Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005696

Physical Location & Seq

Genomic Coordinates Forward (+)

9555076 .. 9562524

Gene Structure 7449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTATTCAATGTTGTACCCACCATTTTAGAGATATCTATGGTTTCAGGTATACTGGCTTACAAATTTGGAGCACCTTTTGCATGGATAACATCGCTATCAGTTGCTGCATATATTGCATTTACATTGACTGTTACACAGTGGAGGACGAAGTTCAGGAAGGCCATGAATAAGGCCGATAATGATGCTAGTACGAGGGCAATTGATTCACTTATTAATTATGAGGTCATGGTGAATGGACTTCTATTCCAGCTATCACTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACCATACAGAGCCTTGTTGACATGAAATCCATGTTTCAGTTACTGGAGGAAAGGGCTGAAATTAGAGACAAAGATGACGCAAAGCCTCTGCACCTATGCGGGGGGAGCATTCAGTTTGACAACGTGCATTTCAGTTACCTAACGGAAAGAAAGATTCTCGATGGGATATCATTTCTTGTACCTGCTGGAAAGAGTGTGGCTATTGTTGGAACCAGCGGTAGTGGAAAGTCAACCATTCTCAGATTGCTGTTCAGGTTTTTTGACAGCCATTCTGGAAGTGTAAGGATAGACGGTCAAGATATTCGAGATGTGACACTTGAGAGTTTGCGGAACTGTATTGGAGTTGTGCCGCAAGATACAGTACTTTTCAATGATACAATATACCACAACATTCATTATGGCCGTCTGTCAGCAACAAAAGAAGAGGTGTATGAAGCTGCTCGACGTGCAGCAATACATGATACTATCATGAACTTTCCCGACAGATATTCTACTGAAGTGGGGGAACGGGGGCTCAAGTTAAGTGGTGGGGAGAAGCAGCGTGTGGCACTGGCTCGTGCTTTCTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTACAAGTGCACTAGATAGCACCACAGAAGCAGAAATATTAAGTGCATTGAAGTCCTTGGCAACCAACCGAACTTCAGTTTTCATTGCTCATAGGCTGACTACTGCAATGCAGTGCGATGAGATAATAGTTCTGGAGAATGGGCAAGTGGTTGAGCAGGGACCCCATGATGTTCTCTTGTCTAAGGCAGGAAGGTATGCACAGCTCTGGGGACAGCAAAATAACACAGTTGATGCACTTGATGCCACCATCAAAACAGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

385

Amino Acids

42.55

Weight (kDa)

6.1

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	151 - 300	1.8e-32	ABC transporter
SMC_N	PF02463	163 - 342	4.3e-07	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28620 AT4G28630 AT5G58270
fragaria_vesca	FvH4_3g41120 FvH4_3g41120 FvH4_3g41120 FvH4_3g41120
malus_domestica	MD03G1047300.v1.1 MD11G1049800.v1.1
prunus_persica	Prupe.6G038500_v2.0.a1
pyrus_communis	pycom03g03730 pycom11g04040
rosa_chinensis	RchiOBHm_Chr5g0073901 RchiOBHm_Chr5g0073961
rosa_laevigata	RLG00000036423
rosa_multiflora	Rmu_sc0000470.1_g000016 Rmu_sc0000470.1_g000034
rosa_roxburghii	Rroxscaffold_1G00007470
rosa_rugosa	Rorug05G0427200
rosa_samantha	Rh5AG484200 Rh5AG484700 Rh5BG504900 Rh5BG505300 Rh5CG528700 Rh5CG529100 Rh5DG517200
rosa_wichuraiana	Rw0G006220 Rw5G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	4 cut(s)	393, 510, 622, 644
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	2 cut(s)	810, 951
AfaI	GTAC	4 cut(s)	18, 193, 474, 657
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	10, 664, 862, 943
AjiI	CACGTC	1 cut(s)	740
AluBI	AGCT	4 cut(s)	253, 731, 893, 1096
AluI	AGCT	4 cut(s)	253, 731, 893, 1096
Alw21I	GWGCWC	2 cut(s)	76, 904
Alw26I	GTCTC	2 cut(s)	287, 354
Alw44I	GTGCAC	1 cut(s)	900
AlwNI	CAGNNNCTG	2 cut(s)	107, 337
AoxI	GGCC	3 cut(s)	162, 174, 694
ApaLI	GTGCAC	1 cut(s)	900
ApeKI	GCWGC	4 cut(s)	107, 731, 743, 832
ApoI	RAATTY	1 cut(s)	65
AseI	ATTAAT	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	1052
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	1052
BaeGI	GKGCMC	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	810
BauI	CACGAG	1 cut(s)	849
Bbv12I	GWGCWC	2 cut(s)	76, 904
BbvI	GCAGC	4 cut(s)	94, 718, 755, 844
BccI	CCATC	2 cut(s)	449, 1148
BceAI	ACGGC	1 cut(s)	681
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	287, 354
BfaI	CTAG	2 cut(s)	189, 905
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	5 cut(s)	108, 644, 732, 744, 833
BlsI	GCNGC	5 cut(s)	109, 645, 733, 745, 834
BmcAI	AGTACT	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	1052
BmgBI	CACGTC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	1052
BmiI	GGNNCC	3 cut(s)	505, 1053, 1054
BmsI	GCATC	3 cut(s)	175, 1114, 1123
BpmI	CTGGAG	2 cut(s)	359, 1046
BpuEI	CTTGAG	2 cut(s)	632, 794
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	274, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	60, 342, 849
Bse3DI	GCAATG	2 cut(s)	975, 1005
BseDI	CCNNGG	2 cut(s)	274, 948
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	2 cut(s)	975, 1005
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	3 cut(s)	60, 342, 849
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	94, 718, 755, 844
BsgI	GTGCAG	2 cut(s)	368, 762
BshFI	GGCC	3 cut(s)	164, 176, 696
BsiHKAI	GWGCWC	2 cut(s)	76, 904
BslFI	GGGAC	2 cut(s)	1065, 1116
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	287, 354
BsmFI	GGGAC	2 cut(s)	1065, 1116
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	164, 176, 696
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	76, 810, 904
BspACI	CCGC	4 cut(s)	393, 510, 622, 644
BspANI	GGCC	3 cut(s)	164, 176, 696
BspCNI	CTCAG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	762
BspLI	GGNNCC	3 cut(s)	505, 1053, 1054
BspMI	ACCTGC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	975, 1005
BsrI	ACTGG	3 cut(s)	60, 342, 849
BssECI	CCNNGG	2 cut(s)	274, 948
BssNAI	GTATAC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	2 cut(s)	274, 948
Bst1107I	GTATAC	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	6 cut(s)	133, 141, 587, 629, 655, 1120
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	3 cut(s)	80, 116, 1133
BstDEI	CTNAG	2 cut(s)	533, 1074
BstMAI	GTCTC	2 cut(s)	287, 354
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 116, 399, 740, 899, 1133
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	94, 718, 755, 844
BstZ17I	GTATAC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	164, 176, 696
BtgZI	GCGATG	2 cut(s)	78, 1023
BtrI	CACGTC	1 cut(s)	740
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	3 cut(s)	146, 842, 1010
BveI	ACCTGC	1 cut(s)	484
CaiI	CAGNNNCTG	2 cut(s)	107, 337
CciI	TCATGA	1 cut(s)	762
Cfr13I	GGNCC	1 cut(s)	1052
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	4 cut(s)	17, 192, 473, 656
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	8 cut(s)	84, 166, 229, 316, 325, 752, 763, 1058
CviQI	GTAC	4 cut(s)	17, 192, 473, 656
DdeI	CTNAG	2 cut(s)	533, 1074
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	274, 948
Eco24I	GRGCYC	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	36, 462
Eco47I	GGWCC	1 cut(s)	1052
Eco57I	CTGAAG	2 cut(s)	810, 951
EcoO109I	RGGNCCY	1 cut(s)	1052
EcoRV	GATATC	2 cut(s)	36, 462
EcoT14I	CCWWGG	2 cut(s)	274, 948
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	274, 948
FaeI	CATG	8 cut(s)	87, 169, 232, 319, 328, 755, 766, 1061
FaqI	GGGAC	2 cut(s)	1065, 1116
FatI	CATG	8 cut(s)	83, 165, 228, 315, 324, 751, 762, 1057
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	108, 644, 732, 744, 833
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	5 cut(s)	108, 644, 732, 744, 833
FspBI	CTAG	2 cut(s)	189, 905
GluI	GCNGC	5 cut(s)	108, 644, 732, 744, 833
GsuI	CTGGAG	2 cut(s)	359, 1046
HaeIII	GGCC	3 cut(s)	164, 176, 696
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	87, 169, 232, 319, 328, 755, 766, 1061
HincII	GTYRAC	2 cut(s)	313, 525
HindII	GTYRAC	2 cut(s)	313, 525
HinfI	GANTC	2 cut(s)	206, 448
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	4 cut(s)	53, 313, 525, 902
Hpy188I	TCNGA	1 cut(s)	536
Hpy8I	GTNNAC	4 cut(s)	53, 313, 525, 902
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	154, 1077
HpyCH4III	ACNGT	6 cut(s)	133, 141, 587, 629, 655, 1120
HpyCH4IV	ACGT	2 cut(s)	417, 739
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 116, 399, 740, 899, 1133
HpyF3I	CTNAG	2 cut(s)	533, 1074
HpySE526I	ACGT	2 cut(s)	417, 739
Hsp92II	CATG	8 cut(s)	87, 169, 232, 319, 328, 755, 766, 1061
KflI	GGGWCCC	1 cut(s)	1052
LmnI	GCTCC	2 cut(s)	71, 399
Lsp1109I	GCAGC	4 cut(s)	94, 718, 755, 844
LweI	GCATC	3 cut(s)	175, 1114, 1123
MaeI	CTAG	2 cut(s)	189, 905
MaeII	ACGT	2 cut(s)	417, 739
MaeIII	GTNAC	4 cut(s)	133, 333, 428, 604
MboII	GAAGA	1 cut(s)	728
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	3 cut(s)	76, 810, 904
MluCI	AATT	6 cut(s)	65, 201, 217, 268, 354, 873
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	138, 189, 217, 334, 390, 712, 879
MseI	TTAA	3 cut(s)	216, 815, 932
MspA1I	CMGCKG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	6 cut(s)	80, 116, 399, 740, 899, 1133
NlaIII	CATG	8 cut(s)	87, 169, 232, 319, 328, 755, 766, 1061
NlaIV	GGNNCC	3 cut(s)	505, 1053, 1054
NmuCI	GTSAC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	762
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	206, 448
PkrI	GCNGC	5 cut(s)	109, 645, 733, 745, 834
PpuMI	RGGWCCY	1 cut(s)	1052
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	1052
PspN4I	GGNNCC	3 cut(s)	505, 1053, 1054
PspPI	GGNCC	1 cut(s)	1052
PspPPI	RGGWCCY	1 cut(s)	1052
PstNI	CAGNNNCTG	2 cut(s)	107, 337
RsaI	GTAC	4 cut(s)	18, 193, 474, 657
RsaNI	GTAC	4 cut(s)	17, 192, 473, 656
SaqAI	TTAA	3 cut(s)	216, 815, 932
SatI	GCNGC	5 cut(s)	108, 644, 732, 744, 833
Sau96I	GGNCC	1 cut(s)	1052
ScaI	AGTACT	1 cut(s)	657
SduI	GDGCHC	3 cut(s)	76, 810, 904
SfaNI	GCATC	3 cut(s)	175, 1114, 1123
SinI	GGWCC	1 cut(s)	1052
SmlI	CTYRAG	2 cut(s)	611, 809
SmoI	CTYRAG	2 cut(s)	611, 809
Sse9I	AATT	6 cut(s)	65, 201, 217, 268, 354, 873
SsiI	CCGC	4 cut(s)	393, 510, 622, 644
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	2 cut(s)	189, 905
StyI	CCWWGG	2 cut(s)	274, 948
TaaI	ACNGT	6 cut(s)	133, 141, 587, 629, 655, 1120
TaiI	ACGT	2 cut(s)	420, 742
TaqI	TCGA	3 cut(s)	453, 598, 736
TasI	AATT	6 cut(s)	65, 201, 217, 268, 354, 873
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	206, 448
Tru1I	TTAA	3 cut(s)	216, 815, 932
Tru9I	TTAA	3 cut(s)	216, 815, 932
TscAI	CASTG	3 cut(s)	146, 849, 1010
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	107, 731, 743, 832
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	182, 332, 677, 741, 779, 903, 964
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	3 cut(s)	146, 849, 1010
VneI	GTGCAC	1 cut(s)	900
VpaK11BI	GGWCC	1 cut(s)	1052
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	189, 905
ZrmI	AGTACT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.