
Bsp1286I	GDGCHC	2 cut(s)	545, 768
Bsp143I	GATC	4 cut(s)	220, 366, 382, 520
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	123, 566
BspCNI	CTCAG	6 cut(s)	79, 281, 430, 475, 653, 675
BspLI	GGNNCC	2 cut(s)	148, 168
BspMAI	CTGCAG	2 cut(s)	10, 741
BspPI	GGATC	2 cut(s)	361, 390
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	220, 366, 382, 520
Bst4CI	ACNGT	3 cut(s)	166, 527, 596
Bst6I	CTCTTC	3 cut(s)	344, 349, 646
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	6, 113, 423
BstDEI	CTNAG	8 cut(s)	87, 268, 335, 417, 483, 503, 640, 683
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	4 cut(s)	223, 369, 385, 523
BstMAI	GTCTC	1 cut(s)	790
BstMBI	GATC	4 cut(s)	220, 366, 382, 520
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 241, 422, 431, 448
BstNSI	RCATGY	2 cut(s)	22, 539
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	2 cut(s)	6, 737
BstV1I	GCAGC	3 cut(s)	470, 723, 802
BsuRI	GGCC	2 cut(s)	123, 566
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	3 cut(s)	407, 523, 770
Cac8I	GCNNGC	3 cut(s)	6, 113, 423
CaiI	CAGNNNCTG	3 cut(s)	86, 130, 293
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	6 cut(s)	19, 94, 279, 364, 536, 599
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	8 cut(s)	87, 268, 335, 417, 483, 503, 640, 683
DpnI	GATC	4 cut(s)	222, 368, 384, 522
DpnII	GATC	4 cut(s)	220, 366, 382, 520
DraIII	CACNNNGTG	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	121, 564
Eam1104I	CTCTTC	3 cut(s)	344, 349, 646
EarI	CTCTTC	3 cut(s)	344, 349, 646
Ecl136II	GAGCTC	2 cut(s)	543, 766
Eco24I	GRGCYC	2 cut(s)	545, 768
Eco53kI	GAGCTC	2 cut(s)	543, 766
Eco57I	CTGAAG	2 cut(s)	292, 603
EcoICRI	GAGCTC	2 cut(s)	543, 766
EcoRI	GAATTC	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	545, 768
FaeI	CATG	6 cut(s)	22, 97, 282, 367, 539, 602
FaiI	YATR	8 cut(s)	20, 95, 280, 365, 537, 572, 574, 600
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	2 cut(s)	482, 546
FatI	CATG	6 cut(s)	18, 93, 278, 363, 535, 598
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	459, 737, 791
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	2 cut(s)	545, 768
Fsp4HI	GCNGC	3 cut(s)	459, 737, 791
FspBI	CTAG	3 cut(s)	371, 557, 800
GluI	GCNGC	3 cut(s)	459, 737, 791
HaeIII	GGCC	2 cut(s)	123, 566
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	6 cut(s)	22, 97, 282, 367, 539, 602
HinfI	GANTC	5 cut(s)	137, 272, 290, 479, 803
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	8 cut(s)	142, 271, 289, 301, 387, 484, 583, 643
Hpy188III	TCNNGA	4 cut(s)	81, 218, 614, 632
HpyAV	CCTTC	3 cut(s)	256, 502, 700
HpyCH4III	ACNGT	3 cut(s)	166, 527, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 241, 422, 431, 448
HpyF3I	CTNAG	8 cut(s)	87, 268, 335, 417, 483, 503, 640, 683
Hsp92II	CATG	6 cut(s)	22, 97, 282, 367, 539, 602
Kzo9I	GATC	4 cut(s)	220, 366, 382, 520
LmnI	GCTCC	2 cut(s)	548, 751
Lsp1109I	GCAGC	3 cut(s)	470, 723, 802
LweI	GCATC	7 cut(s)	117, 207, 218, 222, 366, 445, 625
MaeI	CTAG	3 cut(s)	371, 557, 800
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	4 cut(s)	222, 368, 384, 522
MboI	GATC	4 cut(s)	220, 366, 382, 520
MboII	GAAGA	5 cut(s)	204, 298, 361, 366, 663
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	545, 768
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	6 cut(s)	70, 179, 262, 344, 403, 701
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	8 cut(s)	186, 246, 647, 649, 659, 663, 678, 681
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	27, 603
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	418
MwoI	GCNNNNNNNGC	5 cut(s)	72, 241, 422, 431, 448
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	4 cut(s)	220, 366, 382, 520
NlaIII	CATG	6 cut(s)	22, 97, 282, 367, 539, 602
NlaIV	GGNNCC	2 cut(s)	148, 168
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	22, 539
PciI	ACATGT	1 cut(s)	535
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	137, 272, 479, 803
PflMI	CCANNNNNTGG	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	460, 738, 792
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	535
Psp124BI	GAGCTC	2 cut(s)	545, 768
PspN4I	GGNNCC	2 cut(s)	148, 168
PstI	CTGCAG	2 cut(s)	10, 741
PstNI	CAGNNNCTG	3 cut(s)	86, 130, 293
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	2 cut(s)	27, 603
SacI	GAGCTC	2 cut(s)	545, 768
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	459, 737, 791
Sau3AI	GATC	4 cut(s)	220, 366, 382, 520
SbfI	CCTGCAGG	1 cut(s)	10
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	563
SdaI	CCTGCAGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	545, 768
SetI	ASST	6 cut(s)	13, 152, 423, 453, 545, 768
SfaNI	GCATC	7 cut(s)	117, 207, 218, 222, 366, 445, 625
SfcI	CTRYAG	2 cut(s)	6, 737
SmiMI	CAYNNNNRTG	2 cut(s)	27, 603
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse8387I	CCTGCAGG	1 cut(s)	10
Sse9I	AATT	6 cut(s)	70, 179, 262, 344, 403, 701
SsiI	CCGC	1 cut(s)	316
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	3 cut(s)	371, 557, 800
SstI	GAGCTC	2 cut(s)	545, 768
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	3 cut(s)	166, 527, 596
TasI	AATT	6 cut(s)	70, 179, 262, 344, 403, 701
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	4 cut(s)	137, 272, 479, 803
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	3 cut(s)	414, 530, 777
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	458, 736, 790
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	3 cut(s)	414, 530, 777
Van91I	CCANNNNNTGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	2 cut(s)	22, 539
XspI	CTAG	3 cut(s)	371, 557, 800
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.