AT4G28790

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14218214 .. 14220998
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28790.4

Sequence Viewer

Length: 1242 bp
ATGACTTGGAAACCGAAGATGCTTATATTATCCCATGATCTAATCTCACCAGAAAAATACATCATGGGTGAAGATGATATCGTGGAGCTCTTAGGGAAGAGCAGCCAAGTAGTTACAAGTAGCCAGACACAAACACCCTCTTGCGATCCTCCTCTCATTCTCCGGGGCAGCGGAAGCGGGGACGGAGAAGGAAATGGTCCTCTACCGCAGCCTCCGCCTCCCCTGTACCATCAGCAGAGTCTCTTTATCCAAGAAGACGAAATGGCTTCTTGGCTTCACCAGCCTAATCGCCAAGATTATCTCTACTCCCAACTTCTTTACTCCGGAGTAGCCTCGACTCACCCGCAAAGTTTGGCCTCCCTAGAACCACCACCACCACCTAGGGCTCAGTACATTCTGGCGGCGGATAGACCGACCGGTCATATTTTGGCCGAGAGAAGGGCGGAGAATTTTATGAATATCTCGAGGCAAAGAGGGAACATATTTCTTGGCGGTGTTGAAGCTGTACCGTCGAACTCGACCCTGTTGTCTTCAGCCACTGAATCAATACCAGCGACTCACGGCACCGAGAGTCGAGCAACAGTCACTGGCGGAGTATCTCGTACTTTTGCAGTTCCTGGTCTTGGTCCGAGGGGAAAGGCGGTGGCGATTGAGACGGCGGGAACACAATCTTGGGGGTTGTGCAAGGCCGAAACAGAGCCGGTTCAGAGACAACCAGCGACGGAGACGGATATCACCGATGAACGGAAGAGAAAAACGAGAGAGGAAACAAATGTCGAAAACCAGGGAACTGAAGAAGCTCGTGATTCGACGTCTAGTAAGAGGTCACGAGCTGCAATAATGCATAAACTCTCCGAAAGGAGACGGAGACAAAAGATTAACGAGATGATGAAGGCTTTGCAAGAACTCCTTCCTCGCTGCACAAAGACTGATAGATCTTCCATGCTGGATGATGTTATAGAGTACGTGAAATCTCTACAGAGCCAAATACAGATGTTCTCAATGGGACATGTTATGATTCCACCGATGATGTATGCGGGGAATATACAACAACAGTACATGCCCCACATGGCCATGGGTATGAATCGGCCTCCTGCATTCATACCTTTCCCTAGGCAGGCTCATATGGCGGAAGGTGTAGGTCCTGTTGATTTATTTAGAGAGAATGAAGAAACAGAGCAAGAGACAATGTCTCTTCTCCTTAGAGAAGACAAAAGAACAAAACAGAAAATGTTTTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

46.07

Weight (kDa)

6.4

Isoelectric Point (pI)

74.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 417, 526
AatII GACGTC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 563
AccIII TCCGGA 1 cut(s) 323
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 2 cut(s) 429, 1071
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 2 cut(s) 516, 813
AcyI GRCGYC 1 cut(s) 812
AfaI GTAC 6 cut(s) 227, 392, 507, 604, 965, 1058
AfiI CCNNNNNNNGG 4 cut(s) 438, 623, 744, 1117
AflIII ACRYGT 1 cut(s) 1009
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 2 cut(s) 616, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
AluBI AGCT 4 cut(s) 88, 503, 800, 833
AluI AGCT 4 cut(s) 88, 503, 800, 833
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 8 cut(s) 245, 647, 703, 719, 856, 862, 1178, 1197
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 3 cut(s) 539, 587, 617
Ama87I CYCGRG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 323
AoxI GGCC 5 cut(s) 354, 429, 687, 1071, 1088
ApeKI GCWGC 5 cut(s) 102, 168, 208, 833, 918
ApoI RAATTY 1 cut(s) 448
AsiGI ACCGGT 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 909
AspA2I CCTAGG 2 cut(s) 380, 1112
AspS9I GGNCC 3 cut(s) 197, 626, 1142
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 5 cut(s) 39, 80, 269, 332, 727
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 3 cut(s) 197, 626, 1142
AvrII CCTAGG 2 cut(s) 380, 1112
BalI TGGCCA 1 cut(s) 1073
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 2 cut(s) 90, 388
BauI CACGAG 2 cut(s) 801, 828
BbsI GAAGAC 3 cut(s) 261, 522, 1215
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 5 cut(s) 114, 180, 220, 820, 905
BccI CCATC 1 cut(s) 237
BceAI ACGGC 2 cut(s) 577, 672
BciT130I CCWGG 2 cut(s) 618, 785
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 8 cut(s) 245, 647, 703, 719, 856, 862, 1178, 1197
BfaI CTAG 4 cut(s) 362, 381, 816, 1113
BfmI CTRYAG 1 cut(s) 977
BglII AGATCT 1 cut(s) 935
BisI GCNGC 6 cut(s) 103, 169, 209, 402, 834, 919
BlnI CCTAGG 2 cut(s) 380, 1112
BlsI GCNGC 6 cut(s) 104, 170, 210, 403, 835, 920
Bme1390I CCNGG 3 cut(s) 164, 618, 785
Bme18I GGWCC 3 cut(s) 197, 626, 1142
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 3 cut(s) 197, 626, 1142
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 3 cut(s) 164, 618, 785
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 3 cut(s) 261, 522, 1215
BpuMI CCSGG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 967
BsaHI GRCGYC 1 cut(s) 812
BsaJI CCNNGG 6 cut(s) 163, 380, 629, 784, 1074, 1112
BsaWI WCCGGW 2 cut(s) 323, 416
Bsc4I CCNNNNNNNGG 4 cut(s) 438, 623, 744, 1117
Bse118I RCCGGY 2 cut(s) 416, 700
Bse1I ACTGG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 323
BseBI CCWGG 2 cut(s) 618, 785
BseDI CCNNGG 6 cut(s) 163, 380, 629, 784, 1074, 1112
BseGI GGATG 1 cut(s) 955
BseLI CCNNNNNNNGG 4 cut(s) 438, 623, 744, 1117
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 5 cut(s) 114, 180, 220, 820, 905
BsgI GTGCAG 1 cut(s) 904
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 5 cut(s) 356, 431, 689, 1073, 1090
BshNI GGYRCC 1 cut(s) 563
BshTI ACCGGT 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 4 cut(s) 163, 324, 417, 701
BslFI GGGAC 2 cut(s) 194, 1020
BslI CCNNNNNNNGG 4 cut(s) 438, 623, 744, 1117
BsmAI GTCTC 8 cut(s) 245, 647, 703, 719, 856, 862, 1178, 1197
BsmBI CGTCTC 3 cut(s) 647, 719, 856
BsmFI GGGAC 2 cut(s) 194, 1020
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 5 cut(s) 356, 431, 689, 1073, 1090
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 90, 388
Bsp13I TCCGGA 1 cut(s) 323
Bsp143I GATC 3 cut(s) 37, 145, 935
Bsp19I CCATGG 1 cut(s) 1074
BspANI GGCC 5 cut(s) 356, 431, 689, 1073, 1090
BspCNI CTCAG 1 cut(s) 400
BspEI TCCGGA 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 563
BsrFI RCCGGY 2 cut(s) 416, 700
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 2 cut(s) 416, 700
BssECI CCNNGG 6 cut(s) 163, 380, 629, 784, 1074, 1112
BssMI GATC 3 cut(s) 37, 145, 935
BssNI GRCGYC 1 cut(s) 812
BssSI CACGAG 2 cut(s) 801, 828
BssT1I CCWWGG 3 cut(s) 380, 1074, 1112
Bst2BI CACGAG 2 cut(s) 801, 828
Bst2UI CCWGG 2 cut(s) 618, 785
Bst4CI ACNGT 3 cut(s) 510, 583, 1056
Bst6I CTCTTC 3 cut(s) 92, 743, 1200
BstACI GRCGYC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 967
BstC8I GCNNGC 1 cut(s) 1119
BstDEI CTNAG 3 cut(s) 91, 387, 1202
BstDSI CCRYGG 1 cut(s) 1074
BstF5I GGATG 1 cut(s) 955
BstKTI GATC 3 cut(s) 40, 148, 938
BstMAI GTCTC 8 cut(s) 245, 647, 703, 719, 856, 862, 1178, 1197
BstMBI GATC 3 cut(s) 37, 145, 935
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 4 cut(s) 174, 214, 280, 1127
BstNI CCWGG 2 cut(s) 618, 785
BstNSI RCATGY 2 cut(s) 1013, 1063
BstSCI CCNGG 3 cut(s) 162, 616, 783
BstSFI CTRYAG 1 cut(s) 977
BstV1I GCAGC 5 cut(s) 114, 180, 220, 820, 905
BstV2I GAAGAC 3 cut(s) 261, 522, 1215
BstX2I RGATCY 1 cut(s) 935
BstYI RGATCY 1 cut(s) 935
BsuRI GGCC 5 cut(s) 356, 431, 689, 1073, 1090
BtgI CCRYGG 1 cut(s) 1074
BtsCI GGATG 1 cut(s) 955
BtsIMutI CAGTG 2 cut(s) 537, 585
Cac8I GCNNGC 1 cut(s) 1119
CaiI CAGNNNCTG 3 cut(s) 539, 587, 617
Cfr10I RCCGGY 2 cut(s) 416, 700
Cfr13I GGNCC 3 cut(s) 197, 626, 1142
Csp6I GTAC 6 cut(s) 226, 391, 506, 603, 964, 1057
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 7 cut(s) 35, 64, 943, 1010, 1060, 1069, 1075
CviQI GTAC 6 cut(s) 226, 391, 506, 603, 964, 1057
DdeI CTNAG 3 cut(s) 91, 387, 1202
DpnI GATC 3 cut(s) 39, 147, 937
DpnII GATC 3 cut(s) 37, 145, 935
DrdI GACNNNNNNGTC 2 cut(s) 417, 526
DseDI GACNNNNNNGTC 2 cut(s) 417, 526
EaeI YGGCCR 2 cut(s) 429, 1071
Eam1104I CTCTTC 3 cut(s) 92, 743, 1200
EarI CTCTTC 3 cut(s) 92, 743, 1200
EciI GGCGGA 5 cut(s) 204, 419, 458, 606, 1145
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 3 cut(s) 380, 1074, 1112
Eco24I GRGCYC 2 cut(s) 90, 388
Eco32I GATATC 2 cut(s) 79, 733
Eco47I GGWCC 3 cut(s) 197, 626, 1142
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 516, 813
Eco88I CYCGRG 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 616, 783
EcoRV GATATC 2 cut(s) 79, 733
EcoT14I CCWWGG 3 cut(s) 380, 1074, 1112
EcoT22I ATGCAT 1 cut(s) 846
EcoT38I GRGCYC 2 cut(s) 90, 388
ErhI CCWWGG 3 cut(s) 380, 1074, 1112
Esp3I CGTCTC 3 cut(s) 647, 719, 856
FaeI CATG 7 cut(s) 38, 67, 946, 1013, 1063, 1072, 1078
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FaqI GGGAC 2 cut(s) 194, 1020
FatI CATG 7 cut(s) 34, 63, 942, 1009, 1059, 1068, 1074
FauI CCCGC 4 cut(s) 170, 351, 652, 1030
FauNDI CATATG 1 cut(s) 1125
Fnu4HI GCNGC 6 cut(s) 103, 169, 209, 402, 834, 919
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 2 cut(s) 90, 388
Fsp4HI GCNGC 6 cut(s) 103, 169, 209, 402, 834, 919
FspBI CTAG 4 cut(s) 362, 381, 816, 1113
GluI GCNGC 6 cut(s) 103, 169, 209, 402, 834, 919
HaeIII GGCC 5 cut(s) 356, 431, 689, 1073, 1090
HapII CCGG 4 cut(s) 163, 324, 417, 701
Hin1I GRCGYC 1 cut(s) 812
Hin1II CATG 7 cut(s) 38, 67, 946, 1013, 1063, 1072, 1078
HinfI GANTC 8 cut(s) 238, 337, 542, 556, 571, 806, 1018, 1084
HpaII CCGG 4 cut(s) 163, 324, 417, 701
HphI GGTGA 5 cut(s) 39, 80, 269, 332, 727
Hpy188I TCNGA 3 cut(s) 630, 708, 856
Hpy188III TCNNGA 5 cut(s) 324, 463, 803, 828, 1239
Hpy99I CGWCG 3 cut(s) 514, 724, 814
HpyAV CCTTC 5 cut(s) 182, 432, 886, 920, 1127
HpyCH4III ACNGT 3 cut(s) 510, 583, 1056
HpyCH4IV ACGT 2 cut(s) 812, 966
HpyCH4V TGCA 7 cut(s) 611, 684, 836, 844, 901, 921, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 214, 280, 1127
HpyF3I CTNAG 3 cut(s) 91, 387, 1202
HpySE526I ACGT 2 cut(s) 812, 966
Hsp92I GRCGYC 1 cut(s) 812
Hsp92II CATG 7 cut(s) 38, 67, 946, 1013, 1063, 1072, 1078
Kpn2I TCCGGA 1 cut(s) 323
Kzo9I GATC 3 cut(s) 37, 145, 935
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 5 cut(s) 114, 180, 220, 820, 905
LweI GCATC 1 cut(s) 9
MaeI CTAG 4 cut(s) 362, 381, 816, 1113
MaeII ACGT 2 cut(s) 812, 966
MaeIII GTNAC 3 cut(s) 112, 583, 825
MalI GATC 3 cut(s) 39, 147, 937
MboI GATC 3 cut(s) 37, 145, 935
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 2 cut(s) 90, 388
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 4 cut(s) 247, 331, 550, 580
Mox20I TGGCCA 1 cut(s) 1073
Mph1103I ATGCAT 1 cut(s) 846
MroI TCCGGA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 909
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 2 cut(s) 1073, 1079
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 4 cut(s) 163, 324, 417, 701
MspR9I CCNGG 3 cut(s) 164, 618, 785
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 2 cut(s) 618, 785
MwoI GCNNNNNNNGC 4 cut(s) 174, 214, 280, 1127
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 1 cut(s) 1074
NdeI CATATG 1 cut(s) 1125
NdeII GATC 3 cut(s) 37, 145, 935
NlaIII CATG 7 cut(s) 38, 67, 946, 1013, 1063, 1072, 1078
NlaIV GGNNCC 1 cut(s) 565
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 583, 825
NsiI ATGCAT 1 cut(s) 846
NspI RCATGY 2 cut(s) 1013, 1063
PaeR7I CTCGAG 1 cut(s) 463
PciI ACATGT 1 cut(s) 1009
PciSI GCTCTTC 1 cut(s) 92
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 4 cut(s) 542, 806, 1018, 1084
PflFI GACNNNGTC 1 cut(s) 1189
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 6 cut(s) 104, 170, 210, 403, 835, 920
PleI GAGTC 4 cut(s) 246, 331, 550, 579
PpsI GAGTC 4 cut(s) 246, 331, 550, 579
Ppu21I YACGTR 1 cut(s) 967
PpuMI RGGWCCY 1 cut(s) 1142
PscI ACATGT 1 cut(s) 1009
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 1142
Psp6I CCWGG 2 cut(s) 616, 783
PspGI CCWGG 2 cut(s) 616, 783
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 3 cut(s) 197, 626, 1142
PspPPI RGGWCCY 1 cut(s) 1142
PstNI CAGNNNCTG 3 cut(s) 539, 587, 617
PsuI RGATCY 1 cut(s) 935
PsyI GACNNNGTC 1 cut(s) 1189
RsaI GTAC 6 cut(s) 227, 392, 507, 604, 965, 1058
RsaNI GTAC 6 cut(s) 226, 391, 506, 603, 964, 1057
RseI CAYNNNNRTG 2 cut(s) 1073, 1079
SacI GAGCTC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 6 cut(s) 103, 169, 209, 402, 834, 919
Sau3AI GATC 3 cut(s) 37, 145, 935
Sau96I GGNCC 3 cut(s) 197, 626, 1142
SchI GAGTC 4 cut(s) 247, 331, 550, 580
ScrFI CCNGG 3 cut(s) 164, 618, 785
SduI GDGCHC 2 cut(s) 90, 388
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 977
Sfr274I CTCGAG 1 cut(s) 463
SinI GGWCC 3 cut(s) 197, 626, 1142
SlaI CTCGAG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 1073, 1079
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 1 cut(s) 448
SspMI CTAG 4 cut(s) 362, 381, 816, 1113
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 162, 616, 783
StyI CCWWGG 3 cut(s) 380, 1074, 1112
TaaI ACNGT 3 cut(s) 510, 583, 1056
TaiI ACGT 2 cut(s) 815, 969
TaqI TCGA 7 cut(s) 335, 464, 512, 518, 574, 777, 809
TaqII GACCGA 1 cut(s) 427
TasI AATT 1 cut(s) 448
TatI WGTACW 2 cut(s) 390, 1056
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 4 cut(s) 542, 806, 1018, 1084
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 2 cut(s) 544, 592
TseFI GTSAC 2 cut(s) 583, 825
TseI GCWGC 5 cut(s) 102, 168, 208, 833, 918
Tsp45I GTSAC 2 cut(s) 583, 825
TspDTI ATGAA 6 cut(s) 470, 756, 905, 1090, 1097, 1182
TspGWI ACGGA 5 cut(s) 198, 737, 743, 760, 880
TspRI CASTG 2 cut(s) 544, 592
Tth111I GACNNNGTC 1 cut(s) 1189
VpaK11BI GGWCC 3 cut(s) 197, 626, 1142
XapI RAATTY 1 cut(s) 448
XceI RCATGY 2 cut(s) 1013, 1063
XhoI CTCGAG 1 cut(s) 463
XmaJI CCTAGG 2 cut(s) 380, 1112
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 4 cut(s) 362, 381, 816, 1113
ZraI GACGTC 1 cut(s) 813
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.