Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007029.1

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Reverse (-)

132428 .. 133545

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007029.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgttgcacggcccttctctactctgtacccgcgctccgatatccctttcttgccgcgccgtgtcgagaaagtccgactcggagcccgacccggaccgagccaagccaaaaccccgtcgccggaaaaccgcggccggcggaaatgaaggcggagaaaaagaccagcctttcacgattccgaggaagacccggcgcgggcggaggagcgaggcggcggcggtgcaggattacgtgagggacacactcaaccggacgtttaagacaatccaggagcagaacccggagattttcgagaagaagggagaattgatgaaggagaaagctgccgccgttgacggcggctacgaggaggaggaggaggaggaggggagtgagagagaggagacggcggtggtggaggaggagacggagaattggccgctggatgcggaggtggggtgggggattagggcgtcggagtattttgagaagcacgcgattcggaacgtggtggatgaaaatggggttgagattgattgggaaggagaggttgaggataattgggtcaaggagattaattgcttggagtgggaaagctttgcttttcatcccagtccgcttattgtctttgttttcgagaggtataacagagcagctgagaattggaaggctttgaaggagcttgagaaggctgtcaaggtgtattgggatgccaaagatcggctgcctcccaggtctgtgaagatagacatgaatattgagagggatttggcctatgctttgaaggttagagactgtcctcaggttttgtttctgagagggaacaggatcatgtacagagagaaagagattcggacggcggacgaattggttgccatgattgcgcatttctactacaatgcaaagaggccgtcctggattgatgtgaaggagctaactctgccatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.9

Weight (kDa)

5.27

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	864
AccII	CGCG	5 cut(s)	33, 57, 131, 195, 476
AclWI	GGATC	1 cut(s)	815
AcoI	YGGCCR	2 cut(s)	132, 416
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	2 cut(s)	28, 815
AfiI	CCNNNNNNNGG	3 cut(s)	120, 195, 699
AgsI	TTSAA	2 cut(s)	655, 763
AjnI	CCWGG	3 cut(s)	267, 710, 893
AluBI	AGCT	5 cut(s)	323, 576, 635, 661, 913
AluI	AGCT	5 cut(s)	323, 576, 635, 661, 913
Alw26I	GTCTC	3 cut(s)	377, 398, 765
AlwI	GGATC	1 cut(s)	815
AoxI	GGCC	5 cut(s)	10, 132, 416, 750, 887
ApeKI	GCWGC	3 cut(s)	323, 632, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
AseI	ATTAAT	1 cut(s)	555
AspLEI	GCGC	4 cut(s)	35, 59, 195, 865
AspS9I	GGNCC	2 cut(s)	11, 94
AsuC2I	CCSGG	3 cut(s)	92, 190, 281
AvaII	GGWCC	1 cut(s)	94
AxyI	CCTNAGG	1 cut(s)	780
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	310, 644, 690
BceAI	ACGGC	7 cut(s)	25, 44, 314, 352, 402, 852, 874
BcgI	CGANNNNNNTGC	4 cut(s)	461, 495, 833, 867
BciT130I	CCWGG	3 cut(s)	269, 712, 895
BcnI	CCSGG	3 cut(s)	92, 190, 281
BcoDI	GTCTC	3 cut(s)	377, 398, 765
BfaI	CTAG	1 cut(s)	928
Bme1390I	CCNGG	6 cut(s)	92, 190, 269, 281, 712, 895
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	11, 94
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	6 cut(s)	92, 190, 269, 281, 712, 895
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	415, 679
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	3 cut(s)	92, 190, 281
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	129, 179, 710
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 195, 699
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	591
Bse21I	CCTNAGG	1 cut(s)	780
BseBI	CCWGG	3 cut(s)	269, 712, 895
BseDI	CCNNGG	3 cut(s)	129, 179, 710
BseGI	GGATG	4 cut(s)	430, 499, 586, 694
BseLI	CCNNNNNNNGG	3 cut(s)	120, 195, 699
BseMII	CTCAG	3 cut(s)	627, 785, 794
BseNI	ACTGG	1 cut(s)	591
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	310, 644, 690
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	5 cut(s)	33, 57, 131, 195, 476
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	12, 134, 418, 752, 889
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	6 cut(s)	92, 121, 135, 190, 250, 281
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	120, 195, 699
BsmAI	GTCTC	3 cut(s)	377, 398, 765
BsmBI	CGTCTC	2 cut(s)	377, 398
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	12, 134, 418, 752, 889
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	2 cut(s)	697, 807
BspANI	GGCC	5 cut(s)	12, 134, 418, 752, 889
BspCNI	CTCAG	3 cut(s)	628, 786, 793
BspFNI	CGCG	5 cut(s)	33, 57, 131, 195, 476
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	815
BsrFI	RCCGGY	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	129, 179, 710
BssMI	GATC	2 cut(s)	697, 807
BssNI	GRCGYC	1 cut(s)	452
Bst2UI	CCWGG	3 cut(s)	269, 712, 895
Bst4CI	ACNGT	1 cut(s)	776
BstACI	GRCGYC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	813
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	136, 197, 474
BstDEI	CTNAG	3 cut(s)	636, 780, 794
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	430, 499, 586, 694
BstFNI	CGCG	5 cut(s)	33, 57, 131, 195, 476
BstHHI	GCGC	4 cut(s)	35, 59, 195, 865
BstKTI	GATC	2 cut(s)	700, 810
BstMAI	GTCTC	3 cut(s)	377, 398, 765
BstMBI	GATC	2 cut(s)	697, 807
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	860, 919
BstNI	CCWGG	3 cut(s)	269, 712, 895
BstSCI	CCNGG	6 cut(s)	90, 188, 267, 279, 710, 893
BstUI	CGCG	5 cut(s)	33, 57, 131, 195, 476
BstV1I	GCAGC	3 cut(s)	310, 644, 690
BstV2I	GAAGAC	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	5 cut(s)	12, 134, 418, 752, 889
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	430, 499, 586, 694
Cac8I	GCNNGC	3 cut(s)	136, 197, 474
CfoI	GCGC	4 cut(s)	35, 59, 195, 865
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	11, 94
Cfr42I	CCGCGG	1 cut(s)	132
CpoI	CGGWCCG	1 cut(s)	94
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	27, 814
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	3 cut(s)	730, 811, 856
CviQI	GTAC	2 cut(s)	27, 814
DdeI	CTNAG	3 cut(s)	636, 780, 794
DpnI	GATC	2 cut(s)	699, 809
DpnII	GATC	2 cut(s)	697, 807
EaeI	YGGCCR	2 cut(s)	132, 416
EagI	CGGCCG	1 cut(s)	132
EciI	GGCGGA	4 cut(s)	153, 165, 214, 854
EclXI	CGGCCG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	780
EcoRII	CCWGG	3 cut(s)	267, 710, 893
EcoRV	GATATC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	2 cut(s)	377, 398
FaeI	CATG	3 cut(s)	733, 814, 859
FaiI	YATR	6 cut(s)	624, 731, 756, 812, 857, 925
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	729, 810, 855
FauI	CCCGC	2 cut(s)	38, 188
FokI	GGATG	4 cut(s)	437, 506, 573, 701
FriOI	GRGCYC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	928
FspI	TGCGCA	1 cut(s)	864
GlaI	GCGC	4 cut(s)	34, 58, 194, 864
HaeIII	GGCC	5 cut(s)	12, 134, 418, 752, 889
HapII	CCGG	6 cut(s)	92, 121, 135, 190, 250, 281
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	4 cut(s)	35, 59, 195, 865
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	733, 814, 859
Hin6I	GCGC	4 cut(s)	33, 57, 193, 863
HinP1I	GCGC	4 cut(s)	33, 57, 193, 863
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	4 cut(s)	77, 175, 478, 829
HpaII	CCGG	6 cut(s)	92, 121, 135, 190, 250, 281
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	8 cut(s)	39, 76, 82, 180, 457, 483, 795, 834
Hpy188III	TCNNGA	4 cut(s)	66, 172, 292, 616
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	120, 457
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	3 cut(s)	231, 254, 486
HpyCH4V	TGCA	3 cut(s)	7, 223, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	860, 919
HpyF3I	CTNAG	3 cut(s)	636, 780, 794
HpySE526I	ACGT	3 cut(s)	231, 254, 486
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	733, 814, 859
HspAI	GCGC	4 cut(s)	33, 57, 193, 863
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	697, 807
LmnI	GCTCC	6 cut(s)	40, 82, 204, 271, 658, 910
Lsp1109I	GCAGC	3 cut(s)	310, 644, 690
LweI	GCATC	2 cut(s)	415, 679
MaeI	CTAG	1 cut(s)	928
MaeII	ACGT	3 cut(s)	231, 254, 486
MalI	GATC	2 cut(s)	699, 809
MboI	GATC	2 cut(s)	697, 807
MboII	GAAGA	3 cut(s)	196, 307, 733
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	6 cut(s)	305, 412, 538, 556, 640, 845
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	99, 435
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	2 cut(s)	258, 555
MspA1I	CMGCKG	3 cut(s)	131, 421, 635
MspI	CCGG	6 cut(s)	92, 121, 135, 190, 250, 281
MspR9I	CCNGG	6 cut(s)	92, 190, 269, 281, 712, 895
MvaI	CCWGG	3 cut(s)	269, 712, 895
MvnI	CGCG	5 cut(s)	33, 57, 131, 195, 476
MwoI	GCNNNNNNNGC	2 cut(s)	860, 919
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	3 cut(s)	92, 190, 281
NdeII	GATC	2 cut(s)	697, 807
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	733, 814, 859
NlaIV	GGNNCC	1 cut(s)	84
NsbI	TGCGCA	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	175, 478, 829
PfoI	TCCNGGA	2 cut(s)	267, 893
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	232
PshBI	ATTAAT	1 cut(s)	555
Psp6I	CCWGG	3 cut(s)	267, 710, 893
PspGI	CCWGG	3 cut(s)	267, 710, 893
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	11, 94
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	28, 815
RsaNI	GTAC	2 cut(s)	27, 814
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	258, 555
Sau3AI	GATC	2 cut(s)	697, 807
Sau96I	GGNCC	2 cut(s)	11, 94
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	6 cut(s)	92, 190, 269, 281, 712, 895
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	415, 679
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	6 cut(s)	305, 412, 538, 556, 640, 845
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	1 cut(s)	928
StyD4I	CCNGG	6 cut(s)	90, 188, 267, 279, 710, 893
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	3 cut(s)	234, 257, 489
TaqI	TCGA	3 cut(s)	65, 291, 615
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	305, 412, 538, 556, 640, 845
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	7 cut(s)	57, 134, 215, 218, 329, 342, 421
TfiI	GAWTC	3 cut(s)	175, 478, 829
Tru1I	TTAA	2 cut(s)	258, 555
Tru9I	TTAA	2 cut(s)	258, 555
TseI	GCWGC	3 cut(s)	323, 632, 703
TspDTI	ATGAA	5 cut(s)	159, 326, 510, 575, 746
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	555
XspI	CTAG	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.