Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005696

Physical Location & Seq

Genomic Coordinates Forward (+)

59401454 .. 59406025

Gene Structure 4572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCAATCGTCTCCGAGCGCCTCCGCCGATGCTTCACCGCCTGCGACACCGTCAACTGCACCGGCTCTAGCTCCGACAATCCCAATGCCGGCGACCGAGCCGAGGACCACAAGAAGGACCACCACCGGAAAATCATCACCAACAACTCTTACGCTGGAGACGACGGTATCTACCCGACCCGGTCAGGGCTTCGCCATGTTAGAATTCAGATCTCCATGGTTGATTCCTATATTCGAGTCCAGTTTGGCAGGGTTGCAGCTTTGGCACAGTTTCGAGCCAGGCCGGGGATTGTAATTTCACTTTGTTGGAAGATGATGAGAGGTTTTGCTCTGATCAAGCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

9.87

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28620 AT4G28630 AT5G58270
fragaria_vesca	FvH4_3g41120 FvH4_3g41120 FvH4_3g41120 FvH4_3g41120
malus_domestica	MD03G1047300.v1.1 MD11G1049800.v1.1
prunus_persica	Prupe.6G038500_v2.0.a1
pyrus_communis	pycom03g03730 pycom11g04040
rosa_chinensis	RchiOBHm_Chr5g0073901 RchiOBHm_Chr5g0073961
rosa_laevigata	RLG00000036423
rosa_multiflora	Rmu_sc0000470.1_g000016 Rmu_sc0000470.1_g000034
rosa_roxburghii	Rroxscaffold_1G00007470
rosa_rugosa	Rorug05G0427200
rosa_samantha	Rh5AG484200 Rh5AG484700 Rh5BG504900 Rh5BG505300 Rh5CG528700 Rh5CG529100 Rh5DG517200
rosa_wichuraiana	Rw0G006220 Rw5G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 39
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	5 cut(s)	89, 103, 115, 186, 285
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	3 cut(s)	72, 260, 340
AluI	AGCT	3 cut(s)	72, 260, 340
Alw26I	GTCTC	2 cut(s)	16, 153
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	106, 118
AsuC2I	CCSGG	2 cut(s)	181, 285
AsuHPI	GGTGA	2 cut(s)	28, 130
AvaII	GGWCC	2 cut(s)	106, 118
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BbvI	GCAGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	2 cut(s)	181, 285
BcoDI	GTCTC	2 cut(s)	16, 153
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	22
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	3 cut(s)	181, 280, 285
Bme18I	GGWCC	2 cut(s)	106, 118
BmgT120I	GGNCC	2 cut(s)	106, 118
BmrFI	CCNGG	3 cut(s)	181, 280, 285
BmsI	GCATC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	181, 285
BsaJI	CCNNGG	3 cut(s)	102, 216, 284
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 103, 115, 186, 285
Bse118I	RCCGGY	2 cut(s)	62, 89
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	102, 216, 284
BseLI	CCNNNNNNNGG	5 cut(s)	89, 103, 115, 186, 285
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	5 cut(s)	63, 90, 127, 181, 284
BslI	CCNNNNNNNGG	5 cut(s)	89, 103, 115, 186, 285
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	210, 333
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	2 cut(s)	25, 39
BspANI	GGCC	1 cut(s)	283
BsrFI	RCCGGY	2 cut(s)	62, 89
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	2 cut(s)	62, 89
BssECI	CCNNGG	3 cut(s)	102, 216, 284
BssMI	GATC	2 cut(s)	210, 333
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	52, 167, 270
BstC8I	GCNNGC	3 cut(s)	43, 91, 342
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	213, 336
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	2 cut(s)	210, 333
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	179, 278, 283
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	43, 91, 342
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	2 cut(s)	62, 89
Cfr13I	GGNCC	2 cut(s)	106, 118
CviAII	CATG	2 cut(s)	197, 217
CviJI	RGCY	8 cut(s)	66, 72, 101, 190, 260, 278, 283, 340
CviKI_1	RGCY	8 cut(s)	66, 72, 101, 190, 260, 278, 283, 340
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	212, 335
DpnII	GATC	2 cut(s)	210, 333
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	106, 118
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	2 cut(s)	200, 220
FaiI	YATR	3 cut(s)	198, 218, 231
FatI	CATG	2 cut(s)	196, 216
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	5 cut(s)	63, 90, 127, 181, 284
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	200, 220
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	224, 237
HpaII	CCGG	5 cut(s)	63, 90, 127, 181, 284
HphI	GGTGA	2 cut(s)	28, 130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	4 cut(s)	16, 76, 210, 333
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	52, 167, 270
HpyCH4V	TGCA	2 cut(s)	60, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	200, 220
HspAI	GCGC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	210, 333
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	69
MalI	GATC	2 cut(s)	212, 335
MboI	GATC	2 cut(s)	210, 333
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	2 cut(s)	204, 294
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	99, 287
MnlI	CCTC	3 cut(s)	32, 97, 314
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	5 cut(s)	63, 90, 127, 181, 284
MspR9I	CCNGG	3 cut(s)	181, 280, 285
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	263
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	181, 285
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	210, 333
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	200, 220
NmeAIII	GCCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	224
PflFI	GACNNNGTC	2 cut(s)	50, 181
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	106, 118
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	2 cut(s)	50, 181
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	210, 333
Sau96I	GGNCC	2 cut(s)	106, 118
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	3 cut(s)	181, 280, 285
SetI	ASST	4 cut(s)	74, 262, 325, 342
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	2 cut(s)	106, 118
Sse9I	AATT	2 cut(s)	204, 294
SsiI	CCGC	2 cut(s)	25, 39
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	179, 278, 283
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	52, 167, 270
TaqI	TCGA	2 cut(s)	235, 274
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	204, 294
TfiI	GAWTC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	257
Tth111I	GACNNNGTC	2 cut(s)	50, 181
VpaK11BI	GGWCC	2 cut(s)	106, 118
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.