Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

19965029 .. 19967904

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTGAGCTTTCAAACTTGCCTCCCGCCCATACTGCCTCCCGCCTCTGTGCACCGTACCCGCGCTCTAAACTCTCTTTCTTGCTTGGCAATCTCGAAAAAATCCGATTCGGAGCCCCATCCTAAACCGAGCTCCAACGCAAAACCGAAACCTCGCCGCCGAAAAATTGAAACTTCTGAAGACGAAGATGAAGAGCAAGGCGAGACGTTCCCGACGACGATTCCGAGGAAGCCTCGGCGTGGGCGTAGAAGCGAGGCGGCGGCGGTGGAAGATTACGTGCGGGAGTCACTTGATCGAACATTTGCATCGATCAGAGAGCAGAACCCAGAAATTGTTGAGAAGAAAGAAGAAGTGATGAAGAGGAAAGTTGACGACGATGAAGAAGATGAGGGTTTTGGAAGAGAGAAGAGCATGGTGGTTGAAGAGGAGAGTAGGGATTGGCCTTTGGATGCTGACGTGGGGTGGGGGATTAGGGCTTCGGAGTACTTTGAGAATCACCCGATAAGGAACGTGGTGGGTGACAATGGGGTTGAGCTTGATTGGGAAGGTGAGGTTGAAGATAATTGGGTGAAGGAGATTAATTGCTTGGAATGGGAAAGCTTTGCATTTCATCCAAGTCCGCTTCTGGTTCTTGTTTTTGAGAGGTACAACAGAGCAAGCGATAACTGGAAGGCTTTGAAAGAGCTCGAAAAGGCGGTCAAGGTCTATTGGGATGCCAAAGATCGCTTGCCTCCTCGGTCGATTAAGATAGACATTAATATTGAGAGAGATTTGGCTTATGCTCTCAAAGTTAAAGAATGTCCTCAGATTTTGTTTCTACGAGGAAACAGGATCTTGTACAGAGAGAAAGAGATTCGAACAGCAGAAGAATTGGTTCCAATGATAGCGCATTTCTACTACAATGCAAAGAGGCCTTCCTGGATTGATGTCAAGGAGCTATCTCCACCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

37.0

Weight (kDa)

5.32

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AclWI	GGATC	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	58, 485, 647, 839
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	5 cut(s)	14, 170, 422, 557, 679
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	917
AluBI	AGCT	6 cut(s)	9, 132, 535, 600, 685, 937
AluI	AGCT	6 cut(s)	9, 132, 535, 600, 685, 937
Alw21I	GWGCWC	3 cut(s)	54, 134, 687
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	839
AoxI	GGCC	2 cut(s)	440, 911
ApaLI	GTGCAC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	681, 713
AseI	ATTAAT	2 cut(s)	579, 756
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	2 cut(s)	65, 889
AsuHPI	GGTGA	4 cut(s)	488, 530, 560, 580
AsuII	TTCGAA	1 cut(s)	856
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	117, 134, 687
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	3 cut(s)	54, 134, 687
BccI	CCATC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	919
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	952
BisI	GCNGC	3 cut(s)	157, 258, 261
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	3 cut(s)	158, 259, 262
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	919
BmgBI	CACGTC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	114, 876
BmrFI	CCNGG	1 cut(s)	919
BmsI	GCATC	3 cut(s)	314, 439, 703
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	856
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	224, 233, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	919
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	224, 233, 734
BseGI	GGATG	4 cut(s)	118, 454, 610, 718
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	2 cut(s)	440, 723
BseSI	GKGCMC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	2 cut(s)	442, 913
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	3 cut(s)	54, 134, 687
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	442, 913
Bsp119I	TTCGAA	1 cut(s)	856
Bsp1286I	GDGCHC	4 cut(s)	54, 117, 134, 687
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	292, 309, 721, 831
Bsp1720I	GCTNAGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	442, 913
BspCNI	CTCAG	1 cut(s)	817
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	114, 876
BspPI	GGATC	1 cut(s)	839
BspQI	GCTCTTC	2 cut(s)	186, 401
BspT104I	TTCGAA	1 cut(s)	856
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	3 cut(s)	224, 233, 734
BssMI	GATC	4 cut(s)	292, 309, 721, 831
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	5 cut(s)	186, 353, 394, 401, 417
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	856
BstC8I	GCNNGC	2 cut(s)	658, 728
BstDEI	CTNAG	2 cut(s)	5, 804
BstF5I	GGATG	4 cut(s)	118, 454, 610, 718
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	65, 889
BstKTI	GATC	4 cut(s)	295, 312, 724, 834
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	292, 309, 721, 831
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	917
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	442, 913
BsuTUI	ATCGAT	1 cut(s)	308
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	4 cut(s)	118, 454, 610, 718
Cac8I	GCNNGC	2 cut(s)	658, 728
CfoI	GCGC	2 cut(s)	65, 889
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	4 cut(s)	57, 484, 646, 838
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	4 cut(s)	57, 484, 646, 838
DdeI	CTNAG	2 cut(s)	5, 804
DpnI	GATC	4 cut(s)	294, 311, 723, 833
DpnII	GATC	4 cut(s)	292, 309, 721, 831
Eam1104I	CTCTTC	5 cut(s)	186, 353, 394, 401, 417
EarI	CTCTTC	5 cut(s)	186, 353, 394, 401, 417
Ecl136II	GAGCTC	2 cut(s)	132, 685
Eco147I	AGGCCT	1 cut(s)	913
Eco24I	GRGCYC	3 cut(s)	117, 134, 687
Eco53kI	GAGCTC	2 cut(s)	132, 685
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	2 cut(s)	132, 685
EcoRII	CCWGG	1 cut(s)	917
EcoT38I	GRGCYC	3 cut(s)	117, 134, 687
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	415
FaiI	YATR	3 cut(s)	32, 413, 780
FatI	CATG	1 cut(s)	411
FauI	CCCGC	4 cut(s)	33, 49, 68, 273
Fnu4HI	GCNGC	3 cut(s)	157, 258, 261
FokI	GGATG	4 cut(s)	105, 461, 597, 725
FriOI	GRGCYC	3 cut(s)	117, 134, 687
Fsp4HI	GCNGC	3 cut(s)	157, 258, 261
FspBI	CTAG	1 cut(s)	952
GlaI	GCGC	2 cut(s)	64, 888
GluI	GCNGC	3 cut(s)	157, 258, 261
HaeIII	GGCC	2 cut(s)	442, 913
HhaI	GCGC	2 cut(s)	65, 889
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	2 cut(s)	63, 887
HinP1I	GCGC	2 cut(s)	63, 887
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	5 cut(s)	107, 220, 284, 493, 853
HphI	GGTGA	4 cut(s)	488, 530, 560, 580
Hpy166II	GTNNAC	2 cut(s)	52, 370
Hpy188I	TCNGA	7 cut(s)	106, 112, 178, 225, 314, 481, 807
Hpy188III	TCNNGA	2 cut(s)	94, 211
Hpy8I	GTNNAC	2 cut(s)	52, 370
Hpy99I	CGWCG	3 cut(s)	217, 220, 377
HpyAV	CCTTC	4 cut(s)	539, 565, 664, 924
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	4 cut(s)	206, 276, 456, 510
HpyCH4V	TGCA	4 cut(s)	52, 305, 605, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	5, 804
HpySE526I	ACGT	4 cut(s)	206, 276, 456, 510
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	2 cut(s)	63, 887
Kzo9I	GATC	4 cut(s)	292, 309, 721, 831
LguI	GCTCTTC	2 cut(s)	186, 401
LmnI	GCTCC	3 cut(s)	112, 137, 934
LpnPI	CCDG	6 cut(s)	339, 611, 652, 814, 904, 931
LweI	GCATC	3 cut(s)	314, 439, 703
MaeI	CTAG	1 cut(s)	952
MaeII	ACGT	4 cut(s)	206, 276, 456, 510
MaeIII	GTNAC	2 cut(s)	285, 518
MalI	GATC	4 cut(s)	294, 311, 723, 833
MboI	GATC	4 cut(s)	292, 309, 721, 831
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	4 cut(s)	54, 117, 134, 687
MluCI	AATT	5 cut(s)	165, 330, 562, 580, 869
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	4 cut(s)	579, 744, 756, 792
MspR9I	CCNGG	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	919
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	4 cut(s)	292, 309, 721, 831
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	2 cut(s)	114, 876
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	285, 518
NspV	TTCGAA	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	913
PciSI	GCTCTTC	2 cut(s)	186, 401
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 221, 241
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	107, 220, 493, 853
PfoI	TCCNGGA	1 cut(s)	917
PkrI	GCNGC	3 cut(s)	158, 259, 262
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	277
PshBI	ATTAAT	2 cut(s)	579, 756
Psp124BI	GAGCTC	2 cut(s)	134, 687
Psp6I	CCWGG	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	917
PspN4I	GGNNCC	2 cut(s)	114, 876
PsuI	RGATCY	1 cut(s)	831
RsaI	GTAC	4 cut(s)	58, 485, 647, 839
RsaNI	GTAC	4 cut(s)	57, 484, 646, 838
SacI	GAGCTC	2 cut(s)	134, 687
SapI	GCTCTTC	2 cut(s)	186, 401
SaqAI	TTAA	4 cut(s)	579, 744, 756, 792
SatI	GCNGC	3 cut(s)	157, 258, 261
Sau3AI	GATC	4 cut(s)	292, 309, 721, 831
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	919
SduI	GDGCHC	4 cut(s)	54, 117, 134, 687
SfaNI	GCATC	3 cut(s)	314, 439, 703
SfuI	TTCGAA	1 cut(s)	856
Sse9I	AATT	5 cut(s)	165, 330, 562, 580, 869
SseBI	AGGCCT	1 cut(s)	913
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	1 cut(s)	952
SstI	GAGCTC	2 cut(s)	134, 687
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	1 cut(s)	917
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	4 cut(s)	209, 279, 459, 513
TaqI	TCGA	6 cut(s)	95, 295, 308, 687, 740, 856
TaqII	GACCGA	1 cut(s)	726
TasI	AATT	5 cut(s)	165, 330, 562, 580, 869
TatI	WGTACW	2 cut(s)	483, 837
TauI	GCSGC	3 cut(s)	159, 260, 263
TfiI	GAWTC	4 cut(s)	107, 220, 493, 853
Tru1I	TTAA	4 cut(s)	579, 744, 756, 792
Tru9I	TTAA	4 cut(s)	579, 744, 756, 792
TseFI	GTSAC	2 cut(s)	285, 518
Tsp45I	GTSAC	2 cut(s)	285, 518
TspDTI	ATGAA	4 cut(s)	204, 371, 393, 599
VneI	GTGCAC	1 cut(s)	50
VspI	ATTAAT	2 cut(s)	579, 756
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	1 cut(s)	952
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.