Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041802.1

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

5518 .. 6664

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgctgcgccttcaaatttgtcacccacccatgttgcacggcccttctctactctgtacccgcgctccgatatccctttcttgccgcgccgtgtcgagaaagtccgactcggagcccgacccggaccgagccaagccaaaaccccgtcgccggaaaaccgcggccggcggaaatgaaggcggagaaaaagaccagcctttcacgattccgaggaagacccggcgcgggcggaggagcgaggcggcggcggtgcaggattacgtgagggacacactcaaccggacgtttaagacaatccaggagcagaacccggagattttcgagaagaagggagaattgatgaaggagaaagctgccgccgttgacggcggctacgaggaggaggaggaggaggaggggagtgagagagaggagacggcggtggtggaggaggagacggagaattggccgctggatgcggaggtggggtgggggattagggcgtcggagtattttgagaagcacgcgattcggaacgtggtggatgaaaatggggttgagattgattgggaaggagaggttgaggataattgggtcaaggagattaattgcttggagtgggaaagctttgcttttcatcccagtccgcttattgtctttgttttcgagaggtataacagagcagctgagaattggaaggctttgaaggagcttgagaaggctgtcaaggtgtattgggatgccaaagatcggctgcctcccaggtctgtgaagatagacatgaatattgagagggatttggcctatgctttgaaggttagagactgtcctcaggttttgtttctgagagggaacaggatcttgtacagggagaaagagattcggacggcggacgaattggttgccatgattgcgcatttctactacaatgcaaagaggccgtcctggattgatgtgaaggagctaactctgccatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

37.07

Weight (kDa)

5.4

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	894
AccII	CGCG	5 cut(s)	63, 87, 161, 225, 506
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	2 cut(s)	162, 446
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	2 cut(s)	58, 845
AfiI	CCNNNNNNNGG	3 cut(s)	150, 225, 729
AgsI	TTSAA	3 cut(s)	14, 685, 793
AjnI	CCWGG	3 cut(s)	297, 740, 923
AluBI	AGCT	5 cut(s)	353, 606, 665, 691, 943
AluI	AGCT	5 cut(s)	353, 606, 665, 691, 943
Alw26I	GTCTC	3 cut(s)	407, 428, 795
AlwI	GGATC	1 cut(s)	845
AoxI	GGCC	5 cut(s)	40, 162, 446, 780, 917
ApeKI	GCWGC	4 cut(s)	4, 353, 662, 733
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	905, 937
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	5 cut(s)	9, 65, 89, 225, 895
AspS9I	GGNCC	2 cut(s)	41, 124
AsuC2I	CCSGG	3 cut(s)	122, 220, 311
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	340, 674, 720
BceAI	ACGGC	7 cut(s)	55, 74, 344, 382, 432, 882, 904
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 863, 897
BciT130I	CCWGG	3 cut(s)	299, 742, 925
BcnI	CCSGG	3 cut(s)	122, 220, 311
BcoDI	GTCTC	3 cut(s)	407, 428, 795
BfaI	CTAG	1 cut(s)	958
Bme1390I	CCNGG	6 cut(s)	122, 220, 299, 311, 742, 925
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	41, 124
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 742, 925
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	445, 709
BmuI	ACTGGG	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	713
BpuMI	CCSGG	3 cut(s)	122, 220, 311
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	159, 209, 740
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 452, 482
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 225, 729
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	621
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	3 cut(s)	299, 742, 925
BseDI	CCNNGG	3 cut(s)	159, 209, 740
BseGI	GGATG	4 cut(s)	460, 529, 616, 724
BseLI	CCNNNNNNNGG	3 cut(s)	150, 225, 729
BseMII	CTCAG	3 cut(s)	657, 815, 824
BseNI	ACTGG	1 cut(s)	621
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	340, 674, 720
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	5 cut(s)	63, 87, 161, 225, 506
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	42, 164, 448, 782, 919
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	150, 225, 729
BsmAI	GTCTC	3 cut(s)	407, 428, 795
BsmBI	CGTCTC	2 cut(s)	407, 428
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	42, 164, 448, 782, 919
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	2 cut(s)	727, 837
BspANI	GGCC	5 cut(s)	42, 164, 448, 782, 919
BspCNI	CTCAG	3 cut(s)	658, 816, 823
BspFNI	CGCG	5 cut(s)	63, 87, 161, 225, 506
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	845
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	159, 209, 740
BssMI	GATC	2 cut(s)	727, 837
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	3 cut(s)	299, 742, 925
Bst4CI	ACNGT	1 cut(s)	806
BstACI	GRCGYC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	843
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	166, 227, 504
BstDEI	CTNAG	3 cut(s)	666, 810, 824
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	460, 529, 616, 724
BstFNI	CGCG	5 cut(s)	63, 87, 161, 225, 506
BstHHI	GCGC	5 cut(s)	9, 65, 89, 225, 895
BstKTI	GATC	2 cut(s)	730, 840
BstMAI	GTCTC	3 cut(s)	407, 428, 795
BstMBI	GATC	2 cut(s)	727, 837
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	890, 949
BstNI	CCWGG	3 cut(s)	299, 742, 925
BstSCI	CCNGG	6 cut(s)	120, 218, 297, 309, 740, 923
BstUI	CGCG	5 cut(s)	63, 87, 161, 225, 506
BstV1I	GCAGC	3 cut(s)	340, 674, 720
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	837
BstZI	CGGCCG	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	5 cut(s)	42, 164, 448, 782, 919
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	460, 529, 616, 724
Cac8I	GCNNGC	3 cut(s)	166, 227, 504
CfoI	GCGC	5 cut(s)	9, 65, 89, 225, 895
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	41, 124
Cfr42I	CCGCGG	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	57, 844
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	3 cut(s)	31, 760, 886
CviQI	GTAC	2 cut(s)	57, 844
DdeI	CTNAG	3 cut(s)	666, 810, 824
DpnI	GATC	2 cut(s)	729, 839
DpnII	GATC	2 cut(s)	727, 837
EaeI	YGGCCR	2 cut(s)	162, 446
EagI	CGGCCG	1 cut(s)	162
EciI	GGCGGA	4 cut(s)	183, 195, 244, 884
EclXI	CGGCCG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	810
EcoRII	CCWGG	3 cut(s)	297, 740, 923
EcoRV	GATATC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	2 cut(s)	407, 428
FaeI	CATG	3 cut(s)	34, 763, 889
FaiI	YATR	6 cut(s)	32, 654, 761, 786, 887, 955
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	30, 759, 885
FauI	CCCGC	2 cut(s)	68, 218
FokI	GGATG	4 cut(s)	467, 536, 603, 731
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	958
FspI	TGCGCA	1 cut(s)	894
GlaI	GCGC	5 cut(s)	8, 64, 88, 224, 894
HaeIII	GGCC	5 cut(s)	42, 164, 448, 782, 919
HapII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	5 cut(s)	9, 65, 89, 225, 895
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	34, 763, 889
Hin6I	GCGC	5 cut(s)	7, 63, 87, 223, 893
HinP1I	GCGC	5 cut(s)	7, 63, 87, 223, 893
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	4 cut(s)	107, 205, 508, 859
HpaII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	8 cut(s)	69, 106, 112, 210, 487, 513, 825, 864
Hpy188III	TCNNGA	4 cut(s)	96, 202, 322, 646
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	2 cut(s)	150, 487
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	3 cut(s)	261, 284, 516
HpyCH4V	TGCA	3 cut(s)	37, 253, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	890, 949
HpyF3I	CTNAG	3 cut(s)	666, 810, 824
HpySE526I	ACGT	3 cut(s)	261, 284, 516
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	34, 763, 889
HspAI	GCGC	5 cut(s)	7, 63, 87, 223, 893
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	727, 837
LmnI	GCTCC	6 cut(s)	70, 112, 234, 301, 688, 940
Lsp1109I	GCAGC	3 cut(s)	340, 674, 720
LweI	GCATC	2 cut(s)	445, 709
MaeI	CTAG	1 cut(s)	958
MaeII	ACGT	3 cut(s)	261, 284, 516
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	729, 839
MboI	GATC	2 cut(s)	727, 837
MboII	GAAGA	3 cut(s)	226, 337, 763
MflI	RGATCY	1 cut(s)	837
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	7 cut(s)	15, 335, 442, 568, 586, 670, 875
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	129, 465
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	288, 585
MspA1I	CMGCKG	3 cut(s)	161, 451, 665
MspI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
MspR9I	CCNGG	6 cut(s)	122, 220, 299, 311, 742, 925
MvaI	CCWGG	3 cut(s)	299, 742, 925
MvnI	CGCG	5 cut(s)	63, 87, 161, 225, 506
MwoI	GCNNNNNNNGC	2 cut(s)	890, 949
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	3 cut(s)	122, 220, 311
NdeII	GATC	2 cut(s)	727, 837
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	34, 763, 889
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	205, 508, 859
PfoI	TCCNGGA	2 cut(s)	297, 923
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	3 cut(s)	297, 740, 923
PspGI	CCWGG	3 cut(s)	297, 740, 923
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	41, 124
PsuI	RGATCY	1 cut(s)	837
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	58, 845
RsaNI	GTAC	2 cut(s)	57, 844
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	288, 585
Sau3AI	GATC	2 cut(s)	727, 837
Sau96I	GGNCC	2 cut(s)	41, 124
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 742, 925
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	445, 709
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	7 cut(s)	15, 335, 442, 568, 586, 670, 875
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	958
StyD4I	CCNGG	6 cut(s)	120, 218, 297, 309, 740, 923
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	3 cut(s)	264, 287, 519
TaqI	TCGA	3 cut(s)	95, 321, 645
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	15, 335, 442, 568, 586, 670, 875
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	7 cut(s)	87, 164, 245, 248, 359, 372, 451
TfiI	GAWTC	3 cut(s)	205, 508, 859
Tru1I	TTAA	2 cut(s)	288, 585
Tru9I	TTAA	2 cut(s)	288, 585
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	4, 353, 662, 733
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	189, 356, 540, 605, 776
TspGWI	ACGGA	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	15
XspI	CTAG	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.