Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005696

Physical Location & Seq

Genomic Coordinates Reverse (-)

82901056 .. 82911485

Gene Structure 10430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG484700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAAGGTACTCTTCAATGATACAATATACCACAACATTCATTATGGCCGTCTTTCAGCAACAAAAGAAGAGGTGTATGAAGCTGCTCGACGTGCAGCAATACATGATACTATCATGAACTTTCCCGACAGATATTCTACTGAAGTGGGGGAACGGGGGCTCAAGTTAAGTGGTGGGGAGAAGCAGCGTGTGGCACTGGCTCGTGCATTCTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTACAAGTGCACTAGATAGCACCACAGAAGCGGAAATATTTAGTGCATTGAATATCTTTTTGGTTTTGCTACTACCTCGTACTCTTGTGTCTTTCCGAATCAAGTCTCAGATAATAGTTCTGGACAATGGGCAAGTGGTTGAGCAGGGACCCCATGATGTTCTCTTGTCCAAGGCAGGAAGATATGCACAGCTCTGGGGACAGCAAAATAACACAATTGATGCACTTGATGCCACAATTGATACAAATGAGGTGAATGAACTACTCTTTAGAAGCATCATTCTAATTGCAATTGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

182

Amino Acids

20.39

Weight (kDa)

5.23

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	13 - 85	1e-10	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28620 AT4G28630 AT5G58270
fragaria_vesca	FvH4_3g41120 FvH4_3g41120 FvH4_3g41120 FvH4_3g41120
malus_domestica	MD03G1047300.v1.1 MD11G1049800.v1.1
prunus_persica	Prupe.6G038500_v2.0.a1
pyrus_communis	pycom03g03730 pycom11g04040
rosa_chinensis	RchiOBHm_Chr5g0073901 RchiOBHm_Chr5g0073961
rosa_laevigata	RLG00000036423
rosa_multiflora	Rmu_sc0000470.1_g000016 Rmu_sc0000470.1_g000034
rosa_roxburghii	Rroxscaffold_1G00007470
rosa_rugosa	Rorug05G0427200
rosa_samantha	Rh5AG484200 Rh5AG484700 Rh5BG504900 Rh5BG505300 Rh5CG528700 Rh5CG529100 Rh5DG517200
rosa_wichuraiana	Rw0G006220 Rw5G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	3 cut(s)	12, 328, 545
AgsI	TTSAA	3 cut(s)	19, 217, 298
AjiI	CACGTC	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	86, 248, 439
AluI	AGCT	3 cut(s)	86, 248, 439
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	3 cut(s)	86, 98, 187
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	73, 110, 199
BceAI	ACGGC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	3 cut(s)	87, 99, 188
BlsI	GCNGC	3 cut(s)	88, 100, 189
BmcAI	AGTACT	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	396, 397
BmsI	GCATC	3 cut(s)	457, 466, 531
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	73, 110, 199
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	2 cut(s)	408, 459
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	408, 459
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	165, 259
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	396, 397
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	417
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	20, 66
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstDEI	CTNAG	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 254, 476
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	3 cut(s)	73, 110, 199
BsuRI	GGCC	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	197
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	11, 327, 544
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	3 cut(s)	107, 118, 401
CviJI	RGCY	6 cut(s)	51, 86, 163, 203, 248, 439
CviKI_1	RGCY	6 cut(s)	51, 86, 163, 203, 248, 439
CviQI	GTAC	3 cut(s)	11, 327, 544
DdeI	CTNAG	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	20, 66
EarI	CTCTTC	2 cut(s)	20, 66
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	110, 121, 404
FaiI	YATR	8 cut(s)	31, 48, 81, 108, 119, 238, 402, 432
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	408, 459
FatI	CATG	3 cut(s)	106, 117, 400
Fnu4HI	GCNGC	3 cut(s)	87, 99, 188
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	87, 99, 188
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	87, 99, 188
HaeIII	GGCC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	110, 121, 404
HinfI	GANTC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	344, 357
Hpy188III	TCNNGA	4 cut(s)	118, 128, 214, 368
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	7 cut(s)	98, 209, 257, 293, 434, 470, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 254, 476
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	110, 121, 404
KflI	GGGWCCC	1 cut(s)	395
LpnPI	CCDG	5 cut(s)	185, 353, 377, 408, 427
Lsp1109I	GCAGC	3 cut(s)	73, 110, 199
LweI	GCATC	3 cut(s)	457, 466, 531
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	94
MboII	GAAGA	3 cut(s)	7, 83, 438
MfeI	CAATTG	3 cut(s)	462, 483, 537
MhlI	GDGCHC	2 cut(s)	165, 259
MluCI	AATT	5 cut(s)	228, 462, 483, 531, 537
MnlI	CCTC	4 cut(s)	67, 234, 333, 490
MseI	TTAA	1 cut(s)	170
MunI	CAATTG	3 cut(s)	462, 483, 537
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	95, 254, 476
NlaIII	CATG	3 cut(s)	110, 121, 404
NlaIV	GGNNCC	2 cut(s)	396, 397
PagI	TCATGA	1 cut(s)	117
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	88, 100, 189
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	396, 397
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
RsaI	GTAC	3 cut(s)	12, 328, 545
RsaNI	GTAC	3 cut(s)	11, 327, 544
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	3 cut(s)	87, 99, 188
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	165, 259
SetI	ASST	9 cut(s)	12, 78, 88, 97, 226, 250, 325, 441, 501
SfaNI	GCATC	3 cut(s)	457, 466, 531
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	228, 462, 483, 531, 537
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	285
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	91
TasI	AATT	5 cut(s)	228, 462, 483, 531, 537
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	3 cut(s)	86, 98, 187
TspDTI	ATGAA	5 cut(s)	32, 96, 134, 258, 519
TspRI	CASTG	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	395
XspI	CTAG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.