Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

17489832 .. 17492725

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTGAGCCTTCAACTTCGCCTCCCGCCCATATTCCACTGCCCTTCTCTACTCTCTACCCGCGCTCCCAAGTCTCTCTCTTGCCGCGCCGTTTCGAGAAAACCCGACCCGGAGCCCGACCCAGAGCGAGCCAAGCCAAAACCCCGCCGGAAAACCGCATCCAGCGGAAACGGCGGCGAACAAAAAGACCAGCCGTTTATAATTCCGAGGAAGCCGCGCCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGGAGGATTACGTGAGGGACACACTCAACCGGACGTTCGCCACAATCCGGAAGCAGAACCCGGAGATTTTCGAGGCCAAGGGAGAGCTGATGAAGGAGAAAGCCGCCGCCGTTGACGGCGGCGACGACGAGGAGGAGAGTGAGAGGGAGGAGGAGGACGAGGGGGTGGTGGAGGAGGAGACGGAGAATTGGCCGGTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTCGAGAAACATGGGATTCGAAACGTGGTGGATGAAAATGGAGATGAGATTGATTGGGAGGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAACTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTGTTTGTGTTTGAGAGATATAACAGGGCTGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGAATGCCAAAGATCGGCTGCCTCCGAGGTCTGTGAAGATTGATATCAATATAGAGAGGGATTTGGCGTATGCTTTGAAGGTTAGAGAATGTCCTCAGGTTTTGTTTTTGAGAGGGAACCGGATATTGTACCGGGAGAAAGAGATTCGGACTGCAGATGAATTGGTTGCCATGATTGCGCATTTTTATTACAATGCAAAGAGGCCGTCCTGGATTGATGTGAAGGAGCTAACTCTGCCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.67

Weight (kDa)

5.34

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
Acc16I	TGCGCA	1 cut(s)	885
AccII	CGCG	4 cut(s)	63, 87, 217, 222
AccIII	TCCGGA	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	2 cut(s)	836, 947
AfiI	CCNNNNNNNGG	3 cut(s)	221, 294, 720
AgsI	TTSAA	3 cut(s)	14, 676, 784
AjnI	CCWGG	1 cut(s)	914
AluBI	AGCT	4 cut(s)	334, 597, 682, 934
AluI	AGCT	4 cut(s)	334, 597, 682, 934
Alw26I	GTCTC	2 cut(s)	78, 419
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	3 cut(s)	321, 437, 908
ApeKI	GCWGC	2 cut(s)	653, 724
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspLEI	GCGC	4 cut(s)	65, 89, 219, 886
AsuC2I	CCSGG	3 cut(s)	110, 308, 839
AsuII	TTCGAA	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	640, 711
BceAI	ACGGC	7 cut(s)	74, 178, 187, 341, 379, 895, 928
BciT130I	CCWGG	1 cut(s)	916
BcnI	CCSGG	3 cut(s)	110, 308, 839
BcoDI	GTCTC	2 cut(s)	78, 419
BfaI	CTAG	1 cut(s)	949
BfmI	CTRYAG	1 cut(s)	858
BlpI	GCTNAGC	1 cut(s)	5
Bme1390I	CCNGG	4 cut(s)	110, 308, 839, 916
BmiI	GGNNCC	2 cut(s)	114, 824
BmrFI	CCNGG	4 cut(s)	110, 308, 839, 916
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	167, 436
BmuI	ACTGGG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	3 cut(s)	110, 308, 839
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	206, 220, 324, 731
BsaWI	WCCGGW	3 cut(s)	276, 294, 825
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 49, 79, 443, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 294, 720
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	612
Bse21I	CCTNAGG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	749
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	916
BseDI	CCNNGG	4 cut(s)	206, 220, 324, 731
BseGI	GGATG	4 cut(s)	158, 451, 520, 607
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	3 cut(s)	221, 294, 720
BseMII	CTCAG	2 cut(s)	648, 815
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	7 cut(s)	244, 392, 395, 410, 413, 434, 437
BseXI	GCAGC	2 cut(s)	640, 711
Bsh1236I	CGCG	4 cut(s)	63, 87, 217, 222
BshFI	GGCC	3 cut(s)	323, 439, 910
BsiSI	CCGG	8 cut(s)	110, 148, 277, 295, 308, 440, 826, 838
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	221, 294, 720
BsmAI	GTCTC	2 cut(s)	78, 419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	3 cut(s)	323, 439, 910
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	718
Bsp1720I	GCTNAGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	323, 439, 910
BspCNI	CTCAG	2 cut(s)	649, 814
BspEI	TCCGGA	1 cut(s)	294
BspFNI	CGCG	4 cut(s)	63, 87, 217, 222
BspLI	GGNNCC	2 cut(s)	114, 824
BspMAI	CTGCAG	1 cut(s)	862
BspT104I	TTCGAA	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	4 cut(s)	206, 220, 324, 731
BssMI	GATC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	916
BstACI	GRCGYC	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	129, 224
BstDEI	CTNAG	3 cut(s)	5, 657, 801
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	158, 451, 520, 607
BstFNI	CGCG	4 cut(s)	63, 87, 217, 222
BstHHI	GCGC	4 cut(s)	65, 89, 219, 886
BstKTI	GATC	1 cut(s)	721
BstMAI	GTCTC	2 cut(s)	78, 419
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 171, 223, 881, 940
BstNI	CCWGG	1 cut(s)	916
BstSCI	CCNGG	4 cut(s)	108, 306, 837, 914
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	4 cut(s)	63, 87, 217, 222
BstV1I	GCAGC	2 cut(s)	640, 711
Bsu36I	CCTNAGG	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	323, 439, 910
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	4 cut(s)	158, 451, 520, 607
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	129, 224
CfoI	GCGC	4 cut(s)	65, 89, 219, 886
Cfr10I	RCCGGY	1 cut(s)	439
Cfr42I	CCGCGG	1 cut(s)	223
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	835, 946
CviAII	CATG	2 cut(s)	494, 877
CviQI	GTAC	2 cut(s)	835, 946
DdeI	CTNAG	3 cut(s)	5, 657, 801
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	751
Eco81I	CCTNAGG	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	914
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	2 cut(s)	497, 880
FaiI	YATR	7 cut(s)	32, 200, 495, 645, 758, 777, 878
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	493, 876
FauI	CCCGC	4 cut(s)	33, 68, 152, 215
FokI	GGATG	4 cut(s)	145, 458, 527, 594
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	949
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	4 cut(s)	64, 88, 218, 885
HaeIII	GGCC	3 cut(s)	323, 439, 910
HapII	CCGG	8 cut(s)	110, 148, 277, 295, 308, 440, 826, 838
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	4 cut(s)	65, 89, 219, 886
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	497, 880
Hin6I	GCGC	4 cut(s)	63, 87, 217, 884
HinP1I	GCGC	4 cut(s)	63, 87, 217, 884
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	2 cut(s)	499, 850
HpaII	CCGG	8 cut(s)	110, 148, 277, 295, 308, 440, 826, 838
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	207, 478, 732, 855
Hpy188III	TCNNGA	3 cut(s)	96, 295, 487
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	3 cut(s)	374, 377, 478
HpyAV	CCTTC	8 cut(s)	20, 54, 334, 661, 670, 682, 778, 922
HpyCH4IV	ACGT	3 cut(s)	258, 281, 507
HpyCH4V	TGCA	2 cut(s)	860, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 171, 223, 881, 940
HpyF3I	CTNAG	3 cut(s)	5, 657, 801
HpySE526I	ACGT	3 cut(s)	258, 281, 507
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	497, 880
HspAI	GCGC	4 cut(s)	63, 87, 217, 884
Kpn2I	TCCGGA	1 cut(s)	294
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	718
LmnI	GCTCC	5 cut(s)	70, 112, 231, 679, 931
Lsp1109I	GCAGC	2 cut(s)	640, 711
LweI	GCATC	2 cut(s)	167, 436
MaeI	CTAG	1 cut(s)	949
MaeII	ACGT	3 cut(s)	258, 281, 507
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	5 cut(s)	201, 433, 559, 661, 866
MmeI	TCCRAC	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	294
MseI	TTAA	1 cut(s)	576
MspA1I	CMGCKG	2 cut(s)	165, 222
MspI	CCGG	8 cut(s)	110, 148, 277, 295, 308, 440, 826, 838
MspR9I	CCNGG	4 cut(s)	110, 308, 839, 916
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	916
MvnI	CGCG	4 cut(s)	63, 87, 217, 222
MwoI	GCNNNNNNNGC	5 cut(s)	133, 171, 223, 881, 940
NciI	CCSGG	3 cut(s)	110, 308, 839
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	2 cut(s)	497, 880
NlaIV	GGNNCC	2 cut(s)	114, 824
NsbI	TGCGCA	1 cut(s)	885
NspV	TTCGAA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	499, 850
PfoI	TCCNGGA	1 cut(s)	914
Ppu21I	YACGTR	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	914
PspN4I	GGNNCC	2 cut(s)	114, 824
PstI	CTGCAG	1 cut(s)	862
RsaI	GTAC	2 cut(s)	836, 947
RsaNI	GTAC	2 cut(s)	835, 946
SacII	CCGCGG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	576
Sau3AI	GATC	1 cut(s)	718
ScrFI	CCNGG	4 cut(s)	110, 308, 839, 916
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	167, 436
SfcI	CTRYAG	1 cut(s)	858
Sfr303I	CCGCGG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	502
SgrBI	CCGCGG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	5 cut(s)	201, 433, 559, 661, 866
SspMI	CTAG	1 cut(s)	949
StyD4I	CCNGG	4 cut(s)	108, 306, 837, 914
StyI	CCWWGG	1 cut(s)	324
TaiI	ACGT	3 cut(s)	261, 284, 510
TaqI	TCGA	4 cut(s)	95, 318, 486, 502
TasI	AATT	5 cut(s)	201, 433, 559, 661, 866
TauI	GCSGC	9 cut(s)	87, 177, 217, 222, 242, 245, 353, 356, 369
TfiI	GAWTC	2 cut(s)	499, 850
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	2 cut(s)	653, 724
TspDTI	ATGAA	4 cut(s)	353, 531, 596, 879
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	44
XspI	CTAG	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.