Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Reverse (-)

20598140 .. 20601373

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCTCTACTCTGTACCCGAGCTCCGATATCCCTTTCTTGCCGCGCCGTTTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACCGACCCAAGCCAAAACCCCGGCGCCGGAAAACCGCGGCCGGCGGAAATGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGGGGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGAAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAACTGCCGCCGTTGACGGCGGCGACGACGACGACGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGTTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATAGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAAGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCGAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCCTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCAGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCGTCCTGGATTGATGTGAAGGAGCTAACTCTACCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.69

Weight (kDa)

5.66

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	147
AccII	CGCG	4 cut(s)	87, 161, 225, 500
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	2 cut(s)	162, 440
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	2 cut(s)	148, 476
AfaI	GTAC	3 cut(s)	58, 839, 950
AfiI	CCNNNNNNNGG	3 cut(s)	150, 225, 723
AgsI	TTSAA	3 cut(s)	14, 679, 787
AjnI	CCWGG	1 cut(s)	917
AluBI	AGCT	6 cut(s)	65, 600, 659, 685, 695, 937
AluI	AGCT	6 cut(s)	65, 600, 659, 685, 695, 937
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	3 cut(s)	401, 422, 789
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	5 cut(s)	40, 162, 440, 774, 911
ApeKI	GCWGC	3 cut(s)	4, 656, 727
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	5 cut(s)	9, 89, 150, 225, 889
AspS9I	GGNCC	2 cut(s)	41, 124
AsuC2I	CCSGG	4 cut(s)	122, 145, 220, 311
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	147
BanII	GRGCYC	2 cut(s)	67, 117
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	668, 714
BceAI	ACGGC	7 cut(s)	55, 74, 344, 382, 426, 876, 898
BcgI	CGANNNNNNTGC	4 cut(s)	485, 519, 857, 891
BciT130I	CCWGG	1 cut(s)	919
BcnI	CCSGG	4 cut(s)	122, 145, 220, 311
BcoDI	GTCTC	3 cut(s)	401, 422, 789
BfoI	RGCGCY	1 cut(s)	151
Bme1390I	CCNGG	5 cut(s)	122, 145, 220, 311, 919
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	41, 124
BmiI	GGNNCC	2 cut(s)	114, 149
BmrFI	CCNGG	5 cut(s)	122, 145, 220, 311, 919
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	439, 703
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	4 cut(s)	122, 145, 220, 311
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	148, 476
BsaJI	CCNNGG	4 cut(s)	143, 159, 209, 734
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 225, 723
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	615
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	919
BseDI	CCNNGG	4 cut(s)	143, 159, 209, 734
BseGI	GGATG	4 cut(s)	454, 523, 610, 718
BseLI	CCNNNNNNNGG	3 cut(s)	150, 225, 723
BseMII	CTCAG	3 cut(s)	651, 809, 818
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	4 cut(s)	247, 419, 437, 440
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	668, 714
Bsh1236I	CGCG	4 cut(s)	87, 161, 225, 500
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	42, 164, 442, 776, 913
BshNI	GGYRCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	7 cut(s)	122, 145, 151, 165, 220, 280, 311
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	150, 225, 723
BsmAI	GTCTC	3 cut(s)	401, 422, 789
BsmBI	CGTCTC	2 cut(s)	401, 422
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	42, 164, 442, 776, 913
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	67, 117
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	2 cut(s)	721, 831
BspANI	GGCC	5 cut(s)	42, 164, 442, 776, 913
BspCNI	CTCAG	3 cut(s)	652, 810, 817
BspFNI	CGCG	4 cut(s)	87, 161, 225, 500
BspLI	GGNNCC	2 cut(s)	114, 149
BspPI	GGATC	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	143, 159, 209, 734
BssMI	GATC	2 cut(s)	721, 831
BssNI	GRCGYC	2 cut(s)	148, 476
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	2 cut(s)	800, 948
BstACI	GRCGYC	2 cut(s)	148, 476
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	166, 227, 498
BstDEI	CTNAG	3 cut(s)	660, 804, 818
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	454, 523, 610, 718
BstFNI	CGCG	4 cut(s)	87, 161, 225, 500
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	5 cut(s)	9, 89, 150, 225, 889
BstKTI	GATC	2 cut(s)	724, 834
BstMAI	GTCTC	3 cut(s)	401, 422, 789
BstMBI	GATC	2 cut(s)	721, 831
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstNI	CCWGG	1 cut(s)	919
BstSCI	CCNGG	5 cut(s)	120, 143, 218, 309, 917
BstUI	CGCG	4 cut(s)	87, 161, 225, 500
BstV1I	GCAGC	2 cut(s)	668, 714
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
BstZI	CGGCCG	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	5 cut(s)	42, 164, 442, 776, 913
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	454, 523, 610, 718
Cac8I	GCNNGC	3 cut(s)	166, 227, 498
CfoI	GCGC	5 cut(s)	9, 89, 150, 225, 889
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	41, 124
Cfr42I	CCGCGG	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	57, 838, 949
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	3 cut(s)	31, 754, 880
CviQI	GTAC	3 cut(s)	57, 838, 949
DdeI	CTNAG	3 cut(s)	660, 804, 818
DinI	GGCGCC	1 cut(s)	149
DpnI	GATC	2 cut(s)	723, 833
DpnII	GATC	2 cut(s)	721, 831
EaeI	YGGCCR	2 cut(s)	162, 440
EagI	CGGCCG	1 cut(s)	162
EciI	GGCGGA	3 cut(s)	183, 195, 244
Ecl136II	GAGCTC	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	67, 117
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	917
EcoRV	GATATC	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	67, 117
EgeI	GGCGCC	1 cut(s)	149
EheI	GGCGCC	1 cut(s)	149
Esp3I	CGTCTC	2 cut(s)	401, 422
FaeI	CATG	3 cut(s)	34, 757, 883
FaiI	YATR	6 cut(s)	32, 626, 648, 755, 780, 881
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	30, 753, 879
FauI	CCCGC	1 cut(s)	218
FokI	GGATG	4 cut(s)	461, 530, 597, 725
FriOI	GRGCYC	2 cut(s)	67, 117
FspI	TGCGCA	1 cut(s)	888
GlaI	GCGC	5 cut(s)	8, 88, 149, 224, 888
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	42, 164, 442, 776, 913
HapII	CCGG	7 cut(s)	122, 145, 151, 165, 220, 280, 311
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	5 cut(s)	9, 89, 150, 225, 889
Hin1I	GRCGYC	2 cut(s)	148, 476
Hin1II	CATG	3 cut(s)	34, 757, 883
Hin6I	GCGC	5 cut(s)	7, 87, 148, 223, 887
HinP1I	GCGC	5 cut(s)	7, 87, 148, 223, 887
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	107, 205, 502, 853
HpaII	CCGG	7 cut(s)	122, 145, 151, 165, 220, 280, 311
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	9 cut(s)	69, 106, 112, 210, 481, 507, 735, 819, 858
Hpy188III	TCNNGA	5 cut(s)	96, 202, 298, 322, 640
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	6 cut(s)	377, 380, 383, 386, 389, 481
HpyCH4III	ACNGT	2 cut(s)	800, 948
HpyCH4IV	ACGT	3 cut(s)	261, 284, 510
HpyCH4V	TGCA	2 cut(s)	37, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	3 cut(s)	660, 804, 818
HpySE526I	ACGT	3 cut(s)	261, 284, 510
Hsp92I	GRCGYC	2 cut(s)	148, 476
Hsp92II	CATG	3 cut(s)	34, 757, 883
HspAI	GCGC	5 cut(s)	7, 87, 148, 223, 887
KasI	GGCGCC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	721, 831
LmnI	GCTCC	5 cut(s)	70, 112, 234, 682, 934
Lsp1109I	GCAGC	2 cut(s)	668, 714
LweI	GCATC	2 cut(s)	439, 703
MaeII	ACGT	3 cut(s)	261, 284, 510
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	723, 833
MboI	GATC	2 cut(s)	721, 831
MboII	GAAGA	3 cut(s)	226, 337, 757
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	2 cut(s)	67, 117
MluCI	AATT	7 cut(s)	15, 335, 436, 562, 580, 664, 869
Mly113I	GGCGCC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	459
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	288, 579
MspA1I	CMGCKG	3 cut(s)	161, 445, 659
MspI	CCGG	7 cut(s)	122, 145, 151, 165, 220, 280, 311
MspR9I	CCNGG	5 cut(s)	122, 145, 220, 311, 919
MvaI	CCWGG	1 cut(s)	919
MvnI	CGCG	4 cut(s)	87, 161, 225, 500
MwoI	GCNNNNNNNGC	1 cut(s)	884
NaeI	GCCGGC	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	148
NciI	CCSGG	4 cut(s)	122, 145, 220, 311
NdeII	GATC	2 cut(s)	721, 831
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	34, 757, 883
NlaIV	GGNNCC	2 cut(s)	114, 149
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	3 cut(s)	372, 381, 384
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	107, 205, 502, 853
PfoI	TCCNGGA	1 cut(s)	917
PluTI	GGCGCC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	917
PspN4I	GGNNCC	2 cut(s)	114, 149
PspPI	GGNCC	2 cut(s)	41, 124
PsuI	RGATCY	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	58, 839, 950
RsaNI	GTAC	3 cut(s)	57, 838, 949
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	288, 579
Sau3AI	GATC	2 cut(s)	721, 831
Sau96I	GGNCC	2 cut(s)	41, 124
ScrFI	CCNGG	5 cut(s)	122, 145, 220, 311, 919
SduI	GDGCHC	2 cut(s)	67, 117
SfaNI	GCATC	2 cut(s)	439, 703
SfoI	GGCGCC	1 cut(s)	149
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	7 cut(s)	15, 335, 436, 562, 580, 664, 869
SspDI	GGCGCC	1 cut(s)	147
SspI	AATATT	1 cut(s)	760
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	5 cut(s)	120, 143, 218, 309, 917
TaaI	ACNGT	2 cut(s)	800, 948
TaiI	ACGT	3 cut(s)	264, 287, 513
TaqI	TCGA	3 cut(s)	95, 321, 639
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	15, 335, 436, 562, 580, 664, 869
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	7 cut(s)	87, 164, 245, 248, 359, 372, 445
TfiI	GAWTC	4 cut(s)	107, 205, 502, 853
Tru1I	TTAA	2 cut(s)	288, 579
Tru9I	TTAA	2 cut(s)	288, 579
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	4, 656, 727
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	189, 356, 534, 599, 770
TspGWI	ACGGA	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.