AT4G28630

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14138321 .. 14141054
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28630.1

Sequence Viewer

Length: 2037 bp
ATGATGAGGGGATCTCGGTTTCTCCTCTCTCGCGCTTCTCTGTATCACCGTCTTCGCTCTGATCATCACCATCACAGTTTCTCCAGTTTTATCAAACGTAGCTCAATTCAGAGATCACCAGCTATCAATGCATTCTTCACCGATCCATCTCCATCTCCATCTCCAGTCAACGCACGAGTCTTCTTCTTCTCAACTTCAACTTCAACTCCAAATCAAGATCAAACCAAAACAGCATCATCTAAGAAGATCCTCCGCACGATTTCAAGCTATCTATGGATGAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCTCATAGGAGCTAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAATTATCTATCGATTTACTCTCTTCATATTCATCTTCAACAATCACTGATTCAAATCCTTATCTACTTGCTGCTTTCGCTACTCCTTCTTCCGTTCTCATTGGCTATGGCATTGCTCGATCTGGATCTTCAGCTTTTAACGAGCTTCGTACTGCTGTTTTCTCCAAAGTATCTCTCCGCACAATACGATCTGTTTCTCGTAAAGTGCTCTCGCATTTACATGATCTTGATCTTCGTTACCATTTGAATCGAGAAACAGGAGCTTTGAATAGAATCATTGACCGTGGAAGTCGCGCGATTAACACGATCCTCTCTGCTATGGTTTTCAATGTTGTTCCAACGATCTTGGAGATATCAATGGTCACAGGTATATTAGCATACAATTTTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATAGCTTTCACATTGGTTGTGACACAGTATAGAACTAAGTTTAGAAAAGCTATGAACCAAGCTGATAATGATGCAAGCACAAGAGCTATTGATTCTCTTGTAAACTACGAGACTGTTAAGTATTTTAACAACGAAGATTACGAAGCGAGAAAGTACGATGATTTACTCGGAAGATATGAAGATGCTGCATTGCAAACTCAGAAGAGTCTTGCGTTTTTAGATTTTGGACAGAGTTTTATATTTAGTACAGCTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGACAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTCGGTGGTGTTTACCGTGAAACCGTTCAGGGTCTTGTTGATATGAAATCATTGTTCCAGTTGCTAGAGGAGAGATCCGATATTGGAGATAAAGATACAGAGACAAAGCTACCTCCTCTTGTTCTGAGAGGTGGAAGCATCAGTTTTGAGAATGTACATTTTAGTTATCTGCCAGAGAGAAAGATTTTGGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTAGCGATTGTTGGTAGTAGCGGAAGCGGCAAATCGACGATTCTTAGAATGATTTTCAGGTTCTTTGACACAGATTCTGGTAATGTTAGGATTGATGGTCAAGATATAAAGGAAGTGACACTAGAGAGTCTTCGAAGCTGCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAACATTCACTATGGAAACCTTTCAGCAACAGAAGAAGAGGTGTACGATGCAGCTAGGCGAGCAGTGATTCACGATACGATCATGAAATTTCCGGATAAATATTCGACCGCGGTGGGAGAAAGAGGGCTGATGCTGAGTGGTGGAGAAAAACAAAGAGTGGCACTTGCTCGTGCCTTTCTGAAATCACCAGCGATTCTCTTGTGTGACGAAGCAACGAATGCGCTTGATAGTAAAACCGAGGCAGAGATAATGAAAACGTTCAGGTCGCTAGCGAGTAACAGAACATGCATTTTCATTGCACATAGGCTGACCACTGCGATGCAATGTGATGAGATAATAGTAATGGAGAAAGGGAAAGTGGTGGAAAAAGGGACACACCAAGTGTTGTTGGAGAAATCTGGCAGATACGCTAAATTATGGACACAACAAAACAGTACACTGGAGGTGTGA

Protein Analysis

678

Amino Acids

75.47

Weight (kDa)

9.01

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 103 - 387 4.5e-39 ABC transporter transmembrane region
ABC_tran PF00005 453 - 602 3.4e-33 ABC transporter
SMC_N PF02463 466 - 646 4.4e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1378
AccB1I GGYRCC 1 cut(s) 1378
AccII CGCG 4 cut(s) 33, 666, 668, 1697
AccIII TCCGGA 1 cut(s) 1678
AciI CCGC 6 cut(s) 253, 550, 1416, 1422, 1695, 1697
AclI AACGTT 1 cut(s) 1844
AclWI GGATC 7 cut(s) 19, 137, 241, 505, 673, 805, 1239
AcsI RAATTY 1 cut(s) 1673
AcuI CTGAAG 1 cut(s) 486
AdeI CACNNNGTG 1 cut(s) 1969
AfaI GTAC 7 cut(s) 523, 959, 1051, 1326, 1380, 1631, 2023
Alw21I GWGCWC 2 cut(s) 582, 1566
Alw26I GTCTC 4 cut(s) 332, 908, 1158, 1265
AlwI GGATC 7 cut(s) 19, 137, 241, 505, 673, 805, 1239
AlwNI CAGNNNCTG 1 cut(s) 1472
Aor13HI TCCGGA 1 cut(s) 1678
ApeKI GCWGC 5 cut(s) 314, 443, 989, 1533, 1637
ApoI RAATTY 1 cut(s) 1673
Asp700I GAANNNNTTC 3 cut(s) 1194, 1606, 1844
Asp718I GGTACC 1 cut(s) 1378
AspLEI GCGC 3 cut(s) 35, 668, 1810
AspS9I GGNCC 1 cut(s) 761
AsuHPI GGTGA 8 cut(s) 38, 59, 108, 130, 1127, 1135, 1141, 1764
AsuII TTCGAA 1 cut(s) 1528
AsuNHI GCTAGC 1 cut(s) 1855
AvaII GGWCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 1378
BauI CACGAG 2 cut(s) 174, 1755
BbsI GAAGAC 4 cut(s) 44, 172, 1130, 1517
Bbv12I GWGCWC 2 cut(s) 582, 1566
BbvI GCAGC 5 cut(s) 301, 430, 976, 1520, 1649
BccI CCATC 7 cut(s) 78, 154, 160, 166, 1120, 1355, 1484
BclI TGATCA 2 cut(s) 61, 777
BcoDI GTCTC 4 cut(s) 332, 908, 1158, 1265
BfaI CTAG 4 cut(s) 1235, 1517, 1641, 1856
BisI GCNGC 6 cut(s) 315, 444, 990, 1423, 1534, 1638
BlsI GCNGC 6 cut(s) 316, 445, 991, 1424, 1535, 1639
Bme18I GGWCC 1 cut(s) 761
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 1 cut(s) 1380
BmsI GCATC 7 cut(s) 242, 865, 976, 1317, 1624, 1707, 1896
BmtI GCTAGC 1 cut(s) 1859
BpiI GAAGAC 4 cut(s) 44, 172, 1130, 1517
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 67, 147
Bpu14I TTCGAA 1 cut(s) 1528
BpuEI CTTGAG 2 cut(s) 1068, 1536
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 3 cut(s) 426, 496, 600
BsaJI CCNNGG 3 cut(s) 655, 1695, 1824
BsaWI WCCGGW 1 cut(s) 1678
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 190, 220
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 4 cut(s) 84, 164, 1228, 2031
Bse3DI GCAATG 4 cut(s) 483, 992, 1881, 1916
Bse8I GATNNNNATC 3 cut(s) 426, 496, 600
BseAI TCCGGA 1 cut(s) 1678
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 655, 1695, 1824
BseGI GGATG 2 cut(s) 282, 1366
BseJI GATNNNNATC 3 cut(s) 426, 496, 600
BseMI GCAATG 4 cut(s) 483, 992, 1881, 1916
BseMII CTCAG 3 cut(s) 1016, 1286, 1712
BseNI ACTGG 4 cut(s) 84, 164, 1228, 2031
BseRI GAGGAG 3 cut(s) 14, 1253, 1275
BseXI GCAGC 5 cut(s) 301, 430, 976, 1520, 1649
Bsh1236I CGCG 4 cut(s) 33, 666, 668, 1697
Bsh1285I CGRYCG 1 cut(s) 1695
BshNI GGYRCC 1 cut(s) 1378
BshVI ATCGAT 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 1695
BsiHKAI GWGCWC 2 cut(s) 582, 1566
BsiSI CCGG 2 cut(s) 1382, 1679
BslFI GGGAC 2 cut(s) 1532, 1972
BsmAI GTCTC 4 cut(s) 332, 908, 1158, 1265
BsmFI GGGAC 2 cut(s) 1532, 1972
BsmI GAATGC 2 cut(s) 131, 1810
Bsp119I TTCGAA 1 cut(s) 1528
Bsp1286I GDGCHC 2 cut(s) 582, 1566
Bsp13I TCCGGA 1 cut(s) 1678
Bsp1407I TGTACA 1 cut(s) 1324
BspACI CCGC 6 cut(s) 253, 550, 1416, 1422, 1695, 1697
BspCNI CTCAG 3 cut(s) 1015, 1287, 1713
BspDI ATCGAT 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 1678
BspFNI CGCG 4 cut(s) 33, 666, 668, 1697
BspHI TCATGA 1 cut(s) 1668
BspLI GGNNCC 1 cut(s) 1380
BspOI GCTAGC 1 cut(s) 1859
BspPI GGATC 7 cut(s) 19, 137, 241, 505, 673, 805, 1239
BspQI GCTCTTC 1 cut(s) 1571
BspT104I TTCGAA 1 cut(s) 1528
BspT107I GGYRCC 1 cut(s) 1378
BsrDI GCAATG 4 cut(s) 483, 992, 1881, 1916
BsrFI RCCGGY 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 1324
BsrI ACTGG 4 cut(s) 84, 164, 1228, 2031
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 3 cut(s) 655, 1695, 1824
BssSI CACGAG 2 cut(s) 174, 1755
Bst2BI CACGAG 2 cut(s) 174, 1755
Bst6I CTCTTC 6 cut(s) 374, 400, 1001, 1161, 1571, 1617
BstAPI GCANNNNNTGC 1 cut(s) 1805
BstAUI TGTACA 1 cut(s) 1324
BstBI TTCGAA 1 cut(s) 1528
BstC8I GCNNGC 3 cut(s) 880, 1647, 1857
BstDEI CTNAG 7 cut(s) 240, 339, 840, 1002, 1295, 1439, 1721
BstDSI CCRYGG 2 cut(s) 655, 1695
BstF5I GGATG 2 cut(s) 282, 1366
BstFNI CGCG 4 cut(s) 33, 666, 668, 1697
BstHHI GCGC 3 cut(s) 35, 668, 1810
BstMAI GTCTC 4 cut(s) 332, 908, 1158, 1265
BstMCI CGRYCG 1 cut(s) 1695
BstMWI GCNNNNNNNGC 6 cut(s) 128, 320, 449, 1422, 1646, 1805
BstNSI RCATGY 1 cut(s) 1875
BstUI CGCG 4 cut(s) 33, 666, 668, 1697
BstV1I GCAGC 5 cut(s) 301, 430, 976, 1520, 1649
BstV2I GAAGAC 4 cut(s) 44, 172, 1130, 1517
BstX2I RGATCY 4 cut(s) 11, 246, 497, 1244
BstYI RGATCY 4 cut(s) 11, 246, 497, 1244
Bsu15I ATCGAT 1 cut(s) 384
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 2 cut(s) 655, 1695
BtgZI GCGATG 2 cut(s) 295, 1919
BtsCI GGATG 2 cut(s) 282, 1366
BtsI GCAGTG 2 cut(s) 1656, 1899
BtsIMutI CAGTG 4 cut(s) 417, 1656, 1899, 2024
Cac8I GCNNGC 3 cut(s) 880, 1647, 1857
CaiI CAGNNNCTG 1 cut(s) 1472
CciI TCATGA 1 cut(s) 1668
CfoI GCGC 3 cut(s) 35, 668, 1810
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 1 cut(s) 761
Cfr42I CCGCGG 1 cut(s) 1698
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 7 cut(s) 522, 958, 1050, 1325, 1379, 1630, 2022
CviAII CATG 3 cut(s) 593, 1669, 1872
CviQI GTAC 7 cut(s) 522, 958, 1050, 1325, 1379, 1630, 2022
DdeI CTNAG 7 cut(s) 240, 339, 840, 1002, 1295, 1439, 1721
DraIII CACNNNGTG 1 cut(s) 1969
Eam1104I CTCTTC 6 cut(s) 374, 400, 1001, 1161, 1571, 1617
EarI CTCTTC 6 cut(s) 374, 400, 1001, 1161, 1571, 1617
Eco32I GATATC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 726
EcoT22I ATGCAT 2 cut(s) 133, 1877
FaeI CATG 3 cut(s) 596, 1672, 1875
FaqI GGGAC 2 cut(s) 1532, 1972
FatI CATG 3 cut(s) 592, 1668, 1871
FbaI TGATCA 2 cut(s) 61, 777
Fnu4HI GCNGC 6 cut(s) 315, 444, 990, 1423, 1534, 1638
FokI GGATG 2 cut(s) 289, 1373
Fsp4HI GCNGC 6 cut(s) 315, 444, 990, 1423, 1534, 1638
FspBI CTAG 4 cut(s) 1235, 1517, 1641, 1856
GlaI GCGC 3 cut(s) 34, 667, 1809
GluI GCNGC 6 cut(s) 315, 444, 990, 1423, 1534, 1638
GsuI CTGGAG 2 cut(s) 67, 147
HapII CCGG 2 cut(s) 1382, 1679
HhaI GCGC 3 cut(s) 35, 668, 1810
Hin1II CATG 3 cut(s) 596, 1672, 1875
Hin6I GCGC 3 cut(s) 33, 666, 1808
HinP1I GCGC 3 cut(s) 33, 666, 1808
HincII GTYRAC 2 cut(s) 169, 1062
HindII GTYRAC 2 cut(s) 169, 1062
HpaII CCGG 2 cut(s) 1382, 1679
HphI GGTGA 8 cut(s) 38, 59, 108, 130, 1127, 1135, 1141, 1764
Hpy166II GTNNAC 6 cut(s) 169, 907, 1062, 1183, 1630, 2024
Hpy188I TCNGA 9 cut(s) 61, 111, 299, 305, 974, 1005, 1249, 1296, 1767
Hpy8I GTNNAC 6 cut(s) 169, 907, 1062, 1183, 1630, 2024
Hpy99I CGWCG 1 cut(s) 1435
HpyAV CCTTC 1 cut(s) 468
HpyCH4IV ACGT 2 cut(s) 97, 1844
HpyCH4V TGCA 9 cut(s) 131, 878, 992, 997, 1536, 1637, 1875, 1886, 1909
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 320, 449, 1422, 1646, 1805
HpyF3I CTNAG 7 cut(s) 240, 339, 840, 1002, 1295, 1439, 1721
HpySE526I ACGT 2 cut(s) 97, 1844
Hsp92II CATG 3 cut(s) 596, 1672, 1875
HspAI GCGC 3 cut(s) 33, 666, 1808
Kpn2I TCCGGA 1 cut(s) 1678
KpnI GGTACC 1 cut(s) 1382
Ksp22I TGATCA 2 cut(s) 61, 777
KspI CCGCGG 1 cut(s) 1698
LguI GCTCTTC 1 cut(s) 1571
LmnI GCTCC 2 cut(s) 335, 632
Lsp1109I GCAGC 5 cut(s) 301, 430, 976, 1520, 1649
LweI GCATC 7 cut(s) 242, 865, 976, 1317, 1624, 1707, 1896
MaeI CTAG 4 cut(s) 1235, 1517, 1641, 1856
MaeII ACGT 2 cut(s) 97, 1844
MaeIII GTNAC 6 cut(s) 608, 733, 823, 1510, 1790, 1862
MfeI CAATTG 1 cut(s) 1148
MflI RGATCY 4 cut(s) 11, 246, 497, 1244
MhlI GDGCHC 2 cut(s) 582, 1566
MluCI AATT 6 cut(s) 105, 374, 754, 1148, 1673, 2000
MlyI GAGTC 4 cut(s) 186, 315, 1018, 1531
MmeI TCCRAC 3 cut(s) 734, 775, 1956
Mph1103I ATGCAT 2 cut(s) 133, 1877
MroI TCCGGA 1 cut(s) 1678
MroXI GAANNNNTTC 3 cut(s) 1194, 1606, 1844
MseI TTAA 4 cut(s) 510, 672, 921, 930
MslI CAYNNNNRTG 2 cut(s) 591, 1904
MspA1I CMGCKG 1 cut(s) 1697
MspI CCGG 2 cut(s) 1382, 1679
MunI CAATTG 1 cut(s) 1148
Mva1269I GAATGC 2 cut(s) 131, 1810
MvnI CGCG 4 cut(s) 33, 666, 668, 1697
MwoI GCNNNNNNNGC 6 cut(s) 128, 320, 449, 1422, 1646, 1805
NheI GCTAGC 1 cut(s) 1855
NlaIII CATG 3 cut(s) 596, 1672, 1875
NlaIV GGNNCC 1 cut(s) 1380
NmuCI GTSAC 4 cut(s) 733, 823, 1510, 1790
NsiI ATGCAT 2 cut(s) 133, 1877
NspI RCATGY 1 cut(s) 1875
NspV TTCGAA 1 cut(s) 1528
PagI TCATGA 1 cut(s) 1668
PciSI GCTCTTC 1 cut(s) 1571
PcsI WCGNNNNNNNCGW 1 cut(s) 942
PctI GAATGC 2 cut(s) 131, 1810
PdmI GAANNNNTTC 3 cut(s) 1194, 1606, 1844
PfeI GAWTC 9 cut(s) 300, 422, 619, 645, 896, 1435, 1469, 1654, 1780
PkrI GCNGC 6 cut(s) 316, 445, 991, 1424, 1535, 1639
PleI GAGTC 4 cut(s) 185, 314, 1017, 1530
PpsI GAGTC 4 cut(s) 185, 314, 1017, 1530
Psp1406I AACGTT 1 cut(s) 1844
PspN4I GGNNCC 1 cut(s) 1380
PspPI GGNCC 1 cut(s) 761
PstNI CAGNNNCTG 1 cut(s) 1472
PsuI RGATCY 4 cut(s) 11, 246, 497, 1244
RsaI GTAC 7 cut(s) 523, 959, 1051, 1326, 1380, 1631, 2023
RsaNI GTAC 7 cut(s) 522, 958, 1050, 1325, 1379, 1630, 2022
RseI CAYNNNNRTG 2 cut(s) 591, 1904
SacII CCGCGG 1 cut(s) 1698
SapI GCTCTTC 1 cut(s) 1571
SaqAI TTAA 4 cut(s) 510, 672, 921, 930
SatI GCNGC 6 cut(s) 315, 444, 990, 1423, 1534, 1638
Sau96I GGNCC 1 cut(s) 761
SchI GAGTC 4 cut(s) 186, 315, 1018, 1531
SduI GDGCHC 2 cut(s) 582, 1566
SfaNI GCATC 7 cut(s) 242, 865, 976, 1317, 1624, 1707, 1896
Sfr303I CCGCGG 1 cut(s) 1698
SfuI TTCGAA 1 cut(s) 1528
SgrBI CCGCGG 1 cut(s) 1698
SinI GGWCC 1 cut(s) 761
SmiMI CAYNNNNRTG 2 cut(s) 591, 1904
SmlI CTYRAG 2 cut(s) 1083, 1551
SmoI CTYRAG 2 cut(s) 1083, 1551
Sse9I AATT 6 cut(s) 105, 374, 754, 1148, 1673, 2000
SsiI CCGC 6 cut(s) 253, 550, 1416, 1422, 1695, 1697
SspI AATATT 2 cut(s) 1581, 1688
SspMI CTAG 4 cut(s) 1235, 1517, 1641, 1856
TaiI ACGT 2 cut(s) 100, 1847
TaqI TCGA 6 cut(s) 384, 490, 622, 1430, 1528, 1691
TasI AATT 6 cut(s) 105, 374, 754, 1148, 1673, 2000
TatI WGTACW 3 cut(s) 1049, 1324, 2021
TauI GCSGC 1 cut(s) 1425
TfiI GAWTC 9 cut(s) 300, 422, 619, 645, 896, 1435, 1469, 1654, 1780
Tru1I TTAA 4 cut(s) 510, 672, 921, 930
Tru9I TTAA 4 cut(s) 510, 672, 921, 930
TscAI CASTG 4 cut(s) 424, 1656, 1906, 2031
TseFI GTSAC 4 cut(s) 733, 823, 1510, 1790
TseI GCWGC 5 cut(s) 314, 443, 989, 1533, 1637
Tsp45I GTSAC 4 cut(s) 733, 823, 1510, 1790
TspGWI ACGGA 2 cut(s) 454, 781
TspRI CASTG 4 cut(s) 424, 1656, 1906, 2031
VpaK11BI GGWCC 1 cut(s) 761
XapI RAATTY 1 cut(s) 1673
XceI RCATGY 1 cut(s) 1875
XmnI GAANNNNTTC 3 cut(s) 1194, 1606, 1844
XspI CTAG 4 cut(s) 1235, 1517, 1641, 1856
Zsp2I ATGCAT 2 cut(s) 133, 1877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.