Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Reverse (-)

19296900 .. 19298013

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTGCACGGCCCTTCTCTACTCTGTACCCGCGCTCCGATATCCCTTTCTTGCCGCGCCGTTTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACAGAGCCAAGCCAAAACCCCGGCGCCGGAAAACGGCAGCCGGCGGAAATGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACACTCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTGCCGCCGTTGACGGCGGCGACGACGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGTTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTATTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCCTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCGAGGTCTGTGAAGATAGACATGAATATTGAGAGGGATTTGGCGTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGGGGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCGTCGTGGATTGATGTGAAGGAGCTAACTCTGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

35.27

Weight (kDa)

5.47

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	117
AccII	CGCG	4 cut(s)	33, 57, 195, 464
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	404
AcyI	GRCGYC	2 cut(s)	118, 440
AfaI	GTAC	2 cut(s)	28, 803
AfiI	CCNNNNNNNGG	4 cut(s)	120, 127, 195, 687
AgsI	TTSAA	2 cut(s)	643, 751
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	323, 564, 623, 649, 901
AluI	AGCT	5 cut(s)	323, 564, 623, 649, 901
Alw26I	GTCTC	3 cut(s)	365, 386, 753
AlwI	GGATC	1 cut(s)	803
AoxI	GGCC	4 cut(s)	10, 404, 636, 875
ApeKI	GCWGC	4 cut(s)	131, 323, 620, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	5 cut(s)	35, 59, 120, 195, 853
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	4 cut(s)	92, 115, 190, 281
AxyI	CCTNAGG	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	4 cut(s)	143, 310, 632, 678
BceAI	ACGGC	8 cut(s)	25, 44, 144, 314, 352, 390, 391, 862
BcgI	CGANNNNNNTGC	4 cut(s)	449, 483, 821, 855
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	4 cut(s)	92, 115, 190, 281
BcoDI	GTCTC	3 cut(s)	365, 386, 753
BfaI	CTAG	1 cut(s)	916
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	9 cut(s)	55, 132, 213, 216, 324, 327, 340, 621, 692
BlsI	GCNGC	9 cut(s)	56, 133, 214, 217, 325, 328, 341, 622, 693
Bme1390I	CCNGG	5 cut(s)	92, 115, 190, 269, 281
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	84, 119
BmrFI	CCNGG	5 cut(s)	92, 115, 190, 269, 281
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	403, 667
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	4 cut(s)	92, 115, 190, 281
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	118, 440
BsaJI	CCNNGG	3 cut(s)	113, 179, 698
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 410, 440
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 127, 195, 687
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	579
Bse21I	CCTNAGG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	113, 179, 698
BseGI	GGATG	4 cut(s)	418, 487, 574, 682
BseLI	CCNNNNNNNGG	4 cut(s)	120, 127, 195, 687
BseMII	CTCAG	3 cut(s)	615, 773, 782
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	4 cut(s)	217, 383, 401, 404
BseXI	GCAGC	4 cut(s)	143, 310, 632, 678
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	4 cut(s)	33, 57, 195, 464
BshFI	GGCC	4 cut(s)	12, 406, 638, 877
BshNI	GGYRCC	1 cut(s)	117
BsiSI	CCGG	7 cut(s)	92, 115, 121, 135, 190, 250, 281
BslFI	GGGAC	2 cut(s)	251, 842
BslI	CCNNNNNNNGG	4 cut(s)	120, 127, 195, 687
BsmAI	GTCTC	3 cut(s)	365, 386, 753
BsmBI	CGTCTC	2 cut(s)	365, 386
BsmFI	GGGAC	2 cut(s)	251, 842
BsnI	GGCC	4 cut(s)	12, 406, 638, 877
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	2 cut(s)	685, 795
BspANI	GGCC	4 cut(s)	12, 406, 638, 877
BspCNI	CTCAG	3 cut(s)	616, 774, 781
BspFNI	CGCG	4 cut(s)	33, 57, 195, 464
BspLI	GGNNCC	2 cut(s)	84, 119
BspPI	GGATC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	113, 179, 698
BssMI	GATC	2 cut(s)	685, 795
BssNI	GRCGYC	2 cut(s)	118, 440
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	764
BstACI	GRCGYC	2 cut(s)	118, 440
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	136, 197, 462
BstDEI	CTNAG	3 cut(s)	624, 768, 782
BstF5I	GGATG	4 cut(s)	418, 487, 574, 682
BstFNI	CGCG	4 cut(s)	33, 57, 195, 464
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	5 cut(s)	35, 59, 120, 195, 853
BstKTI	GATC	2 cut(s)	688, 798
BstMAI	GTCTC	3 cut(s)	365, 386, 753
BstMBI	GATC	2 cut(s)	685, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	848, 907
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	5 cut(s)	90, 113, 188, 267, 279
BstUI	CGCG	4 cut(s)	33, 57, 195, 464
BstV1I	GCAGC	4 cut(s)	143, 310, 632, 678
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	795
Bsu36I	CCTNAGG	1 cut(s)	768
BsuRI	GGCC	4 cut(s)	12, 406, 638, 877
BtsCI	GGATG	4 cut(s)	418, 487, 574, 682
Cac8I	GCNNGC	3 cut(s)	136, 197, 462
CfoI	GCGC	5 cut(s)	35, 59, 120, 195, 853
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	27, 802
CviAII	CATG	2 cut(s)	718, 844
CviQI	GTAC	2 cut(s)	27, 802
DdeI	CTNAG	3 cut(s)	624, 768, 782
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	2 cut(s)	687, 797
DpnII	GATC	2 cut(s)	685, 795
EaeI	YGGCCR	1 cut(s)	404
EciI	GGCGGA	3 cut(s)	153, 165, 214
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
Esp3I	CGTCTC	2 cut(s)	365, 386
FaeI	CATG	2 cut(s)	721, 847
FaiI	YATR	5 cut(s)	612, 719, 744, 845, 913
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	2 cut(s)	251, 842
FatI	CATG	2 cut(s)	717, 843
FauI	CCCGC	2 cut(s)	38, 188
Fnu4HI	GCNGC	9 cut(s)	55, 132, 213, 216, 324, 327, 340, 621, 692
FokI	GGATG	4 cut(s)	425, 494, 561, 689
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	9 cut(s)	55, 132, 213, 216, 324, 327, 340, 621, 692
FspBI	CTAG	1 cut(s)	916
FspI	TGCGCA	1 cut(s)	852
GlaI	GCGC	5 cut(s)	34, 58, 119, 194, 852
GluI	GCNGC	9 cut(s)	55, 132, 213, 216, 324, 327, 340, 621, 692
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	12, 406, 638, 877
HapII	CCGG	7 cut(s)	92, 115, 121, 135, 190, 250, 281
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	5 cut(s)	35, 59, 120, 195, 853
Hin1I	GRCGYC	2 cut(s)	118, 440
Hin1II	CATG	2 cut(s)	721, 847
Hin6I	GCGC	5 cut(s)	33, 57, 118, 193, 851
HinP1I	GCGC	5 cut(s)	33, 57, 118, 193, 851
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	4 cut(s)	77, 175, 466, 817
HpaII	CCGG	7 cut(s)	92, 115, 121, 135, 190, 250, 281
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	9 cut(s)	39, 76, 82, 180, 445, 471, 699, 783, 822
Hpy188III	TCNNGA	4 cut(s)	66, 172, 292, 604
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	5 cut(s)	347, 350, 353, 445, 883
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	3 cut(s)	231, 254, 474
HpyCH4V	TGCA	3 cut(s)	7, 223, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	848, 907
HpyF3I	CTNAG	3 cut(s)	624, 768, 782
HpySE526I	ACGT	3 cut(s)	231, 254, 474
Hsp92I	GRCGYC	2 cut(s)	118, 440
Hsp92II	CATG	2 cut(s)	721, 847
HspAI	GCGC	5 cut(s)	33, 57, 118, 193, 851
KasI	GGCGCC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	685, 795
LmnI	GCTCC	6 cut(s)	40, 82, 204, 271, 646, 898
Lsp1109I	GCAGC	4 cut(s)	143, 310, 632, 678
LweI	GCATC	2 cut(s)	403, 667
MaeI	CTAG	1 cut(s)	916
MaeII	ACGT	3 cut(s)	231, 254, 474
MalI	GATC	2 cut(s)	687, 797
MboI	GATC	2 cut(s)	685, 795
MboII	GAAGA	3 cut(s)	196, 307, 721
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	6 cut(s)	305, 400, 526, 544, 628, 833
Mly113I	GGCGCC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	390, 423
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	2 cut(s)	258, 543
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	7 cut(s)	92, 115, 121, 135, 190, 250, 281
MspR9I	CCNGG	5 cut(s)	92, 115, 190, 269, 281
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	4 cut(s)	33, 57, 195, 464
MwoI	GCNNNNNNNGC	2 cut(s)	848, 907
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	118
NciI	CCSGG	4 cut(s)	92, 115, 190, 281
NdeII	GATC	2 cut(s)	685, 795
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	721, 847
NlaIV	GGNNCC	2 cut(s)	84, 119
NsbI	TGCGCA	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	77, 175, 466, 817
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	9 cut(s)	56, 133, 214, 217, 325, 328, 341, 622, 693
PluTI	GGCGCC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	232
PshBI	ATTAAT	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	84, 119
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	28, 803
RsaNI	GTAC	2 cut(s)	27, 802
SaqAI	TTAA	2 cut(s)	258, 543
SatI	GCNGC	9 cut(s)	55, 132, 213, 216, 324, 327, 340, 621, 692
Sau3AI	GATC	2 cut(s)	685, 795
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	5 cut(s)	92, 115, 190, 269, 281
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	403, 667
SfoI	GGCGCC	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	305, 400, 526, 544, 628, 833
SseBI	AGGCCT	1 cut(s)	638
SspDI	GGCGCC	1 cut(s)	117
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	916
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	5 cut(s)	90, 113, 188, 267, 279
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	3 cut(s)	234, 257, 477
TaqI	TCGA	3 cut(s)	65, 291, 603
TasI	AATT	6 cut(s)	305, 400, 526, 544, 628, 833
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	5 cut(s)	57, 215, 218, 329, 342
TfiI	GAWTC	4 cut(s)	77, 175, 466, 817
Tru1I	TTAA	2 cut(s)	258, 543
Tru9I	TTAA	2 cut(s)	258, 543
TseI	GCWGC	4 cut(s)	131, 323, 620, 691
TspDTI	ATGAA	5 cut(s)	159, 326, 498, 563, 734
TspGWI	ACGGA	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	543
XspI	CTAG	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.