Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Reverse (-)

14125212 .. 14127082

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGTTTCTTCGCTGTTGCTTGCTCCGCGCCAAGATCTTCTATGCTTCTCACCGGCTTGAATTCGAGCTTCTCTGATATGCATCGCAGCCCACTATTTGTTTTCCCGGTGACTATATCATCCCGGAGCGTGAAACGCTTCGCCGCTGTTTCGTCTGATTCCGTACTAGACCCTGAATCCAAAAATCAAACTCGGTCCCGTCGCAAAAATAAGGAAGCAGTTACGCCAATTGCTGAAACCGAGAACAATGAAAAGTTTCCGACAAAGGTCCCGCGTAAATCGAAGCGTGGGCGGCGGAGTGAAGCAGACGCTGTGGAAGATTACGTGAGAAGCTCCCTCGAGCGTACTTTCTCCACCATAAAGGAGCAGAATCCGGAGGTTTTTGAGAACAAGGAGAAGGCGAATTTCATCAAAGACAGAGGCGTTGATGAAGAAGAGGAAGAAGAAGAAGAGATGGTGGTGGAAGAGGAAGATCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAAGCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGATGATGGGAGTGAGATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGGGAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTTGTATTCGAGCGATACAAAAGAGCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGATGCGAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTGGCATATGCTCTTAAAGCTAAGGAATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATTCTGTACAGGGAGAAAGACTTTCGCACGGCGGATGAATTGGTTCATATGATTGCGCATTTCTACTATAAAGCGAAGAGGCCTTCGTGTGTCGACAAGGCTAATGTAACCCCGTACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

38.24

Weight (kDa)

5.23

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	930
AccI	GTMKAC	1 cut(s)	966
AccII	CGCG	3 cut(s)	29, 274, 864
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	8 cut(s)	27, 144, 272, 292, 295, 782, 864, 905
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	61, 403
AfaI	GTAC	4 cut(s)	165, 346, 881, 989
AgsI	TTSAA	2 cut(s)	61, 721
AluBI	AGCT	8 cut(s)	69, 333, 518, 642, 698, 727, 737, 833
AluI	AGCT	8 cut(s)	69, 333, 518, 642, 698, 727, 737, 833
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	2 cut(s)	482, 953
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	61, 403
Asp700I	GAANNNNTTC	3 cut(s)	137, 255, 915
AspLEI	GCGC	2 cut(s)	31, 931
AspS9I	GGNCC	2 cut(s)	195, 268
AsuC2I	CCSGG	2 cut(s)	107, 124
AsuHPI	GGTGA	3 cut(s)	43, 121, 602
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	195, 268
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BalI	TGGCCA	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	3 cut(s)	448, 498, 560
BceAI	ACGGC	1 cut(s)	918
BcnI	CCSGG	2 cut(s)	107, 124
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	3 cut(s)	167, 657, 699
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	3 cut(s)	88, 144, 293
BlsI	GCNGC	3 cut(s)	89, 145, 294
Bme1390I	CCNGG	2 cut(s)	107, 124
Bme18I	GGWCC	2 cut(s)	195, 268
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	195, 268
BmiI	GGNNCC	2 cut(s)	197, 270
BmrFI	CCNGG	2 cut(s)	107, 124
BmsI	GCATC	2 cut(s)	91, 745
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	2 cut(s)	107, 124
Bsa29I	ATCGAT	1 cut(s)	766
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	81, 537
BsaJI	CCNNGG	1 cut(s)	776
BsaWI	WCCGGW	2 cut(s)	373, 870
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	485, 713
Bse8I	GATNNNNATC	2 cut(s)	81, 537
BseAI	TCCGGA	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	6 cut(s)	119, 509, 538, 652, 760, 913
BseJI	GATNNNNATC	2 cut(s)	81, 537
BseNI	ACTGG	2 cut(s)	485, 713
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	29, 274, 864
BshFI	GGCC	2 cut(s)	484, 955
BshVI	ATCGAT	1 cut(s)	766
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	5 cut(s)	54, 107, 124, 374, 871
BslFI	GGGAC	2 cut(s)	181, 254
BsmAI	GTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	181, 254
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	484, 955
BsoBI	CYCGRG	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	35, 472, 618, 763
BspACI	CCGC	8 cut(s)	27, 144, 272, 292, 295, 782, 864, 905
BspANI	GGCC	2 cut(s)	484, 955
BspDI	ATCGAT	1 cut(s)	766
BspEI	TCCGGA	1 cut(s)	373
BspFNI	CGCG	3 cut(s)	29, 274, 864
BspLI	GGNNCC	2 cut(s)	197, 270
BspPI	GGATC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	2 cut(s)	485, 713
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	4 cut(s)	35, 472, 618, 763
Bst4CI	ACNGT	1 cut(s)	992
Bst6I	CTCTTC	5 cut(s)	429, 444, 459, 860, 944
BstAUI	TGTACA	1 cut(s)	879
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	834
BstDSI	CCRYGG	1 cut(s)	776
BstF5I	GGATG	6 cut(s)	119, 509, 538, 652, 760, 913
BstFNI	CGCG	3 cut(s)	29, 274, 864
BstHHI	GCGC	2 cut(s)	31, 931
BstKTI	GATC	4 cut(s)	38, 475, 621, 766
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	4 cut(s)	35, 472, 618, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 135, 292, 830
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	105, 122
BstUI	CGCG	3 cut(s)	29, 274, 864
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	35, 472
BstYI	RGATCY	2 cut(s)	35, 472
Bsu15I	ATCGAT	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	484, 955
BsuTUI	ATCGAT	1 cut(s)	766
BtgI	CCRYGG	1 cut(s)	776
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	6 cut(s)	119, 509, 538, 652, 760, 913
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	311
CfoI	GCGC	2 cut(s)	31, 931
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	195, 268
ClaI	ATCGAT	1 cut(s)	766
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	4 cut(s)	164, 345, 880, 988
CviQI	GTAC	4 cut(s)	164, 345, 880, 988
DdeI	CTNAG	1 cut(s)	834
DpnI	GATC	4 cut(s)	37, 474, 620, 765
DpnII	GATC	4 cut(s)	35, 472, 618, 763
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	5 cut(s)	429, 444, 459, 860, 944
EarI	CTCTTC	5 cut(s)	429, 444, 459, 860, 944
EciI	GGCGGA	2 cut(s)	310, 920
Eco147I	AGGCCT	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	195, 268
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	84
FaiI	YATR	9 cut(s)	44, 80, 116, 359, 820, 822, 921, 923, 942
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	2 cut(s)	181, 254
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	2 cut(s)	820, 921
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	3 cut(s)	88, 144, 293
FokI	GGATG	6 cut(s)	106, 516, 525, 639, 767, 920
Fsp4HI	GCNGC	3 cut(s)	88, 144, 293
FspBI	CTAG	3 cut(s)	167, 657, 699
FspI	TGCGCA	1 cut(s)	930
GlaI	GCGC	2 cut(s)	30, 930
GluI	GCNGC	3 cut(s)	88, 144, 293
HaeIII	GGCC	2 cut(s)	484, 955
HapII	CCGG	5 cut(s)	54, 107, 124, 374, 871
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	31, 931
Hin6I	GCGC	2 cut(s)	29, 929
HinP1I	GCGC	2 cut(s)	29, 929
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	2 cut(s)	516, 640
HinfI	GANTC	6 cut(s)	158, 176, 370, 510, 850, 874
HpaII	CCGG	5 cut(s)	54, 107, 124, 374, 871
HphI	GGTGA	3 cut(s)	43, 121, 602
Hpy166II	GTNNAC	2 cut(s)	662, 967
Hpy188I	TCNGA	4 cut(s)	76, 157, 261, 523
Hpy188III	TCNNGA	3 cut(s)	374, 476, 805
Hpy8I	GTNNAC	2 cut(s)	662, 967
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	391, 581, 715, 966
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4IV	ACGT	3 cut(s)	324, 498, 552
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 135, 292, 830
HpyF3I	CTNAG	1 cut(s)	834
HpySE526I	ACGT	3 cut(s)	324, 498, 552
HspAI	GCGC	2 cut(s)	29, 929
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	35, 472, 618, 763
LmnI	GCTCC	5 cut(s)	29, 126, 338, 364, 724
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	91, 745
MaeI	CTAG	3 cut(s)	167, 657, 699
MaeII	ACGT	3 cut(s)	324, 498, 552
MaeIII	GTNAC	3 cut(s)	109, 220, 979
MalI	GATC	4 cut(s)	37, 474, 620, 765
MboI	GATC	4 cut(s)	35, 472, 618, 763
MfeI	CAATTG	2 cut(s)	228, 622
MflI	RGATCY	2 cut(s)	35, 472
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	5 cut(s)	61, 228, 403, 622, 911
MluNI	TGGCCA	1 cut(s)	484
MmeI	TCCRAC	3 cut(s)	284, 481, 538
MnlI	CCTC	7 cut(s)	347, 370, 413, 430, 460, 783, 945
Mox20I	TGGCCA	1 cut(s)	484
Mph1103I	ATGCAT	1 cut(s)	84
MroI	TCCGGA	1 cut(s)	373
MroXI	GAANNNNTTC	3 cut(s)	137, 255, 915
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	2 cut(s)	786, 828
Msp20I	TGGCCA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	5 cut(s)	54, 107, 124, 374, 871
MspR9I	CCNGG	2 cut(s)	107, 124
MunI	CAATTG	2 cut(s)	228, 622
Mva1269I	GAATGC	1 cut(s)	845
MvnI	CGCG	3 cut(s)	29, 274, 864
MwoI	GCNNNNNNNGC	4 cut(s)	26, 135, 292, 830
NciI	CCSGG	2 cut(s)	107, 124
NdeI	CATATG	2 cut(s)	820, 921
NdeII	GATC	4 cut(s)	35, 472, 618, 763
NlaIV	GGNNCC	2 cut(s)	197, 270
NmuCI	GTSAC	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	930
NsiI	ATGCAT	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	955
PctI	GAATGC	1 cut(s)	845
PdmI	GAANNNNTTC	3 cut(s)	137, 255, 915
PfeI	GAWTC	6 cut(s)	158, 176, 370, 510, 850, 874
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	89, 145, 294
Ppu21I	YACGTR	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	197, 270
PspPI	GGNCC	2 cut(s)	195, 268
PspPPI	RGGWCCY	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	35, 472
RsaI	GTAC	4 cut(s)	165, 346, 881, 989
RsaNI	GTAC	4 cut(s)	164, 345, 880, 988
SalI	GTCGAC	1 cut(s)	965
SaqAI	TTAA	2 cut(s)	786, 828
SatI	GCNGC	3 cut(s)	88, 144, 293
Sau3AI	GATC	4 cut(s)	35, 472, 618, 763
Sau96I	GGNCC	2 cut(s)	195, 268
ScrFI	CCNGG	2 cut(s)	107, 124
SfaNI	GCATC	2 cut(s)	91, 745
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	195, 268
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	338, 728
SmoI	CTYRAG	2 cut(s)	338, 728
Sse9I	AATT	5 cut(s)	61, 228, 403, 622, 911
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	8 cut(s)	27, 144, 272, 292, 295, 782, 864, 905
SspMI	CTAG	3 cut(s)	167, 657, 699
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	2 cut(s)	105, 122
TaaI	ACNGT	1 cut(s)	992
TaiI	ACGT	3 cut(s)	327, 501, 555
TaqI	TCGA	8 cut(s)	65, 281, 339, 531, 681, 766, 804, 966
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	61, 228, 403, 622, 911
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	2 cut(s)	146, 295
TfiI	GAWTC	6 cut(s)	158, 176, 370, 510, 850, 874
Tru1I	TTAA	2 cut(s)	786, 828
Tru9I	TTAA	2 cut(s)	786, 828
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	6 cut(s)	264, 397, 444, 641, 908, 924
TspGWI	ACGGA	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	195, 268
XapI	RAATTY	2 cut(s)	61, 403
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	3 cut(s)	137, 255, 915
XspI	CTAG	3 cut(s)	167, 657, 699
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.