Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

32085128 .. 32086919

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1193000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTGCGCCATCAAACTTGTCTCCCGCCGATGCTACATATTTCCCCTCTGCACCGCACCCGCACTCTGAACTCTCTTCCTTGCTATGCTACTTCGAGAAAATTCGATTCGGAGCCCGACCTCATAGCTCGCTCCAATCCGAAACCGAAATATCGCAGCCGTAAAGCGGAAACTTCTGAACACGAAGGTGAAGAGCCAGGCGAGACGTTTCCAGCGACGATTCCGAGAAAGCCGCGGCGCGGGCGCAGGAGCGAAGCGGCTGCGGTTGAAGATTACATGCGGGAGTCACTTGATCGGACGTTTGCGTCGATCAGAGAGCAGAACCCAGAAATTGTTGAGAAGAAAGATGAAGTAATGAAGAGGAAAGTGGACGATGGTGAGGAGGAGGATGAGGAGGAGGAGGGTTTTGGAAGGGAGAAGAGCATGGTGGTTGAGGAAGAGAGCAAGGATTGGCCGTTGGATGCCGATGTGGGGTGGGGGATTCGGGCGTCGGAGTACTTCGAGAACCACCCAATTCGAAACGTGGTGGACGACAATGGGGTTGAGATTGATTGGGAAGGCGAGGTTGAAGACAATTGGGTGAAGGAGATCAACTGCTTGGAGTGGGAGAGCTTTGCTTTTCACCCAAGTCCTCTTCTTGTTCTTGTTTTCGCGAGGTACAACAGAGCAAGCGAGAATTGGAAGGCGTTGAAAGAGCTCGAAAAGGCGGTCAAGGTCTACTGGAATGCCAAAGATCGATTGCCTCCTCGGTCGGTTAAGATAGACATCAACATCGAGAGAGATTTGGCTTATGCTCTTAAAGTTAGAGACTGTCCTCAGATTTTGTTTGTACGAGGAAACAGGATCTTGTACAGAGAGAAAGATTCGGACTGCAGAAGAACTGGTTCCGATGATCGCGCATTTTTACTACAATGCAAAGAGGCCCTCCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

36.35

Weight (kDa)

5.26

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	4 cut(s)	235, 240, 653, 897
AclWI	GGATC	1 cut(s)	851
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	4 cut(s)	497, 659, 831, 851
AfiI	CCNNNNNNNGG	3 cut(s)	166, 239, 471
AgsI	TTSAA	3 cut(s)	269, 569, 691
AjnI	CCWGG	2 cut(s)	196, 927
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	128, 612, 697
AluI	AGCT	3 cut(s)	128, 612, 697
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	3 cut(s)	26, 197, 801
AlwI	GGATC	1 cut(s)	851
AoxI	GGCC	2 cut(s)	452, 921
ApeKI	GCWGC	3 cut(s)	4, 156, 260
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp700I	GAANNNNTTC	1 cut(s)	883
AspLEI	GCGC	4 cut(s)	9, 240, 246, 899
AspS9I	GGNCC	1 cut(s)	922
AsuHPI	GGTGA	4 cut(s)	200, 389, 592, 614
AsuII	TTCGAA	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	117, 699
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	168, 247
BccI	CCATC	2 cut(s)	18, 368
BceAI	ACGGC	2 cut(s)	144, 439
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	198, 929
BcoDI	GTCTC	3 cut(s)	26, 197, 801
BfmI	CTRYAG	1 cut(s)	871
BisI	GCNGC	6 cut(s)	5, 157, 233, 236, 258, 261
BlsI	GCNGC	6 cut(s)	6, 158, 234, 237, 259, 262
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	198, 929
BmgT120I	GGNCC	1 cut(s)	922
BmiI	GGNNCC	2 cut(s)	114, 886
BmrFI	CCNGG	2 cut(s)	198, 929
BmsI	GCATC	2 cut(s)	21, 451
BpiI	GAAGAC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	736
BsaBI	GATNNNNATC	1 cut(s)	764
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	233, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 239, 471
Bse1I	ACTGG	2 cut(s)	725, 886
Bse8I	GATNNNNATC	1 cut(s)	764
BseBI	CCWGG	2 cut(s)	198, 929
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	233, 746
BseGI	GGATG	2 cut(s)	394, 466
BseJI	GATNNNNATC	1 cut(s)	764
BseLI	CCNNNNNNNGG	3 cut(s)	166, 239, 471
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	2 cut(s)	725, 886
BseRI	GAGGAG	6 cut(s)	395, 398, 407, 410, 413, 735
BseXI	GCAGC	2 cut(s)	168, 247
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	4 cut(s)	235, 240, 653, 897
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	2 cut(s)	454, 923
BshVI	ATCGAT	1 cut(s)	736
BsiEI	CGRYCG	1 cut(s)	752
BsiHKAI	GWGCWC	1 cut(s)	699
BslI	CCNNNNNNNGG	3 cut(s)	166, 239, 471
BsmAI	GTCTC	3 cut(s)	26, 197, 801
BsmBI	CGTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	454, 923
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	117, 699
Bsp1407I	TGTACA	1 cut(s)	849
Bsp143I	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
Bsp68I	TCGCGA	1 cut(s)	653
BspANI	GGCC	2 cut(s)	454, 923
BspCNI	CTCAG	1 cut(s)	829
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	4 cut(s)	235, 240, 653, 897
BspLI	GGNNCC	2 cut(s)	114, 886
BspMAI	CTGCAG	1 cut(s)	875
BspPI	GGATC	1 cut(s)	851
BspQI	GCTCTTC	2 cut(s)	186, 413
BspT104I	TTCGAA	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	849
BsrI	ACTGG	2 cut(s)	725, 886
BssECI	CCNNGG	2 cut(s)	233, 746
BssMI	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
BssNI	GRCGYC	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	198, 929
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	6 cut(s)	81, 186, 353, 413, 432, 639
BstACI	GRCGYC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	849
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	130, 242, 670
BstDEI	CTNAG	1 cut(s)	816
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	394, 466
BstFNI	CGCG	4 cut(s)	235, 240, 653, 897
BstHHI	GCGC	4 cut(s)	9, 240, 246, 899
BstKTI	GATC	6 cut(s)	295, 312, 591, 736, 846, 895
BstMAI	GTCTC	3 cut(s)	26, 197, 801
BstMBI	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	198, 929
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	196, 927
BstSFI	CTRYAG	1 cut(s)	871
BstUI	CGCG	4 cut(s)	235, 240, 653, 897
BstV1I	GCAGC	2 cut(s)	168, 247
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	454, 923
BsuTUI	ATCGAT	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	394, 466
BtuMI	TCGCGA	1 cut(s)	653
Cac8I	GCNNGC	3 cut(s)	130, 242, 670
CfoI	GCGC	4 cut(s)	9, 240, 246, 899
Cfr13I	GGNCC	1 cut(s)	922
Cfr42I	CCGCGG	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	736
CseI	GACGC	2 cut(s)	294, 477
Csp6I	GTAC	4 cut(s)	496, 658, 830, 850
CviAII	CATG	2 cut(s)	277, 424
CviQI	GTAC	4 cut(s)	496, 658, 830, 850
DdeI	CTNAG	1 cut(s)	816
DpnI	GATC	6 cut(s)	294, 311, 590, 735, 845, 894
DpnII	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	6 cut(s)	81, 186, 353, 413, 432, 639
EarI	CTCTTC	6 cut(s)	81, 186, 353, 413, 432, 639
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	2 cut(s)	117, 699
Eco53kI	GAGCTC	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	2 cut(s)	196, 927
EcoT38I	GRGCYC	2 cut(s)	117, 699
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	2 cut(s)	280, 427
FaiI	YATR	6 cut(s)	39, 87, 125, 278, 425, 792
FatI	CATG	2 cut(s)	276, 423
FauI	CCCGC	4 cut(s)	33, 68, 233, 273
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	6 cut(s)	5, 157, 233, 236, 258, 261
FokI	GGATG	2 cut(s)	401, 473
FriOI	GRGCYC	2 cut(s)	117, 699
Fsp4HI	GCNGC	6 cut(s)	5, 157, 233, 236, 258, 261
GlaI	GCGC	4 cut(s)	8, 239, 245, 898
GluI	GCNGC	6 cut(s)	5, 157, 233, 236, 258, 261
HaeIII	GGCC	2 cut(s)	454, 923
HgaI	GACGC	2 cut(s)	294, 477
HhaI	GCGC	4 cut(s)	9, 240, 246, 899
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	280, 427
Hin6I	GCGC	4 cut(s)	7, 238, 244, 897
HinP1I	GCGC	4 cut(s)	7, 238, 244, 897
HinfI	GANTC	5 cut(s)	107, 220, 284, 481, 863
HphI	GGTGA	4 cut(s)	200, 389, 592, 614
Hpy166II	GTNNAC	3 cut(s)	370, 529, 718
Hpy188III	TCNNGA	4 cut(s)	96, 502, 652, 775
Hpy8I	GTNNAC	3 cut(s)	370, 529, 718
Hpy99I	CGWCG	3 cut(s)	220, 310, 493
HpyAV	CCTTC	5 cut(s)	179, 405, 551, 577, 676
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	3 cut(s)	206, 299, 522
HpyCH4V	TGCA	3 cut(s)	52, 873, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	816
HpySE526I	ACGT	3 cut(s)	206, 299, 522
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	2 cut(s)	280, 427
HspAI	GCGC	4 cut(s)	7, 238, 244, 897
KspI	CCGCGG	1 cut(s)	236
Kzo9I	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
LguI	GCTCTTC	2 cut(s)	186, 413
LmnI	GCTCC	3 cut(s)	112, 137, 249
LpnPI	CCDG	9 cut(s)	183, 210, 225, 232, 339, 706, 826, 867, 914
Lsp1109I	GCAGC	2 cut(s)	168, 247
LweI	GCATC	2 cut(s)	21, 451
MaeII	ACGT	3 cut(s)	206, 299, 522
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	6 cut(s)	294, 311, 590, 735, 845, 894
MboI	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	2 cut(s)	117, 699
MluCI	AATT	5 cut(s)	101, 330, 513, 574, 676
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	438, 471
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	2 cut(s)	756, 798
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	198, 929
MunI	CAATTG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	2 cut(s)	198, 929
MvnI	CGCG	4 cut(s)	235, 240, 653, 897
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
NlaIII	CATG	2 cut(s)	280, 427
NlaIV	GGNNCC	2 cut(s)	114, 886
NmuCI	GTSAC	1 cut(s)	285
NruI	TCGCGA	1 cut(s)	653
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	186
PciSI	GCTCTTC	2 cut(s)	186, 413
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 305, 528
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	4 cut(s)	107, 220, 481, 863
PfoI	TCCNGGA	1 cut(s)	927
PkrI	GCNGC	6 cut(s)	6, 158, 234, 237, 259, 262
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	196, 927
PspGI	CCWGG	2 cut(s)	196, 927
PspN4I	GGNNCC	2 cut(s)	114, 886
PspPI	GGNCC	1 cut(s)	922
PstI	CTGCAG	1 cut(s)	875
PsuI	RGATCY	1 cut(s)	843
RruI	TCGCGA	1 cut(s)	653
RsaI	GTAC	4 cut(s)	497, 659, 831, 851
RsaNI	GTAC	4 cut(s)	496, 658, 830, 850
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	699
SacII	CCGCGG	1 cut(s)	236
SapI	GCTCTTC	2 cut(s)	186, 413
SaqAI	TTAA	2 cut(s)	756, 798
SatI	GCNGC	6 cut(s)	5, 157, 233, 236, 258, 261
Sau3AI	GATC	6 cut(s)	292, 309, 588, 733, 843, 892
Sau96I	GGNCC	1 cut(s)	922
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	198, 929
SduI	GDGCHC	2 cut(s)	117, 699
SfaNI	GCATC	2 cut(s)	21, 451
SfcI	CTRYAG	1 cut(s)	871
Sfr303I	CCGCGG	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	517
SgrBI	CCGCGG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	5 cut(s)	101, 330, 513, 574, 676
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	196, 927
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	3 cut(s)	209, 302, 525
TaqI	TCGA	8 cut(s)	95, 105, 308, 501, 517, 699, 736, 774
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	5 cut(s)	101, 330, 513, 574, 676
TatI	WGTACW	2 cut(s)	495, 849
TauI	GCSGC	3 cut(s)	235, 238, 260
TfiI	GAWTC	4 cut(s)	107, 220, 481, 863
Tru1I	TTAA	2 cut(s)	756, 798
Tru9I	TTAA	2 cut(s)	756, 798
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	3 cut(s)	4, 156, 260
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	363, 371
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	883
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.