Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

27303049 .. 27306682

Gene Structure 3634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1179400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTGCGCCTTCAAACTTGTCTCCCGCCGATACTACATATTTCCCCTCTGCACCGCACCCGCACTCTAAACTCTCTTCCTTGCTACGCTACTTCGAGAAAACCCGATTCGGAGCCCGACCTCAAAGCTCGCTCCAATCCGAAACCGAAATCTCGGCGCCCAAAGACCGAAACTTCTGAAGACGAGGGTGACGAGCCAGGCGAGACGTTTCCAGCGACGATTCCGAGAAAACCCCGGCGTGGGCGCAGAAGCGAAGCTGCGGCGGTTGAAGATTACGTGCGGGAGTCACTCGATCGGACGTTTGCGTCGATCAGAGAGCAGAACCCCGAAATTGTTGAGAAGAAAGATGGAGTAATGAAGAGGAAAGTGGACGATGGTGGGGAGGATGATGAGGATGAGGGTTTTGGAAGTGAGAAGAGCATAGTGGTTGAGGAGGAGAGCAAGGATTGGCCGTTGGATGCCGATGTGGGGTGGGGGATTCGGGCTTCAGAGTACTTCGAGAACCACCCGATTCGAAACGTAGTGGGCGAAAATGGGGTTGAGATTGATTGGGAAGGCGAGGTTGATGACAATTGGGTGAAGGAGATCAATTGCTTGGAGTGGGAGAGGTTTGCTTTTCACCCAAGTCCTCTTCTTGTTCTTGTTTTTGAGAGGTACAACAGAGCAAGCGAGAATTGGAAGGCGTTGAAAGAGCTCGAAAAGGCGGTCAAGGTCTATTGGAATGCCAAAGATCGATTGCCTCCTAGGTCGGTTAAGATTGACATCAACATTGAGAGAGATTTGGCTTATGCTCTTAAAGTTAGAGACTGTCCTCAGATTTTGTTTGTACGAGGAAACAGGATCTTGTACAGAGAAAAAGGTTGGAAACGGATTCATGGATATTCGGACTGCAGAAGAATTGGTTCCGATGATCGCGCATTTCTACTACAATGCAAAGAGGCCATCCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

36.75

Weight (kDa)

5.67

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	156
AccII	CGCG	1 cut(s)	915
AciI	CCGC	7 cut(s)	26, 55, 61, 260, 263, 280, 704
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	198, 471
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	4 cut(s)	494, 656, 828, 848
AfiI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
AgsI	TTSAA	3 cut(s)	14, 269, 688
AjnI	CCWGG	2 cut(s)	196, 945
AluBI	AGCT	3 cut(s)	128, 257, 694
AluI	AGCT	3 cut(s)	128, 257, 694
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	3 cut(s)	26, 197, 798
AlwI	GGATC	1 cut(s)	848
AoxI	GGCC	2 cut(s)	449, 939
ApeKI	GCWGC	2 cut(s)	4, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	690, 722
Asp700I	GAANNNNTTC	1 cut(s)	901
AspA2I	CCTAGG	1 cut(s)	743
AspLEI	GCGC	4 cut(s)	9, 159, 246, 917
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	200, 589, 611
AsuII	TTCGAA	1 cut(s)	514
AvrII	CCTAGG	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	117, 696
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	341, 368, 950
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	2 cut(s)	198, 947
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	26, 197, 798
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	889
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	3 cut(s)	5, 258, 261
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	6, 259, 262
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	198, 235, 947
BmiI	GGNNCC	3 cut(s)	114, 158, 904
BmrFI	CCNGG	3 cut(s)	198, 235, 947
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	233, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 240, 468
Bse8I	GATNNNNATC	1 cut(s)	761
BseBI	CCWGG	2 cut(s)	198, 947
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	2 cut(s)	233, 743
BseGI	GGATG	4 cut(s)	391, 400, 463, 942
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
BseMII	CTCAG	1 cut(s)	827
BseRI	GAGGAG	2 cut(s)	446, 449
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	915
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	451, 941
BshNI	GGYRCC	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	733
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
BsmAI	GTCTC	3 cut(s)	26, 197, 798
BsmBI	CGTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	451, 941
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	117, 696
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
BspACI	CCGC	7 cut(s)	26, 55, 61, 260, 263, 280, 704
BspANI	GGCC	2 cut(s)	451, 941
BspCNI	CTCAG	1 cut(s)	826
BspDI	ATCGAT	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	3 cut(s)	114, 158, 904
BspMAI	CTGCAG	1 cut(s)	893
BspPI	GGATC	1 cut(s)	848
BspQI	GCTCTTC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	846
BssECI	CCNNGG	2 cut(s)	233, 743
BssMI	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
BssNI	GRCGYC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	743
Bst2UI	CCWGG	2 cut(s)	198, 947
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	4 cut(s)	81, 353, 410, 636
BstACI	GRCGYC	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	846
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	130, 667
BstDEI	CTNAG	1 cut(s)	813
BstF5I	GGATG	4 cut(s)	391, 400, 463, 942
BstFNI	CGCG	1 cut(s)	915
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	4 cut(s)	9, 159, 246, 917
BstKTI	GATC	6 cut(s)	295, 312, 588, 733, 843, 913
BstMAI	GTCTC	3 cut(s)	26, 197, 798
BstMBI	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
BstMCI	CGRYCG	1 cut(s)	295
BstNI	CCWGG	2 cut(s)	198, 947
BstSCI	CCNGG	3 cut(s)	196, 233, 945
BstSFI	CTRYAG	1 cut(s)	889
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	451, 941
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	4 cut(s)	391, 400, 463, 942
Cac8I	GCNNGC	2 cut(s)	130, 667
CfoI	GCGC	4 cut(s)	9, 159, 246, 917
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	4 cut(s)	493, 655, 827, 847
CviAII	CATG	1 cut(s)	875
CviJI	RGCY	9 cut(s)	115, 128, 196, 257, 451, 485, 694, 785, 941
CviKI_1	RGCY	9 cut(s)	115, 128, 196, 257, 451, 485, 694, 785, 941
CviQI	GTAC	4 cut(s)	493, 655, 827, 847
DdeI	CTNAG	1 cut(s)	813
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	6 cut(s)	294, 311, 587, 732, 842, 912
DpnII	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	4 cut(s)	81, 353, 410, 636
EarI	CTCTTC	4 cut(s)	81, 353, 410, 636
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	743
Eco24I	GRGCYC	2 cut(s)	117, 696
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	198, 471
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	196, 945
EcoT14I	CCWWGG	1 cut(s)	743
EcoT38I	GRGCYC	2 cut(s)	117, 696
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	743
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	878
FaiI	YATR	4 cut(s)	39, 422, 789, 876
FatI	CATG	1 cut(s)	874
FauI	CCCGC	3 cut(s)	33, 68, 273
Fnu4HI	GCNGC	3 cut(s)	5, 258, 261
FokI	GGATG	4 cut(s)	398, 407, 470, 929
FriOI	GRGCYC	2 cut(s)	117, 696
Fsp4HI	GCNGC	3 cut(s)	5, 258, 261
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	4 cut(s)	8, 158, 245, 916
GluI	GCNGC	3 cut(s)	5, 258, 261
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	451, 941
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	4 cut(s)	9, 159, 246, 917
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	878
Hin6I	GCGC	4 cut(s)	7, 157, 244, 915
HinP1I	GCGC	4 cut(s)	7, 157, 244, 915
HinfI	GANTC	6 cut(s)	107, 220, 284, 478, 511, 871
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	3 cut(s)	200, 589, 611
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	96, 499
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	2 cut(s)	220, 310
HpyAV	CCTTC	4 cut(s)	20, 548, 574, 673
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	4 cut(s)	206, 276, 299, 519
HpyCH4V	TGCA	3 cut(s)	52, 891, 933
HpyF3I	CTNAG	1 cut(s)	813
HpySE526I	ACGT	4 cut(s)	206, 276, 299, 519
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	878
HspAI	GCGC	4 cut(s)	7, 157, 244, 915
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	2 cut(s)	112, 137
LpnPI	CCDG	6 cut(s)	183, 210, 225, 248, 823, 932
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	4 cut(s)	206, 276, 299, 519
MaeIII	GTNAC	2 cut(s)	188, 285
MalI	GATC	6 cut(s)	294, 311, 587, 732, 842, 912
MboI	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
MboII	GAAGA	8 cut(s)	68, 191, 281, 352, 370, 427, 623, 906
MfeI	CAATTG	2 cut(s)	571, 589
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	2 cut(s)	117, 696
MluCI	AATT	5 cut(s)	330, 571, 589, 673, 897
Mly113I	GGCGCC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	435, 842
MroXI	GAANNNNTTC	1 cut(s)	901
MseI	TTAA	2 cut(s)	753, 795
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	198, 235, 947
MunI	CAATTG	2 cut(s)	571, 589
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	198, 947
MvnI	CGCG	1 cut(s)	915
NarI	GGCGCC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
NlaIII	CATG	1 cut(s)	878
NlaIV	GGNNCC	3 cut(s)	114, 158, 904
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	188, 285
NspV	TTCGAA	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	5 cut(s)	189, 198, 212, 305, 525
PctI	GAATGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	901
PfeI	GAWTC	5 cut(s)	107, 220, 478, 511, 871
PfoI	TCCNGGA	1 cut(s)	945
PkrI	GCNGC	3 cut(s)	6, 259, 262
Ple19I	CGATCG	1 cut(s)	295
PleI	GAGTC	1 cut(s)	292
PluTI	GGCGCC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	196, 945
PspGI	CCWGG	2 cut(s)	196, 945
PspN4I	GGNNCC	3 cut(s)	114, 158, 904
PstI	CTGCAG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	840
PvuI	CGATCG	1 cut(s)	295
RsaI	GTAC	4 cut(s)	494, 656, 828, 848
RsaNI	GTAC	4 cut(s)	493, 655, 827, 847
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	753, 795
SatI	GCNGC	3 cut(s)	5, 258, 261
Sau3AI	GATC	6 cut(s)	292, 309, 585, 730, 840, 910
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	198, 235, 947
SduI	GDGCHC	2 cut(s)	117, 696
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	889
SfoI	GGCGCC	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	514
Sse9I	AATT	5 cut(s)	330, 571, 589, 673, 897
SsiI	CCGC	7 cut(s)	26, 55, 61, 260, 263, 280, 704
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	744
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	3 cut(s)	196, 233, 945
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	4 cut(s)	209, 279, 302, 522
TaqI	TCGA	7 cut(s)	95, 291, 308, 498, 514, 696, 733
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	5 cut(s)	330, 571, 589, 673, 897
TatI	WGTACW	2 cut(s)	492, 846
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	107, 220, 478, 511, 871
Tru1I	TTAA	2 cut(s)	753, 795
Tru9I	TTAA	2 cut(s)	753, 795
TseFI	GTSAC	2 cut(s)	188, 285
TseI	GCWGC	2 cut(s)	4, 257
Tsp45I	GTSAC	2 cut(s)	188, 285
TspDTI	ATGAA	2 cut(s)	371, 863
TspGWI	ACGGA	1 cut(s)	883
XmaJI	CCTAGG	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	901
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.