Rh6CG305500

chloroplast organization

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
48638030 .. 48641176
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG305500.1

Sequence Viewer

Length: 1122 bp
ATGTATGCACAATTTCCTCATAAATTATTCTCTGTCAATAATCGATATTCAAGCTATGCAATTGATCATAAACACCTGGTGTGCTCACTCAGACTGATTCGAAAGCCACCACAAAAAATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCCCTACTCTGTACCCGCGCTCCGTTATCCCTTTCTTGCCTCGCCGTGTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACCGAGCCAAGCCGAAACCCCGTCGCCGGAAAACCGCGGCCGGCGGAAACGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTTCCGCCGTTGACGACGGCGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCCAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCCTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCGGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCATGTTGGCAGCATGCAACACCGGGGACTAGGTTGTATTTGCAGTGCAAAACTGGGTATGTGGATCATCCGGTGATGAGCAACCTGCATGAGATTCTACTATAG

Protein Analysis

373

Amino Acids

43.31

Weight (kDa)

7.61

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 1110
AccII CGCG 4 cut(s) 180, 278, 342, 605
AclWI GGATC 2 cut(s) 944, 1089
AcoI YGGCCR 2 cut(s) 279, 545
AcsI RAATTY 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 2 cut(s) 175, 944
AfiI CCNNNNNNNGG 3 cut(s) 267, 342, 828
AgsI TTSAA 4 cut(s) 51, 131, 784, 892
AjnI CCWGG 3 cut(s) 75, 414, 839
AluBI AGCT 5 cut(s) 54, 470, 705, 764, 790
AluI AGCT 5 cut(s) 54, 470, 705, 764, 790
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 3 cut(s) 506, 527, 894
AlwI GGATC 2 cut(s) 944, 1089
AoxI GGCC 5 cut(s) 157, 279, 545, 879, 1016
ApeKI GCWGC 4 cut(s) 121, 761, 832, 1027
ApoI RAATTY 1 cut(s) 132
AseI ATTAAT 1 cut(s) 684
AspLEI GCGC 4 cut(s) 126, 182, 342, 994
AspS9I GGNCC 2 cut(s) 158, 241
AsuC2I CCSGG 4 cut(s) 239, 337, 428, 1041
AsuHPI GGTGA 2 cut(s) 131, 1102
AsuII TTCGAA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 909
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 108, 773, 819, 1039
BceAI ACGGC 6 cut(s) 172, 191, 461, 502, 531, 981
BcgI CGANNNNNNTGC 4 cut(s) 590, 624, 962, 996
BciT130I CCWGG 3 cut(s) 77, 416, 841
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 4 cut(s) 239, 337, 428, 1041
BcoDI GTCTC 3 cut(s) 506, 527, 894
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 1 cut(s) 1118
BfuAI ACCTGC 1 cut(s) 1110
BglI GCCNNNNNGGC 1 cut(s) 1024
BisI GCNGC 8 cut(s) 122, 279, 360, 363, 548, 762, 833, 1028
BlsI GCNGC 8 cut(s) 123, 280, 361, 364, 549, 763, 834, 1029
Bme1390I CCNGG 7 cut(s) 77, 239, 337, 416, 428, 841, 1041
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 158, 241
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 7 cut(s) 77, 239, 337, 416, 428, 841, 1041
BmrI ACTGGG 2 cut(s) 714, 1080
BmsI GCATC 2 cut(s) 544, 808
BmuI ACTGGG 2 cut(s) 714, 1080
BpiI GAAGAC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 4 cut(s) 239, 337, 428, 1041
Bsa29I ATCGAT 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 276, 326, 839, 1040
BsaWI WCCGGW 2 cut(s) 396, 1087
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 342, 828
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 720, 1075
Bse21I CCTNAGG 1 cut(s) 909
BseBI CCWGG 3 cut(s) 77, 416, 841
BseCI ATCGAT 1 cut(s) 43
BseDI CCNNGG 4 cut(s) 276, 326, 839, 1040
BseGI GGATG 5 cut(s) 559, 628, 715, 823, 1084
BseLI CCNNNNNNNGG 3 cut(s) 267, 342, 828
BseMII CTCAG 4 cut(s) 103, 756, 914, 923
BseNI ACTGG 2 cut(s) 720, 1075
BseRI GAGGAG 4 cut(s) 364, 524, 542, 545
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 4 cut(s) 108, 773, 819, 1039
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 4 cut(s) 180, 278, 342, 605
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 5 cut(s) 159, 281, 547, 881, 1018
BshVI ATCGAT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 8 cut(s) 239, 268, 282, 337, 397, 428, 1040, 1088
BslFI GGGAC 2 cut(s) 398, 1057
BslI CCNNNNNNNGG 3 cut(s) 267, 342, 828
BsmAI GTCTC 3 cut(s) 506, 527, 894
BsmBI CGTCTC 2 cut(s) 506, 527
BsmFI GGGAC 2 cut(s) 398, 1057
BsnI GGCC 5 cut(s) 159, 281, 547, 881, 1018
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 86, 234
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 4 cut(s) 64, 826, 936, 1081
BspANI GGCC 5 cut(s) 159, 281, 547, 881, 1018
BspCNI CTCAG 4 cut(s) 102, 757, 915, 922
BspDI ATCGAT 1 cut(s) 43
BspFNI CGCG 4 cut(s) 180, 278, 342, 605
BspLI GGNNCC 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 1110
BspPI GGATC 2 cut(s) 944, 1089
BspT104I TTCGAA 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 2 cut(s) 720, 1075
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 4 cut(s) 276, 326, 839, 1040
BssMI GATC 4 cut(s) 64, 826, 936, 1081
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 3 cut(s) 77, 416, 841
Bst4CI ACNGT 1 cut(s) 905
BstACI GRCGYC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 4 cut(s) 283, 344, 603, 1032
BstDEI CTNAG 4 cut(s) 89, 765, 909, 923
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 5 cut(s) 559, 628, 715, 823, 1084
BstFNI CGCG 4 cut(s) 180, 278, 342, 605
BstHHI GCGC 4 cut(s) 126, 182, 342, 994
BstKTI GATC 4 cut(s) 67, 829, 939, 1084
BstMAI GTCTC 3 cut(s) 506, 527, 894
BstMBI GATC 4 cut(s) 64, 826, 936, 1081
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 989, 1024
BstNI CCWGG 3 cut(s) 77, 416, 841
BstNSI RCATGY 1 cut(s) 1034
BstSCI CCNGG 7 cut(s) 75, 237, 335, 414, 426, 839, 1039
BstSFI CTRYAG 1 cut(s) 1118
BstUI CGCG 4 cut(s) 180, 278, 342, 605
BstV1I GCAGC 4 cut(s) 108, 773, 819, 1039
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 936
BstYI RGATCY 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 909
BsuRI GGCC 5 cut(s) 159, 281, 547, 881, 1018
BsuTUI ATCGAT 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 5 cut(s) 559, 628, 715, 823, 1084
BtsI GCAGTG 1 cut(s) 1067
BtsIMutI CAGTG 1 cut(s) 1067
BveI ACCTGC 1 cut(s) 1110
Cac8I GCNNGC 4 cut(s) 283, 344, 603, 1032
CfoI GCGC 4 cut(s) 126, 182, 342, 994
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 158, 241
Cfr42I CCGCGG 1 cut(s) 279
ClaI ATCGAT 1 cut(s) 43
CpoI CGGWCCG 1 cut(s) 241
CseI GACGC 1 cut(s) 570
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 2 cut(s) 174, 943
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 6 cut(s) 148, 859, 985, 1020, 1031, 1106
CviQI GTAC 2 cut(s) 174, 943
DdeI CTNAG 4 cut(s) 89, 765, 909, 923
DpnI GATC 4 cut(s) 66, 828, 938, 1083
DpnII GATC 4 cut(s) 64, 826, 936, 1081
DraIII CACNNNGTG 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 279, 545
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 5 cut(s) 300, 312, 361, 463, 983
EclXI CGGCCG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 909
EcoRII CCWGG 3 cut(s) 75, 414, 839
EcoT38I GRGCYC 1 cut(s) 234
Esp3I CGTCTC 2 cut(s) 506, 527
FaeI CATG 6 cut(s) 151, 862, 988, 1023, 1034, 1109
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 2 cut(s) 398, 1057
FatI CATG 6 cut(s) 147, 858, 984, 1019, 1030, 1105
FauI CCCGC 2 cut(s) 185, 335
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 8 cut(s) 122, 279, 360, 363, 548, 762, 833, 1028
FokI GGATG 5 cut(s) 566, 635, 702, 830, 1071
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 8 cut(s) 122, 279, 360, 363, 548, 762, 833, 1028
FspBI CTAG 1 cut(s) 1047
FspI TGCGCA 1 cut(s) 993
GlaI GCGC 4 cut(s) 125, 181, 341, 993
GluI GCNGC 8 cut(s) 122, 279, 360, 363, 548, 762, 833, 1028
HaeIII GGCC 5 cut(s) 159, 281, 547, 881, 1018
HapII CCGG 8 cut(s) 239, 268, 282, 337, 397, 428, 1040, 1088
HgaI GACGC 1 cut(s) 570
HhaI GCGC 4 cut(s) 126, 182, 342, 994
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 6 cut(s) 151, 862, 988, 1023, 1034, 1109
Hin6I GCGC 4 cut(s) 124, 180, 340, 992
HinP1I GCGC 4 cut(s) 124, 180, 340, 992
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 2 cut(s) 468, 703
HinfI GANTC 6 cut(s) 97, 224, 322, 607, 958, 1111
HpaII CCGG 8 cut(s) 239, 268, 282, 337, 397, 428, 1040, 1088
HphI GGTGA 2 cut(s) 131, 1102
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 8 cut(s) 92, 223, 229, 327, 586, 612, 924, 963
Hpy188III TCNNGA 4 cut(s) 213, 319, 439, 745
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 4 cut(s) 267, 488, 494, 586
HpyCH4III ACNGT 1 cut(s) 905
HpyCH4IV ACGT 3 cut(s) 378, 401, 615
HpyCH4V TGCA 9 cut(s) 8, 59, 154, 370, 1010, 1034, 1060, 1065, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 989, 1024
HpyF3I CTNAG 4 cut(s) 89, 765, 909, 923
HpySE526I ACGT 3 cut(s) 378, 401, 615
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 6 cut(s) 151, 862, 988, 1023, 1034, 1109
HspAI GCGC 4 cut(s) 124, 180, 340, 992
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 64
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 4 cut(s) 64, 826, 936, 1081
LmnI GCTCC 5 cut(s) 187, 229, 351, 418, 787
Lsp1109I GCAGC 4 cut(s) 108, 773, 819, 1039
LweI GCATC 2 cut(s) 544, 808
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 3 cut(s) 378, 401, 615
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 66, 828, 938, 1083
MboI GATC 4 cut(s) 64, 826, 936, 1081
MboII GAAGA 3 cut(s) 343, 454, 862
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 2 cut(s) 86, 234
MmeI TCCRAC 1 cut(s) 564
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 2 cut(s) 405, 684
MspA1I CMGCKG 3 cut(s) 278, 550, 764
MspI CCGG 8 cut(s) 239, 268, 282, 337, 397, 428, 1040, 1088
MspR9I CCNGG 7 cut(s) 77, 239, 337, 416, 428, 841, 1041
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 3 cut(s) 77, 416, 841
MvnI CGCG 4 cut(s) 180, 278, 342, 605
MwoI GCNNNNNNNGC 2 cut(s) 989, 1024
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 4 cut(s) 239, 337, 428, 1041
NdeII GATC 4 cut(s) 64, 826, 936, 1081
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 6 cut(s) 151, 862, 988, 1023, 1034, 1109
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 137
NsbI TGCGCA 1 cut(s) 993
NspI RCATGY 1 cut(s) 1034
NspV TTCGAA 1 cut(s) 100
PaeI GCATGC 1 cut(s) 1034
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 6 cut(s) 97, 224, 322, 607, 958, 1111
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 8 cut(s) 123, 280, 361, 364, 549, 763, 834, 1029
Ppu21I YACGTR 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 75, 414, 839
PspGI CCWGG 3 cut(s) 75, 414, 839
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 158, 241
PsuI RGATCY 1 cut(s) 936
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 2 cut(s) 175, 944
RsaNI GTAC 2 cut(s) 174, 943
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SacII CCGCGG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 405, 684
SatI GCNGC 8 cut(s) 122, 279, 360, 363, 548, 762, 833, 1028
Sau3AI GATC 4 cut(s) 64, 826, 936, 1081
Sau96I GGNCC 2 cut(s) 158, 241
ScrFI CCNGG 7 cut(s) 77, 239, 337, 416, 428, 841, 1041
SduI GDGCHC 2 cut(s) 86, 234
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 2 cut(s) 544, 808
SfcI CTRYAG 1 cut(s) 1118
Sfr303I CCGCGG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 279
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
SphI GCATGC 1 cut(s) 1034
SspI AATATT 1 cut(s) 865
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 7 cut(s) 75, 237, 335, 414, 426, 839, 1039
TaaI ACNGT 1 cut(s) 905
TaiI ACGT 3 cut(s) 381, 404, 618
TaqI TCGA 5 cut(s) 43, 100, 212, 438, 744
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 1 cut(s) 942
TauI GCSGC 4 cut(s) 281, 362, 365, 550
TfiI GAWTC 6 cut(s) 97, 224, 322, 607, 958, 1111
Tru1I TTAA 2 cut(s) 405, 684
Tru9I TTAA 2 cut(s) 405, 684
TscAI CASTG 1 cut(s) 1067
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 121, 761, 832, 1027
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 473, 639, 704, 875
TspGWI ACGGA 2 cut(s) 174, 551
TspRI CASTG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 1034
XspI CTAG 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.