Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001906

Physical Location & Seq

Genomic Coordinates Forward (+)

68541114 .. 68546647

Gene Structure 5534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAACCAAAAACTACTGGTGTGCCTAGATCTCAGAAGTCGAAACCTTTTCAGGGTGATGGACCTAATTGGGTTCTTATTGCCGGCGGTGCCTTATTAAGTACGTTATCGATACGTCTTGGCTACAAGCTGAAGCAAGCACTTGACATAAAACAGCAGGAGAATGCTAGAAGTGGAAAATCCTCTGACAGAAGGATGCCTGCAGGTTGCCACATGCACTCAAATGCTTATTCCTTTACACAACAAGATGATGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAGCCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTTCTGATTGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGTCGGCACATTCTGCCCATTTGCAATCGCAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATGTGAGCTCTAACGACAAACTAGCCCCGGCCACTATATGGCAATCTGAAGTAAGAAACGGTCATGGAAATGGATGTCTTGATGGGGAAAACAATCTTGATGCCTCAGAAAAAGGAAGAGGGGGGGATGGAGGGAGGGTTGAAATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCGGAGCTACAAGGACCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.77

Weight (kDa)

6.52

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27610 AT4G27620 AT4G27620 AT4G27620
fragaria_vesca	FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310 FvH4_7g34310
malus_domestica	MD01G1239500.v1.1 MD07G1032800.v1.1
prunus_persica	Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1 Prupe.2G329400_v2.0.a1
pyrus_communis	pycom01g24660 pycom07g02320 pycom07g28400
rosa_chinensis	RchiOBHm_Chr1g0384701
rosa_laevigata	RLG00000015599 RLG00000026014
rosa_multiflora	Rmu_sc0003829.1_g000047 Rmu_sc0014575.1_g000003 Rmu_sc0020692.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276440 Rroxscaffold_7G00217980
rosa_rugosa	Rorug01G0450900 Rorug01G0451000 Rorug01G0451000 Rorug01G0451100.1 Rorug01G0451200
rosa_samantha	Rh1AG475400 Rh1BG433600 Rh1CG447100 Rh1DG466100 Rh6BG009700
rosa_wichuraiana	Rw1G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	768
AciI	CCGC	3 cut(s)	87, 511, 934
AclWI	GGATC	2 cut(s)	556, 585
AcoI	YGGCCR	2 cut(s)	316, 759
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	3 cut(s)	152, 487, 798
AdeI	CACNNNGTG	1 cut(s)	724
AfaI	GTAC	2 cut(s)	103, 926
AfiI	CCNNNNNNNGG	2 cut(s)	53, 768
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	4 cut(s)	456, 544, 872, 901
AluBI	AGCT	5 cut(s)	130, 646, 738, 939, 961
AluI	AGCT	5 cut(s)	130, 646, 738, 939, 961
Alw21I	GWGCWC	2 cut(s)	740, 963
Alw26I	GTCTC	1 cut(s)	985
AlwI	GGATC	2 cut(s)	556, 585
AlwNI	CAGNNNCTG	3 cut(s)	281, 325, 488
AoxI	GGCC	2 cut(s)	316, 759
ApeKI	GCWGC	4 cut(s)	643, 653, 931, 985
ApoI	RAATTY	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	62, 946
AsuC2I	CCSGG	1 cut(s)	758
AsuHPI	GGTGA	2 cut(s)	68, 367
AvaII	GGWCC	2 cut(s)	62, 946
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	740, 963
Bbv12I	GWGCWC	2 cut(s)	740, 963
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	4 cut(s)	655, 665, 918, 997
BccI	CCATC	7 cut(s)	53, 245, 286, 332, 806, 851, 908
BcnI	CCSGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	985
BfaI	CTAG	5 cut(s)	27, 168, 566, 752, 995
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	4 cut(s)	644, 654, 932, 986
BlsI	GCNGC	4 cut(s)	645, 655, 933, 987
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	1 cut(s)	758
Bme18I	GGWCC	2 cut(s)	62, 946
BmgT120I	GGNCC	2 cut(s)	62, 946
BmiI	GGNNCC	3 cut(s)	91, 343, 363
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	8 cut(s)	186, 312, 402, 413, 417, 561, 640, 820
Bpu10I	CCTNAGC	2 cut(s)	698, 878
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	758
Bsa29I	ATCGAT	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	756
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 768
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	3 cut(s)	201, 809, 862
BseLI	CCNNNNNNNGG	2 cut(s)	53, 768
BseMII	CTCAG	7 cut(s)	47, 273, 477, 626, 669, 849, 869
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	895
BseXI	GCAGC	4 cut(s)	655, 665, 918, 997
BshFI	GGCC	2 cut(s)	318, 761
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	740, 963
BsiSI	CCGG	2 cut(s)	84, 758
BslFI	GGGAC	2 cut(s)	677, 741
BslI	CCNNNNNNNGG	2 cut(s)	53, 768
BsmAI	GTCTC	1 cut(s)	985
BsmFI	GGGAC	2 cut(s)	677, 741
BsmI	GAATGC	2 cut(s)	169, 613
BsnI	GGCC	2 cut(s)	318, 761
Bsp1286I	GDGCHC	2 cut(s)	740, 963
Bsp143I	GATC	4 cut(s)	29, 561, 577, 715
BspACI	CCGC	3 cut(s)	87, 511, 934
BspANI	GGCC	2 cut(s)	318, 761
BspCNI	CTCAG	7 cut(s)	46, 274, 476, 625, 670, 848, 870
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	91, 343, 363
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	556, 585
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	756
BssMI	GATC	4 cut(s)	29, 561, 577, 715
Bst4CI	ACNGT	3 cut(s)	361, 722, 791
Bst6I	CTCTTC	3 cut(s)	539, 544, 841
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	4 cut(s)	85, 138, 201, 308
BstDEI	CTNAG	9 cut(s)	33, 282, 463, 530, 612, 678, 698, 835, 878
BstF5I	GGATG	3 cut(s)	201, 809, 862
BstKTI	GATC	4 cut(s)	32, 564, 580, 718
BstMAI	GTCTC	1 cut(s)	985
BstMBI	GATC	4 cut(s)	29, 561, 577, 715
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
BstNSI	RCATGY	2 cut(s)	217, 734
BstSCI	CCNGG	1 cut(s)	756
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	655, 665, 918, 997
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	318, 761
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	3 cut(s)	201, 809, 862
BtsIMutI	CAGTG	3 cut(s)	602, 718, 965
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	85, 138, 201, 308
CaiI	CAGNNNCTG	3 cut(s)	281, 325, 488
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	62, 946
ClaI	ATCGAT	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	102, 925
CviAII	CATG	6 cut(s)	214, 289, 474, 559, 731, 794
CviQI	GTAC	2 cut(s)	102, 925
DdeI	CTNAG	9 cut(s)	33, 282, 463, 530, 612, 678, 698, 835, 878
DpnI	GATC	4 cut(s)	31, 563, 579, 717
DpnII	GATC	4 cut(s)	29, 561, 577, 715
DraIII	CACNNNGTG	1 cut(s)	724
EaeI	YGGCCR	2 cut(s)	316, 759
Eam1104I	CTCTTC	3 cut(s)	539, 544, 841
EarI	CTCTTC	3 cut(s)	539, 544, 841
Ecl136II	GAGCTC	2 cut(s)	738, 961
Eco24I	GRGCYC	2 cut(s)	740, 963
Eco47I	GGWCC	2 cut(s)	62, 946
Eco53kI	GAGCTC	2 cut(s)	738, 961
Eco57I	CTGAAG	3 cut(s)	152, 487, 798
EcoICRI	GAGCTC	2 cut(s)	738, 961
EcoRI	GAATTC	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	740, 963
FaeI	CATG	6 cut(s)	217, 292, 477, 562, 734, 797
FaiI	YATR	9 cut(s)	149, 215, 290, 475, 560, 732, 767, 769, 795
FalI	AAGNNNNNCTT	2 cut(s)	911, 943
FaqI	GGGAC	2 cut(s)	677, 741
FatI	CATG	6 cut(s)	213, 288, 473, 558, 730, 793
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	644, 654, 932, 986
FokI	GGATG	3 cut(s)	208, 816, 869
FriOI	GRGCYC	2 cut(s)	740, 963
Fsp4HI	GCNGC	4 cut(s)	644, 654, 932, 986
FspBI	CTAG	5 cut(s)	27, 168, 566, 752, 995
GluI	GCNGC	4 cut(s)	644, 654, 932, 986
HaeIII	GGCC	2 cut(s)	318, 761
HapII	CCGG	2 cut(s)	84, 758
Hin1II	CATG	6 cut(s)	217, 292, 477, 562, 734, 797
HinfI	GANTC	5 cut(s)	332, 467, 485, 674, 998
HpaII	CCGG	2 cut(s)	84, 758
HphI	GGTGA	2 cut(s)	68, 367
Hpy188III	TCNNGA	3 cut(s)	276, 809, 827
HpyAV	CCTTC	4 cut(s)	186, 451, 697, 895
HpyCH4III	ACNGT	3 cut(s)	361, 722, 791
HpyCH4IV	ACGT	2 cut(s)	104, 115
HpyCH4V	TGCA	9 cut(s)	203, 217, 270, 574, 595, 637, 653, 713, 985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
HpyF3I	CTNAG	9 cut(s)	33, 282, 463, 530, 612, 678, 698, 835, 878
HpySE526I	ACGT	2 cut(s)	104, 115
Hsp92II	CATG	6 cut(s)	217, 292, 477, 562, 734, 797
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	29, 561, 577, 715
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	4 cut(s)	655, 665, 918, 997
LweI	GCATC	8 cut(s)	186, 312, 402, 413, 417, 561, 640, 820
MaeI	CTAG	5 cut(s)	27, 168, 566, 752, 995
MaeII	ACGT	2 cut(s)	104, 115
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	31, 563, 579, 717
MboI	GATC	4 cut(s)	29, 561, 577, 715
MboII	GAAGA	6 cut(s)	399, 402, 493, 556, 561, 858
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	740, 963
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 896
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	9 cut(s)	193, 381, 441, 842, 844, 854, 858, 873, 876
Mox20I	TGGCCA	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	98, 264, 378
MslI	CAYNNNNRTG	2 cut(s)	222, 798
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	2 cut(s)	84, 758
MspR9I	CCNGG	1 cut(s)	758
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	169, 613
MwoI	GCNNNNNNNGC	6 cut(s)	89, 267, 436, 617, 626, 643
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	758
NdeII	GATC	4 cut(s)	29, 561, 577, 715
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	6 cut(s)	217, 292, 477, 562, 734, 797
NlaIV	GGNNCC	3 cut(s)	91, 343, 363
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	2 cut(s)	217, 734
PciI	ACATGT	1 cut(s)	730
PctI	GAATGC	2 cut(s)	169, 613
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	332, 467, 674, 998
PflMI	CCANNNNNTGG	1 cut(s)	768
PkrI	GCNGC	4 cut(s)	645, 655, 933, 987
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	730
Psp124BI	GAGCTC	2 cut(s)	740, 963
PspN4I	GGNNCC	3 cut(s)	91, 343, 363
PspPI	GGNCC	2 cut(s)	62, 946
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	3 cut(s)	281, 325, 488
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	103, 926
RsaNI	GTAC	2 cut(s)	102, 925
RseI	CAYNNNNRTG	2 cut(s)	222, 798
SacI	GAGCTC	2 cut(s)	740, 963
SaqAI	TTAA	3 cut(s)	98, 264, 378
SatI	GCNGC	4 cut(s)	644, 654, 932, 986
Sau3AI	GATC	4 cut(s)	29, 561, 577, 715
Sau96I	GGNCC	2 cut(s)	62, 946
SbfI	CCTGCAGG	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	758
SdaI	CCTGCAGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	740, 963
SfaNI	GCATC	8 cut(s)	186, 312, 402, 413, 417, 561, 640, 820
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	62, 946
SmiMI	CAYNNNNRTG	2 cut(s)	222, 798
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse8387I	CCTGCAGG	1 cut(s)	205
Sse9I	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 896
SsiI	CCGC	3 cut(s)	87, 511, 934
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	5 cut(s)	27, 168, 566, 752, 995
SstI	GAGCTC	2 cut(s)	740, 963
StyD4I	CCNGG	1 cut(s)	756
TaaI	ACNGT	3 cut(s)	361, 722, 791
TaiI	ACGT	2 cut(s)	107, 118
TaqI	TCGA	2 cut(s)	41, 110
TasI	AATT	7 cut(s)	67, 265, 374, 457, 539, 598, 896
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	4 cut(s)	332, 467, 674, 998
Tru1I	TTAA	3 cut(s)	98, 264, 378
Tru9I	TTAA	3 cut(s)	98, 264, 378
TscAI	CASTG	3 cut(s)	609, 725, 972
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	643, 653, 931, 985
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	17, 314
TspRI	CASTG	3 cut(s)	609, 725, 972
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	2 cut(s)	62, 946
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	2 cut(s)	217, 734
XspI	CTAG	5 cut(s)	27, 168, 566, 752, 995
ZrmI	AGTACT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.