Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

53447623 .. 53448763

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCTCTACTCTGTACCCGCGCTCCGATATCCCTTTCTTGCCGCGCCGTGTCGAGAAAGTCCGACTCGGAGCCCGACCCGGACCGAGCCAAGCCAAAACCCCGTCGCCGGAAAACCGCGGCCGGCGGAAATGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTGCCGCCGTTGACGGCGGCGACGACGACGACGAAGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCCAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCCTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCAGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCGTCCTGGATTGATGTGAAGGAGCTAACTCTGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.59

Weight (kDa)

5.55

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	885
AccII	CGCG	5 cut(s)	63, 87, 161, 225, 497
AclWI	GGATC	1 cut(s)	836
AcoI	YGGCCR	2 cut(s)	162, 437
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	2 cut(s)	58, 836
AfiI	CCNNNNNNNGG	3 cut(s)	150, 225, 720
AgsI	TTSAA	3 cut(s)	14, 676, 784
AjnI	CCWGG	3 cut(s)	297, 731, 914
AluBI	AGCT	5 cut(s)	353, 597, 656, 682, 934
AluI	AGCT	5 cut(s)	353, 597, 656, 682, 934
Alw26I	GTCTC	3 cut(s)	398, 419, 786
AlwI	GGATC	1 cut(s)	836
AoxI	GGCC	5 cut(s)	40, 162, 437, 771, 908
ApeKI	GCWGC	4 cut(s)	4, 353, 653, 724
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	5 cut(s)	9, 65, 89, 225, 886
AspS9I	GGNCC	2 cut(s)	41, 124
AsuC2I	CCSGG	3 cut(s)	122, 220, 311
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	340, 665, 711
BceAI	ACGGC	7 cut(s)	55, 74, 344, 382, 423, 873, 895
BcgI	CGANNNNNNTGC	4 cut(s)	482, 516, 854, 888
BciT130I	CCWGG	3 cut(s)	299, 733, 916
BcnI	CCSGG	3 cut(s)	122, 220, 311
BcoDI	GTCTC	3 cut(s)	398, 419, 786
BfaI	CTAG	1 cut(s)	949
Bme1390I	CCNGG	6 cut(s)	122, 220, 299, 311, 733, 916
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	41, 124
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 733, 916
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	436, 700
BmuI	ACTGGG	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	3 cut(s)	122, 220, 311
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	159, 209, 731
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 443, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 225, 720
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	612
Bse21I	CCTNAGG	1 cut(s)	801
BseBI	CCWGG	3 cut(s)	299, 733, 916
BseDI	CCNNGG	3 cut(s)	159, 209, 731
BseGI	GGATG	4 cut(s)	451, 520, 607, 715
BseLI	CCNNNNNNNGG	3 cut(s)	150, 225, 720
BseMII	CTCAG	3 cut(s)	648, 806, 815
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	4 cut(s)	247, 416, 434, 437
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	340, 665, 711
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	5 cut(s)	63, 87, 161, 225, 497
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	42, 164, 439, 773, 910
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	150, 225, 720
BsmAI	GTCTC	3 cut(s)	398, 419, 786
BsmBI	CGTCTC	2 cut(s)	398, 419
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	42, 164, 439, 773, 910
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	718, 828
BspANI	GGCC	5 cut(s)	42, 164, 439, 773, 910
BspCNI	CTCAG	3 cut(s)	649, 807, 814
BspFNI	CGCG	5 cut(s)	63, 87, 161, 225, 497
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	836
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	159, 209, 731
BssMI	GATC	2 cut(s)	718, 828
BssNI	GRCGYC	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	299, 733, 916
Bst4CI	ACNGT	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	166, 227, 495
BstDEI	CTNAG	3 cut(s)	657, 801, 815
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	451, 520, 607, 715
BstFNI	CGCG	5 cut(s)	63, 87, 161, 225, 497
BstHHI	GCGC	5 cut(s)	9, 65, 89, 225, 886
BstKTI	GATC	2 cut(s)	721, 831
BstMAI	GTCTC	3 cut(s)	398, 419, 786
BstMBI	GATC	2 cut(s)	718, 828
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	881, 940
BstNI	CCWGG	3 cut(s)	299, 733, 916
BstSCI	CCNGG	6 cut(s)	120, 218, 297, 309, 731, 914
BstUI	CGCG	5 cut(s)	63, 87, 161, 225, 497
BstV1I	GCAGC	3 cut(s)	340, 665, 711
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	828
BstZI	CGGCCG	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	801
BsuRI	GGCC	5 cut(s)	42, 164, 439, 773, 910
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	451, 520, 607, 715
Cac8I	GCNNGC	3 cut(s)	166, 227, 495
CfoI	GCGC	5 cut(s)	9, 65, 89, 225, 886
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	41, 124
Cfr42I	CCGCGG	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	57, 835
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	3 cut(s)	31, 751, 877
CviQI	GTAC	2 cut(s)	57, 835
DdeI	CTNAG	3 cut(s)	657, 801, 815
DpnI	GATC	2 cut(s)	720, 830
DpnII	GATC	2 cut(s)	718, 828
EaeI	YGGCCR	2 cut(s)	162, 437
EagI	CGGCCG	1 cut(s)	162
EciI	GGCGGA	3 cut(s)	183, 195, 244
EclXI	CGGCCG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	801
EcoRII	CCWGG	3 cut(s)	297, 731, 914
EcoRV	GATATC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	2 cut(s)	398, 419
FaeI	CATG	3 cut(s)	34, 754, 880
FaiI	YATR	6 cut(s)	32, 645, 752, 777, 878, 946
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	30, 750, 876
FauI	CCCGC	2 cut(s)	68, 218
FokI	GGATG	4 cut(s)	458, 527, 594, 722
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	949
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	5 cut(s)	8, 64, 88, 224, 885
HaeIII	GGCC	5 cut(s)	42, 164, 439, 773, 910
HapII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	5 cut(s)	9, 65, 89, 225, 886
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	34, 754, 880
Hin6I	GCGC	5 cut(s)	7, 63, 87, 223, 884
HinP1I	GCGC	5 cut(s)	7, 63, 87, 223, 884
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	4 cut(s)	107, 205, 499, 850
HpaII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	8 cut(s)	69, 106, 112, 210, 478, 504, 816, 855
Hpy188III	TCNNGA	4 cut(s)	96, 202, 322, 637
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	6 cut(s)	150, 377, 380, 383, 386, 478
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	3 cut(s)	261, 284, 507
HpyCH4V	TGCA	3 cut(s)	37, 253, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	881, 940
HpyF3I	CTNAG	3 cut(s)	657, 801, 815
HpySE526I	ACGT	3 cut(s)	261, 284, 507
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	34, 754, 880
HspAI	GCGC	5 cut(s)	7, 63, 87, 223, 884
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	718, 828
LmnI	GCTCC	6 cut(s)	70, 112, 234, 301, 679, 931
Lsp1109I	GCAGC	3 cut(s)	340, 665, 711
LweI	GCATC	2 cut(s)	436, 700
MaeI	CTAG	1 cut(s)	949
MaeII	ACGT	3 cut(s)	261, 284, 507
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	720, 830
MboI	GATC	2 cut(s)	718, 828
MboII	GAAGA	3 cut(s)	226, 337, 754
MflI	RGATCY	1 cut(s)	828
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	7 cut(s)	15, 335, 433, 559, 577, 661, 866
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	129, 456
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	288, 576
MspA1I	CMGCKG	3 cut(s)	161, 442, 656
MspI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
MspR9I	CCNGG	6 cut(s)	122, 220, 299, 311, 733, 916
MvaI	CCWGG	3 cut(s)	299, 733, 916
MvnI	CGCG	5 cut(s)	63, 87, 161, 225, 497
MwoI	GCNNNNNNNGC	2 cut(s)	881, 940
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	3 cut(s)	122, 220, 311
NdeII	GATC	2 cut(s)	718, 828
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	34, 754, 880
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 381
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	205, 499, 850
PfoI	TCCNGGA	2 cut(s)	297, 914
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	297, 731, 914
PspGI	CCWGG	3 cut(s)	297, 731, 914
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	41, 124
PsuI	RGATCY	1 cut(s)	828
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	2 cut(s)	58, 836
RsaNI	GTAC	2 cut(s)	57, 835
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	288, 576
Sau3AI	GATC	2 cut(s)	718, 828
Sau96I	GGNCC	2 cut(s)	41, 124
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 733, 916
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	436, 700
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	15, 335, 433, 559, 577, 661, 866
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	1 cut(s)	949
StyD4I	CCNGG	6 cut(s)	120, 218, 297, 309, 731, 914
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	3 cut(s)	264, 287, 510
TaqI	TCGA	3 cut(s)	95, 321, 636
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	15, 335, 433, 559, 577, 661, 866
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	7 cut(s)	87, 164, 245, 248, 359, 372, 442
TfiI	GAWTC	3 cut(s)	205, 499, 850
Tru1I	TTAA	2 cut(s)	288, 576
Tru9I	TTAA	2 cut(s)	288, 576
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	4, 353, 653, 724
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	189, 356, 531, 596, 767
TspGWI	ACGGA	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	15
XspI	CTAG	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.