Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007334

Physical Location & Seq

Genomic Coordinates Forward (+)

18796976 .. 18798164

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTGCGCATTCAAACTTGTCTCCCGTCGATACTACATATTTCCCCTCTGCACCGCACCCGCACTCTAAACTCTCTTCCTTGCTACGCTATTTCGAGAAAACCCGATTCGGAGTCCCGCCTCAAAGCTCGCTCCAATCCCAAACCGAAATCTCAGCGCCCAAAGACCGAAACTTCTGAAGACGAGGGTGACGAGCCAGGCGAGACGTTTCCAGCGACGATTCCGAGAAAGCCCCGGCGCGGGCGCAGAAGCGAAGCGGCGGCGGTCGAAGATTACGTGCGGGAGTCACTCGATCGGACGTTTGCGTCGATCAGAGAGCAGAACCCAGAAATTGTTGAGAAGAAAGATGGAGTAATGAAGAGGAAAGTGGACGATGATGGGGAGGATGATGAGGATGAGGGTTTTGGAAGTGAGAAGAGCATGGTGGTTGAGGAGGAGAGCAAGGATTGGCCGTTGGATGCCGATGTGGGGTGGGGGATTCGGGCTTCGGAGTACTTCGAGAACCACCCGATTCGAAACGTAGTGGGTGAACATGGGGTTGAGATTGATTGGGAAGGCGAGGTTGAAGACAATTGGGTGAAGGAGATCAATTGCTTGGAGTGGGAGAGCTTTGCCTTTCACCCTAGTCCTCTTCTCGTTCTTGTTTTTGAGAGGTACAACAGAGCAAGCGAGAATTGGAAGGCGTTGAAGGAGCTCGAAAAGGCGGTCAAGGTCTATTGGAATGCCAAAGATCGATTGCCTCCTCGGTCGGTTAAGATAGACATCAACATTGAGAGAGATTTGGCTTATGCTCTTAAAGTTAGAGACTGTCCTCAGATTTTGTTTGTACGAGGAAACAGGATCTTGTACAGAGAGAAAGATTCGGACTGCAGAAGAATTGGTTCCGATGATTGCGCATTTCTACTACAATGCAAAGAGGCCATCCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

35.86

Weight (kDa)

5.24

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28590
fragaria_vesca	FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960 FvH4_2g20960
malus_domestica	MD05G1193000.v1.1 MD10G1179400.v1.1
prunus_persica	Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1 Prupe.8G219200_v2.0.a1
pyrus_communis	pycom10g15560
rosa_chinensis	RchiOBHm_Chr6g0287341
rosa_laevigata	RLG00000012497
rosa_multiflora	Rmu_sc0007029.1_g000030 Rmu_sc0041802.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181520
rosa_rugosa	Rorug06G0187200
rosa_samantha	Rh6AG298600 Rh6BG304200 Rh6CG305500 Rh6CG312700 Rh6DG296000
rosa_wichuraiana	Rw6G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
Acc16I	TGCGCA	2 cut(s)	8, 895
AccII	CGCG	1 cut(s)	240
AciI	CCGC	9 cut(s)	55, 61, 118, 240, 257, 260, 263, 280, 704
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	494, 656, 828, 848
AfiI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
AgsI	TTSAA	3 cut(s)	14, 566, 688
AjnI	CCWGG	2 cut(s)	196, 924
AluBI	AGCT	3 cut(s)	128, 609, 694
AluI	AGCT	3 cut(s)	128, 609, 694
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	3 cut(s)	26, 197, 798
AlwI	GGATC	1 cut(s)	848
AoxI	GGCC	2 cut(s)	449, 918
ApeKI	GCWGC	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	690, 722
Asp700I	GAANNNNTTC	1 cut(s)	880
AspLEI	GCGC	5 cut(s)	9, 159, 240, 246, 896
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	200, 539, 589, 611
AsuII	TTCGAA	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	2 cut(s)	186, 573
Bbv12I	GWGCWC	1 cut(s)	696
BccI	CCATC	3 cut(s)	341, 371, 929
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	2 cut(s)	198, 926
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	26, 197, 798
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	868
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	3 cut(s)	5, 258, 261
BlsI	GCNGC	3 cut(s)	6, 259, 262
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	198, 235, 926
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	3 cut(s)	198, 235, 926
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	186, 573
Bpu14I	TTCGAA	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	761
BsaJI	CCNNGG	2 cut(s)	233, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 240, 468
Bse8I	GATNNNNATC	1 cut(s)	761
BseBI	CCWGG	2 cut(s)	198, 926
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	2 cut(s)	233, 743
BseGI	GGATG	4 cut(s)	391, 400, 463, 921
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
BseMII	CTCAG	2 cut(s)	167, 827
BseRI	GAGGAG	3 cut(s)	446, 449, 732
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	3 cut(s)	267, 295, 749
BshFI	GGCC	2 cut(s)	451, 920
BshVI	ATCGAT	1 cut(s)	733
BsiEI	CGRYCG	3 cut(s)	267, 295, 749
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	3 cut(s)	239, 240, 468
BsmAI	GTCTC	3 cut(s)	26, 197, 798
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	2 cut(s)	9, 727
BsnI	GGCC	2 cut(s)	451, 920
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	292, 309, 585, 730, 840
BspACI	CCGC	9 cut(s)	55, 61, 118, 240, 257, 260, 263, 280, 704
BspANI	GGCC	2 cut(s)	451, 920
BspCNI	CTCAG	2 cut(s)	166, 826
BspDI	ATCGAT	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	883
BspMAI	CTGCAG	1 cut(s)	872
BspPI	GGATC	1 cut(s)	848
BspQI	GCTCTTC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	514
BsrGI	TGTACA	1 cut(s)	846
BssECI	CCNNGG	2 cut(s)	233, 743
BssMI	GATC	5 cut(s)	292, 309, 585, 730, 840
Bst2UI	CCWGG	2 cut(s)	198, 926
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	4 cut(s)	81, 353, 410, 636
BstAUI	TGTACA	1 cut(s)	846
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	130, 242, 667
BstDEI	CTNAG	2 cut(s)	153, 813
BstF5I	GGATG	4 cut(s)	391, 400, 463, 921
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	5 cut(s)	9, 159, 240, 246, 896
BstKTI	GATC	5 cut(s)	295, 312, 588, 733, 843
BstMAI	GTCTC	3 cut(s)	26, 197, 798
BstMBI	GATC	5 cut(s)	292, 309, 585, 730, 840
BstMCI	CGRYCG	3 cut(s)	267, 295, 749
BstNI	CCWGG	2 cut(s)	198, 926
BstSCI	CCNGG	3 cut(s)	196, 233, 924
BstSFI	CTRYAG	1 cut(s)	868
BstUI	CGCG	1 cut(s)	240
BstV2I	GAAGAC	2 cut(s)	186, 573
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	451, 920
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	4 cut(s)	391, 400, 463, 921
Cac8I	GCNNGC	3 cut(s)	130, 242, 667
CfoI	GCGC	5 cut(s)	9, 159, 240, 246, 896
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	4 cut(s)	493, 655, 827, 847
CviAII	CATG	2 cut(s)	421, 533
CviJI	RGCY	9 cut(s)	128, 196, 232, 451, 485, 609, 694, 785, 920
CviKI_1	RGCY	9 cut(s)	128, 196, 232, 451, 485, 609, 694, 785, 920
CviQI	GTAC	4 cut(s)	493, 655, 827, 847
DdeI	CTNAG	2 cut(s)	153, 813
DpnI	GATC	5 cut(s)	294, 311, 587, 732, 842
DpnII	GATC	5 cut(s)	292, 309, 585, 730, 840
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	4 cut(s)	81, 353, 410, 636
EarI	CTCTTC	4 cut(s)	81, 353, 410, 636
Ecl136II	GAGCTC	1 cut(s)	694
Eco24I	GRGCYC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	196, 924
EcoT38I	GRGCYC	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	2 cut(s)	424, 536
FaiI	YATR	4 cut(s)	39, 422, 534, 789
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	420, 532
FauI	CCCGC	4 cut(s)	68, 125, 233, 273
Fnu4HI	GCNGC	3 cut(s)	5, 258, 261
FokI	GGATG	4 cut(s)	398, 407, 470, 908
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	5, 258, 261
FspBI	CTAG	1 cut(s)	624
FspI	TGCGCA	2 cut(s)	8, 895
GlaI	GCGC	5 cut(s)	8, 158, 239, 245, 895
GluI	GCNGC	3 cut(s)	5, 258, 261
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	451, 920
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	5 cut(s)	9, 159, 240, 246, 896
Hin1II	CATG	2 cut(s)	424, 536
Hin6I	GCGC	5 cut(s)	7, 157, 238, 244, 894
HinP1I	GCGC	5 cut(s)	7, 157, 238, 244, 894
HinfI	GANTC	7 cut(s)	107, 113, 220, 284, 478, 511, 860
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	4 cut(s)	200, 539, 589, 611
Hpy166II	GTNNAC	2 cut(s)	370, 530
Hpy188I	TCNGA	9 cut(s)	112, 178, 225, 297, 314, 490, 816, 865, 886
Hpy188III	TCNNGA	2 cut(s)	96, 499
Hpy8I	GTNNAC	2 cut(s)	370, 530
Hpy99I	CGWCG	3 cut(s)	31, 220, 310
HpyAV	CCTTC	4 cut(s)	548, 574, 673, 682
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	4 cut(s)	206, 276, 299, 519
HpyCH4V	TGCA	3 cut(s)	52, 870, 912
HpyF3I	CTNAG	2 cut(s)	153, 813
HpySE526I	ACGT	4 cut(s)	206, 276, 299, 519
Hsp92II	CATG	2 cut(s)	424, 536
HspAI	GCGC	5 cut(s)	7, 157, 238, 244, 894
Kzo9I	GATC	5 cut(s)	292, 309, 585, 730, 840
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	2 cut(s)	137, 691
LpnPI	CCDG	7 cut(s)	183, 210, 225, 248, 339, 823, 911
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	4 cut(s)	206, 276, 299, 519
MaeIII	GTNAC	2 cut(s)	188, 285
MalI	GATC	5 cut(s)	294, 311, 587, 732, 842
MboI	GATC	5 cut(s)	292, 309, 585, 730, 840
MboII	GAAGA	9 cut(s)	68, 191, 281, 352, 370, 427, 578, 623, 885
MfeI	CAATTG	2 cut(s)	571, 589
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	5 cut(s)	330, 571, 589, 673, 876
MlyI	GAGTC	2 cut(s)	122, 293
MmeI	TCCRAC	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	2 cut(s)	753, 795
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	198, 235, 926
MunI	CAATTG	2 cut(s)	571, 589
Mva1269I	GAATGC	2 cut(s)	9, 727
MvaI	CCWGG	2 cut(s)	198, 926
MvnI	CGCG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	5 cut(s)	292, 309, 585, 730, 840
NlaIII	CATG	2 cut(s)	424, 536
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	2 cut(s)	188, 285
NsbI	TGCGCA	2 cut(s)	8, 895
NspV	TTCGAA	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	5 cut(s)	189, 198, 212, 273, 305
PctI	GAATGC	2 cut(s)	9, 727
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	5 cut(s)	107, 220, 478, 511, 860
PfoI	TCCNGGA	1 cut(s)	924
PkrI	GCNGC	3 cut(s)	6, 259, 262
Ple19I	CGATCG	1 cut(s)	295
PleI	GAGTC	2 cut(s)	121, 292
PpsI	GAGTC	2 cut(s)	121, 292
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	196, 924
PspGI	CCWGG	2 cut(s)	196, 924
PspN4I	GGNNCC	1 cut(s)	883
PstI	CTGCAG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	840
PvuI	CGATCG	1 cut(s)	295
RsaI	GTAC	4 cut(s)	494, 656, 828, 848
RsaNI	GTAC	4 cut(s)	493, 655, 827, 847
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	753, 795
SatI	GCNGC	3 cut(s)	5, 258, 261
Sau3AI	GATC	5 cut(s)	292, 309, 585, 730, 840
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	2 cut(s)	122, 293
ScrFI	CCNGG	3 cut(s)	198, 235, 926
SduI	GDGCHC	1 cut(s)	696
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	868
SfuI	TTCGAA	1 cut(s)	514
Sse9I	AATT	5 cut(s)	330, 571, 589, 673, 876
SsiI	CCGC	9 cut(s)	55, 61, 118, 240, 257, 260, 263, 280, 704
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	3 cut(s)	196, 233, 924
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	4 cut(s)	209, 279, 302, 522
TaqI	TCGA	9 cut(s)	29, 95, 267, 291, 308, 498, 514, 696, 733
TaqII	GACCGA	2 cut(s)	182, 735
TasI	AATT	5 cut(s)	330, 571, 589, 673, 876
TatI	WGTACW	2 cut(s)	492, 846
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	5 cut(s)	107, 220, 478, 511, 860
Tru1I	TTAA	2 cut(s)	753, 795
Tru9I	TTAA	2 cut(s)	753, 795
TseFI	GTSAC	2 cut(s)	188, 285
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	188, 285
TspDTI	ATGAA	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.