Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

50703527 .. 50706744

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCCCTACTCTGTACCCGCGCTCCGTTATCCCTTTCTTGCCTCGCCGTGTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACCGAGCCAAGCCGAAACCCCGTCGCCGGAAAACCGCGGCCGGCGGAAACGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTTCCGCCGTTGACGACGGCGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCCAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCCTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCGGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCGTCCTGGATTGATGTGAAGGAGCTAACTCTGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

36.28

Weight (kDa)

5.66

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	876
AccII	CGCG	4 cut(s)	63, 161, 225, 488
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	2 cut(s)	162, 428
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	58, 827
AfiI	CCNNNNNNNGG	3 cut(s)	150, 225, 711
AgsI	TTSAA	3 cut(s)	14, 667, 775
AjnI	CCWGG	3 cut(s)	297, 722, 905
AluBI	AGCT	5 cut(s)	353, 588, 647, 673, 925
AluI	AGCT	5 cut(s)	353, 588, 647, 673, 925
Alw26I	GTCTC	3 cut(s)	389, 410, 777
AlwI	GGATC	1 cut(s)	827
AoxI	GGCC	5 cut(s)	40, 162, 428, 762, 899
ApeKI	GCWGC	3 cut(s)	4, 644, 715
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	4 cut(s)	9, 65, 225, 877
AspS9I	GGNCC	2 cut(s)	41, 124
AsuC2I	CCSGG	3 cut(s)	122, 220, 311
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	656, 702
BceAI	ACGGC	7 cut(s)	55, 74, 344, 385, 414, 864, 886
BcgI	CGANNNNNNTGC	4 cut(s)	473, 507, 845, 879
BciT130I	CCWGG	3 cut(s)	299, 724, 907
BcnI	CCSGG	3 cut(s)	122, 220, 311
BcoDI	GTCTC	3 cut(s)	389, 410, 777
BfaI	CTAG	1 cut(s)	940
BisI	GCNGC	7 cut(s)	5, 162, 243, 246, 431, 645, 716
BlsI	GCNGC	7 cut(s)	6, 163, 244, 247, 432, 646, 717
Bme1390I	CCNGG	6 cut(s)	122, 220, 299, 311, 724, 907
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	41, 124
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 724, 907
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	427, 691
BmuI	ACTGGG	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	3 cut(s)	122, 220, 311
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	159, 209, 722
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 225, 711
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	603
Bse21I	CCTNAGG	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	299, 724, 907
BseDI	CCNNGG	3 cut(s)	159, 209, 722
BseGI	GGATG	4 cut(s)	442, 511, 598, 706
BseLI	CCNNNNNNNGG	3 cut(s)	150, 225, 711
BseMII	CTCAG	3 cut(s)	639, 797, 806
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	4 cut(s)	247, 407, 425, 428
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	656, 702
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	4 cut(s)	63, 161, 225, 488
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	42, 164, 430, 764, 901
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	150, 225, 711
BsmAI	GTCTC	3 cut(s)	389, 410, 777
BsmBI	CGTCTC	2 cut(s)	389, 410
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	42, 164, 430, 764, 901
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	709, 819
BspANI	GGCC	5 cut(s)	42, 164, 430, 764, 901
BspCNI	CTCAG	3 cut(s)	640, 798, 805
BspFNI	CGCG	4 cut(s)	63, 161, 225, 488
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	159, 209, 722
BssMI	GATC	2 cut(s)	709, 819
BssNI	GRCGYC	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	299, 724, 907
Bst4CI	ACNGT	1 cut(s)	788
BstACI	GRCGYC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	825
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	166, 227, 486
BstDEI	CTNAG	3 cut(s)	648, 792, 806
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	442, 511, 598, 706
BstFNI	CGCG	4 cut(s)	63, 161, 225, 488
BstHHI	GCGC	4 cut(s)	9, 65, 225, 877
BstKTI	GATC	2 cut(s)	712, 822
BstMAI	GTCTC	3 cut(s)	389, 410, 777
BstMBI	GATC	2 cut(s)	709, 819
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	872, 931
BstNI	CCWGG	3 cut(s)	299, 724, 907
BstSCI	CCNGG	6 cut(s)	120, 218, 297, 309, 722, 905
BstUI	CGCG	4 cut(s)	63, 161, 225, 488
BstV1I	GCAGC	2 cut(s)	656, 702
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
BstZI	CGGCCG	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	5 cut(s)	42, 164, 430, 764, 901
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	442, 511, 598, 706
Cac8I	GCNNGC	3 cut(s)	166, 227, 486
CfoI	GCGC	4 cut(s)	9, 65, 225, 877
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	41, 124
Cfr42I	CCGCGG	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	57, 826
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	3 cut(s)	31, 742, 868
CviQI	GTAC	2 cut(s)	57, 826
DdeI	CTNAG	3 cut(s)	648, 792, 806
DpnI	GATC	2 cut(s)	711, 821
DpnII	GATC	2 cut(s)	709, 819
EaeI	YGGCCR	2 cut(s)	162, 428
EagI	CGGCCG	1 cut(s)	162
EciI	GGCGGA	5 cut(s)	183, 195, 244, 346, 866
EclXI	CGGCCG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	792
EcoRII	CCWGG	3 cut(s)	297, 722, 905
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	2 cut(s)	389, 410
FaeI	CATG	3 cut(s)	34, 745, 871
FaiI	YATR	6 cut(s)	32, 636, 743, 768, 869, 937
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	30, 741, 867
FauI	CCCGC	2 cut(s)	68, 218
Fnu4HI	GCNGC	7 cut(s)	5, 162, 243, 246, 431, 645, 716
FokI	GGATG	4 cut(s)	449, 518, 585, 713
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	7 cut(s)	5, 162, 243, 246, 431, 645, 716
FspBI	CTAG	1 cut(s)	940
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	4 cut(s)	8, 64, 224, 876
GluI	GCNGC	7 cut(s)	5, 162, 243, 246, 431, 645, 716
HaeIII	GGCC	5 cut(s)	42, 164, 430, 764, 901
HapII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	4 cut(s)	9, 65, 225, 877
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	34, 745, 871
Hin6I	GCGC	4 cut(s)	7, 63, 223, 875
HinP1I	GCGC	4 cut(s)	7, 63, 223, 875
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	351, 586
HinfI	GANTC	4 cut(s)	107, 205, 490, 841
HpaII	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	7 cut(s)	106, 112, 210, 469, 495, 807, 846
Hpy188III	TCNNGA	4 cut(s)	96, 202, 322, 628
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	4 cut(s)	150, 371, 377, 469
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	3 cut(s)	261, 284, 498
HpyCH4V	TGCA	3 cut(s)	37, 253, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	872, 931
HpyF3I	CTNAG	3 cut(s)	648, 792, 806
HpySE526I	ACGT	3 cut(s)	261, 284, 498
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	34, 745, 871
HspAI	GCGC	4 cut(s)	7, 63, 223, 875
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	709, 819
LmnI	GCTCC	6 cut(s)	70, 112, 234, 301, 670, 922
Lsp1109I	GCAGC	2 cut(s)	656, 702
LweI	GCATC	2 cut(s)	427, 691
MaeI	CTAG	1 cut(s)	940
MaeII	ACGT	3 cut(s)	261, 284, 498
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	711, 821
MboI	GATC	2 cut(s)	709, 819
MboII	GAAGA	3 cut(s)	226, 337, 745
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	7 cut(s)	15, 335, 424, 550, 568, 652, 857
MmeI	TCCRAC	1 cut(s)	447
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	288, 567
MspA1I	CMGCKG	3 cut(s)	161, 433, 647
MspI	CCGG	6 cut(s)	122, 151, 165, 220, 280, 311
MspR9I	CCNGG	6 cut(s)	122, 220, 299, 311, 724, 907
MvaI	CCWGG	3 cut(s)	299, 724, 907
MvnI	CGCG	4 cut(s)	63, 161, 225, 488
MwoI	GCNNNNNNNGC	2 cut(s)	872, 931
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	3 cut(s)	122, 220, 311
NdeII	GATC	2 cut(s)	709, 819
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	34, 745, 871
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	107, 205, 490, 841
PfoI	TCCNGGA	2 cut(s)	297, 905
PkrI	GCNGC	7 cut(s)	6, 163, 244, 247, 432, 646, 717
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	297, 722, 905
PspGI	CCWGG	3 cut(s)	297, 722, 905
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	41, 124
PsuI	RGATCY	1 cut(s)	819
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	58, 827
RsaNI	GTAC	2 cut(s)	57, 826
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	288, 567
SatI	GCNGC	7 cut(s)	5, 162, 243, 246, 431, 645, 716
Sau3AI	GATC	2 cut(s)	709, 819
Sau96I	GGNCC	2 cut(s)	41, 124
ScrFI	CCNGG	6 cut(s)	122, 220, 299, 311, 724, 907
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	427, 691
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	7 cut(s)	15, 335, 424, 550, 568, 652, 857
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	940
StyD4I	CCNGG	6 cut(s)	120, 218, 297, 309, 722, 905
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	3 cut(s)	264, 287, 501
TaqI	TCGA	3 cut(s)	95, 321, 627
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	15, 335, 424, 550, 568, 652, 857
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	4 cut(s)	164, 245, 248, 433
TfiI	GAWTC	4 cut(s)	107, 205, 490, 841
Tru1I	TTAA	2 cut(s)	288, 567
Tru9I	TTAA	2 cut(s)	288, 567
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	4, 644, 715
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	356, 522, 587, 758
TspGWI	ACGGA	2 cut(s)	57, 434
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	15
XspI	CTAG	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.