Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00242

Orthogroup ID

OG0005696

Physical Location & Seq

Genomic Coordinates Reverse (-)

14597 .. 16671

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTATTACAATATGAATTTTACAATGGTGGGGAGAAGCAGCGTGTGGCACTGGCTCGTGCATTCTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTAGAAGTGCACTAGATAGCACCACAGAAGCGGAAATATTTAGTGCATTGAAGTCCTTGGCAACCAACCGAACTTTTCTGGACAATGGGCAAGTGGTTGAGCTGGGACCCCATGATGTTCTCTTGTCCAAGGCAGGAAGATATGCACAGCTCTGGGGACAGCAAAATAACACAATTGATGCACTTGATGCCACAATTGATACAAATGAGGTGAATGAACAACTCTTTAGAAGCATCATTCTAATTGCAATTGGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

4.73

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	10 - 34	1e-05	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28620 AT4G28630 AT5G58270
fragaria_vesca	FvH4_3g41120 FvH4_3g41120 FvH4_3g41120 FvH4_3g41120
malus_domestica	MD03G1047300.v1.1 MD11G1049800.v1.1
prunus_persica	Prupe.6G038500_v2.0.a1
pyrus_communis	pycom03g03730 pycom11g04040
rosa_chinensis	RchiOBHm_Chr5g0073901 RchiOBHm_Chr5g0073961
rosa_laevigata	RLG00000036423
rosa_multiflora	Rmu_sc0000470.1_g000016 Rmu_sc0000470.1_g000034
rosa_roxburghii	Rroxscaffold_1G00007470
rosa_rugosa	Rorug05G0427200
rosa_samantha	Rh5AG484200 Rh5AG484700 Rh5BG504900 Rh5BG505300 Rh5CG528700 Rh5CG529100 Rh5DG517200
rosa_wichuraiana	Rw0G006220 Rw5G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	70, 151
AluBI	AGCT	3 cut(s)	101, 202, 250
AluI	AGCT	3 cut(s)	101, 202, 250
Alw21I	GWGCWC	1 cut(s)	112
Alw44I	GTGCAC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	102, 113
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	207, 208
BmsI	GCATC	3 cut(s)	268, 277, 342
BsaJI	CCNNGG	2 cut(s)	156, 228
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	156, 228
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	219, 270
BsmFI	GGGAC	2 cut(s)	219, 270
BsmI	GAATGC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	207, 208
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	156, 228
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	156, 228
Bst2BI	CACGAG	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 287
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	56, 101, 202, 250
CviKI_1	RGCY	4 cut(s)	56, 101, 202, 250
CviQI	GTAC	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	156, 228
Eco47I	GGWCC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	156, 228
ErhI	CCWWGG	2 cut(s)	156, 228
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	15, 91, 213, 243
FaqI	GGGAC	2 cut(s)	219, 270
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	102, 113
GluI	GCNGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	67, 179
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4V	TGCA	6 cut(s)	62, 110, 146, 245, 281, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 287
Hsp92II	CATG	1 cut(s)	215
KflI	GGGWCCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	38, 164, 188, 219, 238
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	3 cut(s)	268, 277, 342
MaeI	CTAG	2 cut(s)	102, 113
MboII	GAAGA	1 cut(s)	249
MfeI	CAATTG	3 cut(s)	273, 294, 348
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	6 cut(s)	17, 81, 273, 294, 342, 348
MnlI	CCTC	2 cut(s)	87, 301
MunI	CAATTG	3 cut(s)	273, 294, 348
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	107, 287
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	207, 208
PctI	GAATGC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	207, 208
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	5 cut(s)	79, 103, 204, 252, 312
SfaNI	GCATC	3 cut(s)	268, 277, 342
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	6 cut(s)	17, 81, 273, 294, 342, 348
SsiI	CCGC	1 cut(s)	131
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	102, 113
StyI	CCWWGG	2 cut(s)	156, 228
TasI	AATT	6 cut(s)	17, 81, 273, 294, 342, 348
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	30, 111, 330
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	2 cut(s)	102, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.