Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

29673475 .. 29678436

Gene Structure 4962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0187200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGACGAAGCAATCTAAAGCCAAGAAATTGGATAATTTGGGAAAGGGTACCGTCACACCCGTGCAGATCGCCTTCCTCGTCAACCAGTTTCTCTTTGATAACAGCTACACCGAAGCCTGCTTCGTTTTCCGAACTAAAGCCTCCTCACTCTTCTCTACGTCTCCGATTCAAGAGGAAAGTTTGCGATGGGTCGACACGAAGATCCAAAGAGATGTTTCTGTGGATATCAACAAGAAAAGGATAATTGTAACCCCTATTCTGAGATTGGTGTTTTGTATGTTGCCTCTAGTTGCTACATCTGAATTTTACGAGGAAGACACTTTCCAAGCTGTTGAGATGGTGACGGAGCAAATAAACCTGTTGTTGGCTTGGCAAGTAGTGTTTCATCATCTGACAATATACAGAAAAGGTCAGTATGTTGAGCCTTATTCAGATACAGAAGAAGACAAAGCTGCAGCAAAAAGAATTTTAGACTTCGAACTTAGATGGTTTATGGAACCAATAGTATTTGGAGATTATCCAAAGATTATGAGAGATTTGGTCAAGGAAAGGCTACCCCTTTTCACCGAAGAAGAGAAAAAATTGATTAAGGGATCCTTCGATTTCATTGGCATCAACTATTATACCACGAGATATGGTAAAAACGTTCCAGCAAGTCAAGCTGAACCATTGAGTTATCACAATGACGTCTTGGCTACATCAACTGAAACAAATGCAAATGGAGTCTTAATTGGTCCTCATGCTGATGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAGAAACTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCTGAAAATGGAATTACAGAAGAAAAGGACGATAATCTTGGACTAGATGTAGCAGTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTACCGGATCAGGATGGCAATGAAGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCTATTCGATGACTTTGAGTGGGGGAAGGCTATCTTGCAAGTTCGGACTTTACTATGGTATGTGGAAGCGACACGGCTGGGTTTTAGGAAGTGGTTTTCTTGTGCTTTTAAGGCTATGGATTCATTTGAGCCTGATGGAAATGGGACAAATGGATCAAATGGAGAGAACGACGCAAATGTAGAAAACGACGCAAATGGAGAAAACAGGGCAGATGGAAACGGGGCAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCATGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAAATTGTGCGCCTACCAATTGCTACGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCTAATAGATTTAAATCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

464

Amino Acids

52.84

Weight (kDa)

5.94

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	133 - 354	9.2e-47	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	690
Acc65I	GGTACC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	1339
AclI	AACGTT	1 cut(s)	645
AclWI	GGATC	7 cut(s)	196, 588, 601, 893, 906, 947, 1153
AcsI	RAATTY	2 cut(s)	302, 465
AcuI	CTGAAG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	2 cut(s)	49, 935
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	170, 914
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	4 cut(s)	105, 329, 452, 662
AluI	AGCT	4 cut(s)	105, 329, 452, 662
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	7 cut(s)	196, 588, 601, 893, 906, 947, 1153
AoxI	GGCC	1 cut(s)	1342
ApeKI	GCWGC	2 cut(s)	452, 455
ApoI	RAATTY	2 cut(s)	302, 465
Asp700I	GAANNNNTTC	1 cut(s)	918
Asp718I	GGTACC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	1323
AspS9I	GGNCC	1 cut(s)	734
AsuHPI	GGTGA	3 cut(s)	352, 556, 976
AsuII	TTCGAA	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	734
BaeI	ACNNNNGTAYC	2 cut(s)	917, 950
BamHI	GGATCC	2 cut(s)	593, 898
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	994
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BauI	CACGAG	1 cut(s)	628
BbsI	GAAGAC	3 cut(s)	321, 450, 773
BbvI	GCAGC	2 cut(s)	439, 467
BccI	CCATC	7 cut(s)	180, 331, 480, 740, 940, 1121, 1199
BceAI	ACGGC	1 cut(s)	1082
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	287, 881
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	453, 456
BlsI	GCNGC	2 cut(s)	454, 457
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	4 cut(s)	49, 498, 595, 900
BmrI	ACTGGG	1 cut(s)	997
BmsI	GCATC	2 cut(s)	621, 762
BmuI	ACTGGG	1 cut(s)	997
BpiI	GAAGAC	3 cut(s)	321, 450, 773
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	1263
BsaBI	GATNNNNATC	1 cut(s)	1380
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	1345
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	85, 992
Bse3DI	GCAATG	3 cut(s)	957, 1226, 1268
Bse8I	GATNNNNATC	1 cut(s)	1380
BseDI	CCNNGG	1 cut(s)	1345
BseGI	GGATG	1 cut(s)	951
BseJI	GATNNNNATC	1 cut(s)	1380
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	3 cut(s)	957, 1226, 1268
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	85, 992
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	439, 467
BseYI	CCCAGC	1 cut(s)	1069
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	1339
BshFI	GGCC	1 cut(s)	1344
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	1 cut(s)	1150
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	1150
BsmI	GAATGC	2 cut(s)	918, 920
BsnI	GGCC	1 cut(s)	1344
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
BspANI	GGCC	1 cut(s)	1344
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	1339
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	4 cut(s)	49, 498, 595, 900
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	7 cut(s)	196, 588, 601, 893, 906, 947, 1153
BspT104I	TTCGAA	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	957, 1226, 1268
BsrI	ACTGG	2 cut(s)	85, 992
BssECI	CCNNGG	1 cut(s)	1345
BssMI	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
BssNI	GRCGYC	1 cut(s)	687
BssSI	CACGAG	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	1345
Bst2BI	CACGAG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	155, 567
BstACI	GRCGYC	1 cut(s)	687
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	118, 1275
BstDEI	CTNAG	2 cut(s)	260, 482
BstF5I	GGATG	1 cut(s)	951
BstFNI	CGCG	1 cut(s)	1339
BstHHI	GCGC	1 cut(s)	1323
BstKTI	GATC	6 cut(s)	69, 204, 596, 901, 942, 1148
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
BstMWI	GCNNNNNNNGC	3 cut(s)	659, 1103, 1223
BstNSI	RCATGY	2 cut(s)	1226, 1277
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	1339
BstV1I	GCAGC	2 cut(s)	439, 467
BstV2I	GAAGAC	3 cut(s)	321, 450, 773
BstX2I	RGATCY	3 cut(s)	201, 593, 898
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	3 cut(s)	201, 593, 898
BsuRI	GGCC	1 cut(s)	1344
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	951
BtsIMutI	CAGTG	1 cut(s)	985
Cac8I	GCNNGC	2 cut(s)	118, 1275
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	1323
Cfr13I	GGNCC	1 cut(s)	734
CseI	GACGC	2 cut(s)	1172, 1190
Csp6I	GTAC	2 cut(s)	48, 934
CviAII	CATG	4 cut(s)	740, 802, 1223, 1274
CviQI	GTAC	2 cut(s)	48, 934
DdeI	CTNAG	2 cut(s)	260, 482
DpnI	GATC	6 cut(s)	68, 203, 595, 900, 941, 1147
DpnII	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
DraI	TTTAAA	2 cut(s)	1305, 1380
Eam1104I	CTCTTC	2 cut(s)	155, 567
EarI	CTCTTC	2 cut(s)	155, 567
Eco130I	CCWWGG	1 cut(s)	1345
Eco147I	AGGCCT	1 cut(s)	1344
Eco24I	GRGCYC	1 cut(s)	994
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	767
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	1345
EcoT22I	ATGCAT	2 cut(s)	920, 1228
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	1 cut(s)	1345
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	4 cut(s)	743, 805, 1226, 1277
FalI	AAGNNNNNCTT	4 cut(s)	581, 613, 1010, 1042
FaqI	GGGAC	1 cut(s)	1150
FatI	CATG	4 cut(s)	739, 801, 1222, 1273
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	453, 456
FokI	GGATG	1 cut(s)	958
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	2 cut(s)	453, 456
FspBI	CTAG	2 cut(s)	287, 881
GlaI	GCGC	1 cut(s)	1322
GluI	GCNGC	2 cut(s)	453, 456
GsaI	CCCAGC	1 cut(s)	1073
HaeIII	GGCC	1 cut(s)	1344
HapII	CCGG	1 cut(s)	937
HgaI	GACGC	2 cut(s)	1172, 1190
HhaI	GCGC	1 cut(s)	1323
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	4 cut(s)	743, 805, 1226, 1277
Hin6I	GCGC	1 cut(s)	1321
HinP1I	GCGC	1 cut(s)	1321
HincII	GTYRAC	2 cut(s)	82, 193
HindII	GTYRAC	2 cut(s)	82, 193
HinfI	GANTC	4 cut(s)	166, 723, 1112, 1366
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	3 cut(s)	352, 556, 976
Hpy166II	GTNNAC	2 cut(s)	82, 193
Hpy188I	TCNGA	9 cut(s)	131, 165, 261, 301, 393, 433, 786, 841, 1038
Hpy188III	TCNNGA	3 cut(s)	170, 802, 943
Hpy8I	GTNNAC	2 cut(s)	82, 193
Hpy99I	CGWCG	2 cut(s)	1166, 1184
HpyAV	CCTTC	3 cut(s)	82, 607, 1012
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	158, 645, 687
HpyCH4V	TGCA	7 cut(s)	64, 455, 716, 918, 1030, 1226, 1273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	659, 1103, 1223
HpyF3I	CTNAG	2 cut(s)	260, 482
HpySE526I	ACGT	3 cut(s)	158, 645, 687
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	4 cut(s)	743, 805, 1226, 1277
HspAI	GCGC	1 cut(s)	1321
KpnI	GGTACC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	439, 467
LweI	GCATC	2 cut(s)	621, 762
MaeI	CTAG	2 cut(s)	287, 881
MaeII	ACGT	3 cut(s)	158, 645, 687
MaeIII	GTNAC	3 cut(s)	52, 247, 340
MalI	GATC	6 cut(s)	68, 203, 595, 900, 941, 1147
MboI	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
MfeI	CAATTG	1 cut(s)	1329
MflI	RGATCY	3 cut(s)	201, 593, 898
MhlI	GDGCHC	1 cut(s)	994
MlyI	GAGTC	1 cut(s)	732
MnlI	CCTC	8 cut(s)	86, 151, 154, 166, 294, 304, 747, 1334
Mph1103I	ATGCAT	2 cut(s)	920, 1228
MroXI	GAANNNNTTC	1 cut(s)	918
MseI	TTAA	5 cut(s)	588, 728, 1101, 1304, 1379
MslI	CAYNNNNRTG	2 cut(s)	59, 744
MspI	CCGG	1 cut(s)	937
MunI	CAATTG	1 cut(s)	1329
Mva1269I	GAATGC	2 cut(s)	918, 920
MvnI	CGCG	1 cut(s)	1339
MwoI	GCNNNNNNNGC	3 cut(s)	659, 1103, 1223
NdeII	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
NlaIII	CATG	4 cut(s)	743, 805, 1226, 1277
NlaIV	GGNNCC	4 cut(s)	49, 498, 595, 900
NmuCI	GTSAC	2 cut(s)	52, 340
NsiI	ATGCAT	2 cut(s)	920, 1228
NspI	RCATGY	2 cut(s)	1226, 1277
NspV	TTCGAA	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	1 cut(s)	1344
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	918, 920
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	3 cut(s)	166, 1112, 1366
PkrI	GCNGC	2 cut(s)	454, 457
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Psp1406I	AACGTT	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	1069
PspN4I	GGNNCC	4 cut(s)	49, 498, 595, 900
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	3 cut(s)	201, 593, 898
RsaI	GTAC	2 cut(s)	49, 935
RsaNI	GTAC	2 cut(s)	48, 934
RseI	CAYNNNNRTG	2 cut(s)	59, 744
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	5 cut(s)	588, 728, 1101, 1304, 1379
SatI	GCNGC	2 cut(s)	453, 456
Sau3AI	GATC	6 cut(s)	66, 201, 593, 898, 939, 1145
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	1 cut(s)	732
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	2 cut(s)	621, 762
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	1 cut(s)	734
SmiI	ATTTAAAT	1 cut(s)	1380
SmiMI	CAYNNNNRTG	2 cut(s)	59, 744
SmlI	CTYRAG	1 cut(s)	1278
SmoI	CTYRAG	1 cut(s)	1278
SphI	GCATGC	1 cut(s)	1277
SseBI	AGGCCT	1 cut(s)	1344
SspMI	CTAG	2 cut(s)	287, 881
StuI	AGGCCT	1 cut(s)	1344
StyI	CCWWGG	1 cut(s)	1345
SwaI	ATTTAAAT	1 cut(s)	1380
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	161, 648, 690
TaqI	TCGA	5 cut(s)	192, 477, 600, 925, 999
TfiI	GAWTC	3 cut(s)	166, 1112, 1366
Tru1I	TTAA	5 cut(s)	588, 728, 1101, 1304, 1379
Tru9I	TTAA	5 cut(s)	588, 728, 1101, 1304, 1379
TscAI	CASTG	1 cut(s)	992
TseFI	GTSAC	2 cut(s)	52, 340
TseI	GCWGC	2 cut(s)	452, 455
Tsp45I	GTSAC	2 cut(s)	52, 340
TspDTI	ATGAA	6 cut(s)	374, 595, 790, 818, 968, 1104
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	2 cut(s)	302, 465
XceI	RCATGY	2 cut(s)	1226, 1277
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	2 cut(s)	287, 881
ZraI	GACGTC	1 cut(s)	688
Zsp2I	ATGCAT	2 cut(s)	920, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.