Rh6DG296000

chloroplast organization

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
49696744 .. 49699738
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG296000.1

Sequence Viewer

Length: 1197 bp
ATGTATGCACAATTTCCTCATAAATTATTCTCTGTCAATAATCGATATTCAAGCTATGCAATTGATCATAAACACCTGGTGTGCTCACTCAGACTGATTCGAAAGCCACCACAAAAAATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCCCTACTCTGTACCCGCGCTCCGTTATCCCTTTCTTGCCTCGCCGTGTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACCGAGCCAAGCCGAAACCCCGTCGCCGGAAAACCGCGGCCGGCGGAAACGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTTCCGCCGTTGACGACGGCGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCCAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCCTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCGGACGAATTGTGGCATTCTGACTGCGGATTATGTTCTCGTGAGACCGTTGTATTTGCAGTGCAAAACTGGGTATGTGGATCATCCGGTGATGAGCAACCTGTATGTGTAGCATCATGGGACTGTACTAATGATCAAGAGTGCAACGAGGTGTGCAAGAACAAGTATAAGGTTTGTGGAACCTGCATTCTCGAGGCACATAACAAAGCTAGTTTGCCTGTGCGTCTATGA

Protein Analysis

398

Amino Acids

45.78

Weight (kDa)

6.21

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1157
AccII CGCG 4 cut(s) 180, 278, 342, 605
AclWI GGATC 2 cut(s) 944, 1054
AcoI YGGCCR 2 cut(s) 279, 545
AcsI RAATTY 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 3 cut(s) 175, 944, 1093
AfiI CCNNNNNNNGG 3 cut(s) 267, 342, 828
AgsI TTSAA 4 cut(s) 51, 131, 784, 892
AjnI CCWGG 3 cut(s) 75, 414, 839
AluBI AGCT 6 cut(s) 54, 470, 705, 764, 790, 1175
AluI AGCT 6 cut(s) 54, 470, 705, 764, 790, 1175
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 4 cut(s) 506, 527, 894, 1004
AlwI GGATC 2 cut(s) 944, 1054
Ama87I CYCGRG 1 cut(s) 1157
AoxI GGCC 4 cut(s) 157, 279, 545, 879
ApeKI GCWGC 3 cut(s) 121, 761, 832
ApoI RAATTY 1 cut(s) 132
AseI ATTAAT 1 cut(s) 684
AspLEI GCGC 3 cut(s) 126, 182, 342
AspS9I GGNCC 2 cut(s) 158, 241
AsuC2I CCSGG 3 cut(s) 239, 337, 428
AsuHPI GGTGA 2 cut(s) 131, 1067
AsuII TTCGAA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 909
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 1 cut(s) 1005
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 108, 773, 819
BceAI ACGGC 6 cut(s) 172, 191, 461, 502, 531, 981
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 3 cut(s) 77, 416, 841
BclI TGATCA 2 cut(s) 64, 1099
BcnI CCSGG 3 cut(s) 239, 337, 428
BcoDI GTCTC 4 cut(s) 506, 527, 894, 1004
BfaI CTAG 1 cut(s) 1176
BfuAI ACCTGC 1 cut(s) 1157
BisI GCNGC 7 cut(s) 122, 279, 360, 363, 548, 762, 833
BlsI GCNGC 7 cut(s) 123, 280, 361, 364, 549, 763, 834
Bme1390I CCNGG 6 cut(s) 77, 239, 337, 416, 428, 841
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 1157
BmgT120I GGNCC 2 cut(s) 158, 241
BmiI GGNNCC 2 cut(s) 231, 1147
BmrFI CCNGG 6 cut(s) 77, 239, 337, 416, 428, 841
BmrI ACTGGG 2 cut(s) 714, 1045
BmsI GCATC 3 cut(s) 544, 808, 1088
BmuI ACTGGG 2 cut(s) 714, 1045
BpiI GAAGAC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 3 cut(s) 239, 337, 428
Bsa29I ATCGAT 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 1004
BsaJI CCNNGG 3 cut(s) 276, 326, 839
BsaWI WCCGGW 2 cut(s) 396, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 342, 828
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 720, 1040
Bse21I CCTNAGG 1 cut(s) 909
BseBI CCWGG 3 cut(s) 77, 416, 841
BseCI ATCGAT 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 276, 326, 839
BseGI GGATG 5 cut(s) 559, 628, 715, 823, 1049
BseLI CCNNNNNNNGG 3 cut(s) 267, 342, 828
BseMII CTCAG 4 cut(s) 103, 756, 914, 923
BseNI ACTGG 2 cut(s) 720, 1040
BseRI GAGGAG 4 cut(s) 364, 524, 542, 545
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 108, 773, 819
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 4 cut(s) 180, 278, 342, 605
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 4 cut(s) 159, 281, 547, 881
BshVI ATCGAT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 1157
BsiSI CCGG 7 cut(s) 239, 268, 282, 337, 397, 428, 1053
BslFI GGGAC 2 cut(s) 398, 1100
BslI CCNNNNNNNGG 3 cut(s) 267, 342, 828
BsmAI GTCTC 4 cut(s) 506, 527, 894, 1004
BsmBI CGTCTC 2 cut(s) 506, 527
BsmFI GGGAC 2 cut(s) 398, 1100
BsmI GAATGC 2 cut(s) 982, 1152
BsnI GGCC 4 cut(s) 159, 281, 547, 881
Bso31I GGTCTC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 1157
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 86, 234
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 5 cut(s) 64, 826, 936, 1046, 1099
BspANI GGCC 4 cut(s) 159, 281, 547, 881
BspCNI CTCAG 4 cut(s) 102, 757, 915, 922
BspDI ATCGAT 1 cut(s) 43
BspFNI CGCG 4 cut(s) 180, 278, 342, 605
BspLI GGNNCC 2 cut(s) 231, 1147
BspMI ACCTGC 1 cut(s) 1157
BspPI GGATC 2 cut(s) 944, 1054
BspT104I TTCGAA 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 2 cut(s) 720, 1040
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 276, 326, 839
BssMI GATC 5 cut(s) 64, 826, 936, 1046, 1099
BssNI GRCGYC 1 cut(s) 581
BssSI CACGAG 1 cut(s) 1005
Bst2BI CACGAG 1 cut(s) 1005
Bst2UI CCWGG 3 cut(s) 77, 416, 841
Bst4CI ACNGT 3 cut(s) 905, 1015, 1091
BstACI GRCGYC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 283, 344, 603
BstDEI CTNAG 4 cut(s) 89, 765, 909, 923
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 5 cut(s) 559, 628, 715, 823, 1049
BstFNI CGCG 4 cut(s) 180, 278, 342, 605
BstHHI GCGC 3 cut(s) 126, 182, 342
BstKTI GATC 5 cut(s) 67, 829, 939, 1049, 1102
BstMAI GTCTC 4 cut(s) 506, 527, 894, 1004
BstMBI GATC 5 cut(s) 64, 826, 936, 1046, 1099
BstMCI CGRYCG 1 cut(s) 282
BstNI CCWGG 3 cut(s) 77, 416, 841
BstSCI CCNGG 6 cut(s) 75, 237, 335, 414, 426, 839
BstUI CGCG 4 cut(s) 180, 278, 342, 605
BstV1I GCAGC 3 cut(s) 108, 773, 819
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 936
BstYI RGATCY 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 909
BsuRI GGCC 4 cut(s) 159, 281, 547, 881
BsuTUI ATCGAT 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 5 cut(s) 559, 628, 715, 823, 1049
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 1 cut(s) 1032
BveI ACCTGC 1 cut(s) 1157
Cac8I GCNNGC 3 cut(s) 283, 344, 603
CfoI GCGC 3 cut(s) 126, 182, 342
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 158, 241
Cfr42I CCGCGG 1 cut(s) 279
ClaI ATCGAT 1 cut(s) 43
CpoI CGGWCCG 1 cut(s) 241
CseI GACGC 2 cut(s) 570, 1178
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 3 cut(s) 174, 943, 1092
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 3 cut(s) 148, 859, 1083
CviQI GTAC 3 cut(s) 174, 943, 1092
DdeI CTNAG 4 cut(s) 89, 765, 909, 923
DpnI GATC 5 cut(s) 66, 828, 938, 1048, 1101
DpnII GATC 5 cut(s) 64, 826, 936, 1046, 1099
DraIII CACNNNGTG 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 279, 545
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 5 cut(s) 300, 312, 361, 463, 983
EclXI CGGCCG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 1004
Eco47I GGWCC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 1157
EcoRII CCWGG 3 cut(s) 75, 414, 839
EcoT38I GRGCYC 1 cut(s) 234
Esp3I CGTCTC 2 cut(s) 506, 527
FaeI CATG 3 cut(s) 151, 862, 1086
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 2 cut(s) 398, 1100
FatI CATG 3 cut(s) 147, 858, 1082
FauI CCCGC 2 cut(s) 185, 335
FbaI TGATCA 2 cut(s) 64, 1099
Fnu4HI GCNGC 7 cut(s) 122, 279, 360, 363, 548, 762, 833
FokI GGATG 5 cut(s) 566, 635, 702, 830, 1036
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 7 cut(s) 122, 279, 360, 363, 548, 762, 833
FspBI CTAG 1 cut(s) 1176
GlaI GCGC 3 cut(s) 125, 181, 341
GluI GCNGC 7 cut(s) 122, 279, 360, 363, 548, 762, 833
HaeIII GGCC 4 cut(s) 159, 281, 547, 881
HapII CCGG 7 cut(s) 239, 268, 282, 337, 397, 428, 1053
HgaI GACGC 2 cut(s) 570, 1178
HhaI GCGC 3 cut(s) 126, 182, 342
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 3 cut(s) 151, 862, 1086
Hin6I GCGC 3 cut(s) 124, 180, 340
HinP1I GCGC 3 cut(s) 124, 180, 340
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 2 cut(s) 468, 703
HinfI GANTC 5 cut(s) 97, 224, 322, 607, 958
HpaII CCGG 7 cut(s) 239, 268, 282, 337, 397, 428, 1053
HphI GGTGA 2 cut(s) 131, 1067
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 9 cut(s) 92, 223, 229, 327, 586, 612, 924, 963, 988
Hpy188III TCNNGA 7 cut(s) 213, 319, 439, 745, 1007, 1103, 1157
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 4 cut(s) 267, 488, 494, 586
HpyCH4III ACNGT 3 cut(s) 905, 1015, 1091
HpyCH4IV ACGT 3 cut(s) 378, 401, 615
HpyCH4V TGCA 9 cut(s) 8, 59, 154, 370, 1025, 1030, 1110, 1122, 1152
HpyF3I CTNAG 4 cut(s) 89, 765, 909, 923
HpySE526I ACGT 3 cut(s) 378, 401, 615
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 3 cut(s) 151, 862, 1086
HspAI GCGC 3 cut(s) 124, 180, 340
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 64, 1099
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 5 cut(s) 64, 826, 936, 1046, 1099
LmnI GCTCC 5 cut(s) 187, 229, 351, 418, 787
Lsp1109I GCAGC 3 cut(s) 108, 773, 819
LweI GCATC 3 cut(s) 544, 808, 1088
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 1 cut(s) 1176
MaeII ACGT 3 cut(s) 378, 401, 615
MaeIII GTNAC 1 cut(s) 137
MalI GATC 5 cut(s) 66, 828, 938, 1048, 1101
MboI GATC 5 cut(s) 64, 826, 936, 1046, 1099
MboII GAAGA 3 cut(s) 343, 454, 862
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 2 cut(s) 86, 234
MmeI TCCRAC 1 cut(s) 564
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 2 cut(s) 405, 684
MspA1I CMGCKG 3 cut(s) 278, 550, 764
MspI CCGG 7 cut(s) 239, 268, 282, 337, 397, 428, 1053
MspR9I CCNGG 6 cut(s) 77, 239, 337, 416, 428, 841
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 2 cut(s) 982, 1152
MvaI CCWGG 3 cut(s) 77, 416, 841
MvnI CGCG 4 cut(s) 180, 278, 342, 605
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 3 cut(s) 239, 337, 428
NdeII GATC 5 cut(s) 64, 826, 936, 1046, 1099
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 3 cut(s) 151, 862, 1086
NlaIV GGNNCC 2 cut(s) 231, 1147
NmuCI GTSAC 1 cut(s) 137
NspV TTCGAA 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 1157
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 2 cut(s) 982, 1152
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 5 cut(s) 97, 224, 322, 607, 958
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 7 cut(s) 123, 280, 361, 364, 549, 763, 834
Ppu21I YACGTR 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 75, 414, 839
PspGI CCWGG 3 cut(s) 75, 414, 839
PspN4I GGNNCC 2 cut(s) 231, 1147
PspPI GGNCC 2 cut(s) 158, 241
PsuI RGATCY 1 cut(s) 936
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 3 cut(s) 175, 944, 1093
RsaNI GTAC 3 cut(s) 174, 943, 1092
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SacII CCGCGG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 405, 684
SatI GCNGC 7 cut(s) 122, 279, 360, 363, 548, 762, 833
Sau3AI GATC 5 cut(s) 64, 826, 936, 1046, 1099
Sau96I GGNCC 2 cut(s) 158, 241
ScrFI CCNGG 6 cut(s) 77, 239, 337, 416, 428, 841
SduI GDGCHC 2 cut(s) 86, 234
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 3 cut(s) 544, 808, 1088
Sfr274I CTCGAG 1 cut(s) 1157
Sfr303I CCGCGG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 279
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 1157
SmlI CTYRAG 2 cut(s) 791, 1157
SmoI CTYRAG 2 cut(s) 791, 1157
SspI AATATT 1 cut(s) 865
SspMI CTAG 1 cut(s) 1176
StyD4I CCNGG 6 cut(s) 75, 237, 335, 414, 426, 839
TaaI ACNGT 3 cut(s) 905, 1015, 1091
TaiI ACGT 3 cut(s) 381, 404, 618
TaqI TCGA 6 cut(s) 43, 100, 212, 438, 744, 1158
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 2 cut(s) 942, 1091
TauI GCSGC 4 cut(s) 281, 362, 365, 550
TfiI GAWTC 5 cut(s) 97, 224, 322, 607, 958
Tru1I TTAA 2 cut(s) 405, 684
Tru9I TTAA 2 cut(s) 405, 684
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 121, 761, 832
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 473, 639, 704, 875
TspGWI ACGGA 2 cut(s) 174, 551
TspRI CASTG 1 cut(s) 1032
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 1157
XspI CTAG 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.