Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000470.1

Orthogroup ID

OG0005696

Physical Location & Seq

Genomic Coordinates Reverse (-)

147935 .. 150747

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000470.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtggatcttgtttgtcataagttgtcacataataagaaaagaattggttcttcatgaacaggtgtatgaagctgctcgacgtgcagcaatacatgatactatcatgaactttcccgacagatattctactgaagtgggggaacgggggctcaagtgcgatgaggtaaccattcttccaccttctagttacctctcctgcatttttagtagtttgctacttgctacagtgcgtctttgctacagtatctgtttggttttgctactacctcgtactctcgtgtctttccgaatcaagtctcagataatagttatggacaatgggcaagtggttgagcagggaccccatgatgttctcttgtccaaggcaggaagatatgcacagctctggggacagcaaaataacacaattgatgcacttgatgccacaattgatacaaataagaattcttttcgatcgctgtctaacctagcaccggcgggtatcttcgtcgggggtcgtggacaacaaagaataccagtttcagtgttgactggtggtggcagaagggcaaaccagatctctgattatgtaggtgaggcgcaggcttgtggttggcgatcgtctggtatcgacgccattgaacttggttgtggtgtgtttcgatcgatggttctaactggcacgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

223

Amino Acids

24.56

Weight (kDa)

8.51

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28620 AT4G28630 AT5G58270
fragaria_vesca	FvH4_3g41120 FvH4_3g41120 FvH4_3g41120 FvH4_3g41120
malus_domestica	MD03G1047300.v1.1 MD11G1049800.v1.1
prunus_persica	Prupe.6G038500_v2.0.a1
pyrus_communis	pycom03g03730 pycom11g04040
rosa_chinensis	RchiOBHm_Chr5g0073901 RchiOBHm_Chr5g0073961
rosa_laevigata	RLG00000036423
rosa_multiflora	Rmu_sc0000470.1_g000016 Rmu_sc0000470.1_g000034
rosa_roxburghii	Rroxscaffold_1G00007470
rosa_rugosa	Rorug05G0427200
rosa_samantha	Rh5AG484200 Rh5AG484700 Rh5BG504900 Rh5BG505300 Rh5CG528700 Rh5CG529100 Rh5DG517200
rosa_wichuraiana	Rw0G006220 Rw5G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	623
AjiI	CACGTC	1 cut(s)	83
AluBI	AGCT	2 cut(s)	74, 385
AluI	AGCT	2 cut(s)	74, 385
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	74, 86
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BauI	CACGAG	2 cut(s)	278, 664
BbvI	GCAGC	2 cut(s)	61, 98
BccI	CCATC	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	186, 470
BfmI	CTRYAG	2 cut(s)	225, 241
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	2 cut(s)	75, 87
BlsI	GCNGC	2 cut(s)	76, 88
Bme18I	GGWCC	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	342, 343
BmsI	GCATC	2 cut(s)	403, 412
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	518, 538, 664
BseCI	ATCGAT	1 cut(s)	647
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	518, 538, 664
BseXI	GCAGC	2 cut(s)	61, 98
BsgI	GTGCAG	1 cut(s)	105
Bsh1285I	CGRYCG	3 cut(s)	458, 602, 647
BshVI	ATCGAT	1 cut(s)	647
BsiEI	CGRYCG	3 cut(s)	458, 602, 647
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	2 cut(s)	354, 405
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	354, 405
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	6, 455, 558, 599, 644
BspACI	CCGC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	647
BspHI	TCATGA	2 cut(s)	55, 105
BspLI	GGNNCC	2 cut(s)	342, 343
BspPI	GGATC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	518, 538, 664
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	5 cut(s)	6, 455, 558, 599, 644
BssNI	GRCGYC	1 cut(s)	615
BssSI	CACGAG	2 cut(s)	278, 664
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	2 cut(s)	278, 664
Bst4CI	ACNGT	2 cut(s)	229, 245
BstACI	GRCGYC	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	5 cut(s)	9, 458, 561, 602, 647
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	5 cut(s)	6, 455, 558, 599, 644
BstMCI	CGRYCG	3 cut(s)	458, 602, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 422
BstPI	GGTNACC	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	225, 241
BstV1I	GCAGC	2 cut(s)	61, 98
BstX2I	RGATCY	2 cut(s)	6, 558
BstYI	RGATCY	2 cut(s)	6, 558
Bsu15I	ATCGAT	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	234, 531
Cac8I	GCNNGC	1 cut(s)	585
CaiI	CAGNNNCTG	1 cut(s)	249
CciI	TCATGA	2 cut(s)	55, 105
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	647
CseI	GACGC	2 cut(s)	221, 623
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	4 cut(s)	56, 95, 106, 347
CviJI	RGCY	4 cut(s)	74, 151, 385, 587
CviKI_1	RGCY	4 cut(s)	74, 151, 385, 587
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	5 cut(s)	8, 457, 560, 601, 646
DpnII	GATC	5 cut(s)	6, 455, 558, 599, 644
DraIII	CACNNNGTG	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	59, 98, 109, 350
FaqI	GGGAC	2 cut(s)	354, 405
FatI	CATG	4 cut(s)	55, 94, 105, 346
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	75, 87
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	75, 87
FspBI	CTAG	2 cut(s)	186, 470
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	2 cut(s)	75, 87
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	2 cut(s)	221, 623
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	4 cut(s)	59, 98, 109, 350
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	503, 531
Hpy188I	TCNGA	3 cut(s)	290, 303, 565
Hpy188III	TCNNGA	3 cut(s)	56, 106, 116
Hpy8I	GTNNAC	2 cut(s)	503, 531
Hpy99I	CGWCG	3 cut(s)	84, 494, 617
HpyAV	CCTTC	2 cut(s)	192, 540
HpyCH4III	ACNGT	2 cut(s)	229, 245
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	86, 201, 380, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 422
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	4 cut(s)	59, 98, 109, 350
HspAI	GCGC	1 cut(s)	581
KflI	GGGWCCC	1 cut(s)	341
Kzo9I	GATC	5 cut(s)	6, 455, 558, 599, 644
Lsp1109I	GCAGC	2 cut(s)	61, 98
LweI	GCATC	2 cut(s)	403, 412
MaeI	CTAG	2 cut(s)	186, 470
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	3 cut(s)	26, 166, 188
MalI	GATC	5 cut(s)	8, 457, 560, 601, 646
MboI	GATC	5 cut(s)	6, 455, 558, 599, 644
MboII	GAAGA	4 cut(s)	44, 167, 384, 478
MfeI	CAATTG	2 cut(s)	408, 429
MflI	RGATCY	2 cut(s)	6, 558
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	4 cut(s)	44, 408, 429, 445
MnlI	CCTC	5 cut(s)	157, 203, 279, 571, 660
MroXI	GAANNNNTTC	1 cut(s)	48
MspI	CCGG	1 cut(s)	476
MunI	CAATTG	2 cut(s)	408, 429
MwoI	GCNNNNNNNGC	2 cut(s)	83, 422
NdeII	GATC	5 cut(s)	6, 455, 558, 599, 644
NlaIII	CATG	4 cut(s)	59, 98, 109, 350
NlaIV	GGNNCC	2 cut(s)	342, 343
NmuCI	GTSAC	1 cut(s)	26
PagI	TCATGA	2 cut(s)	55, 105
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	76, 88
Ple19I	CGATCG	3 cut(s)	458, 602, 647
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspEI	GGTNACC	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	342, 343
PspPI	GGNCC	1 cut(s)	341
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	6, 558
PvuI	CGATCG	3 cut(s)	458, 602, 647
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	75, 87
Sau3AI	GATC	5 cut(s)	6, 455, 558, 599, 644
Sau96I	GGNCC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	403, 412
SfcI	CTRYAG	2 cut(s)	225, 241
SgrAI	CRCCGGYG	1 cut(s)	475
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	44, 408, 429, 445
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	2 cut(s)	186, 470
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	229, 245
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	79, 454, 612, 643, 647
TasI	AATT	4 cut(s)	44, 408, 429, 445
TfiI	GAWTC	1 cut(s)	291
TscAI	CASTG	2 cut(s)	234, 531
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	74, 86
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	4 cut(s)	44, 72, 84, 122
TspRI	CASTG	2 cut(s)	234, 531
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	186, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.