Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001638

Physical Location & Seq

Genomic Coordinates Reverse (-)

51280498 .. 51283536

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG287700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGTTTTCACAAATGACATATTAAGAGAAAAAATGAATTACCGCGTCCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCATCTTCTCCCCGCTCGAGAAAATCCACCATGCCAGAAGATGAGGTCATGGAACTGCTATGGCAGAACGGACAGGTGGTGATGCAGAGCCAAACCCAGAGGTCGGGACATAAGAAGTCCAAATACGACGCTGTTATTCCCGAACATACCAGACCTCCTGCAGCGCAACCGCCGCCGGTGAATCAACCTCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACCGATTCCAGAAACGCTCAATCCAACAACACCGCCGCCAACCTTCCACCGATTTCTCCGCCGCCTCCCCCTCGGCTGCCGATCCATCCTCCGCCGAGGAGGACCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAATAAGTCTCGGTATGAATCCGCGGCGGTGGGGCCGTCGGGGTCGAAGAGCGTGGATTCGAGGTTCGACGCCTCCAGCAACAATGCTAGCGGCGGCGGAAGAGGACTTGCCGCCACCGCTACGATGTCGTTCGGTGCCGCCTCCGCCTCAGCCGGGAAAGACGCCGTGACGTGCGAGACGTCGCTGACGTCGTCTACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGAAGCCGCCGCCTCCGCCTCGGCCGCCGCAGCCGCCGGTGGAGGATCGGAAGCGCAAACAGAGAGTGGCCGACGACGCCGAGTGTCAGAGCGAGGATGTGGAGTTTGAATCTGGGAGTGGAAAGAAGCAGACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCGATGGGAATGGGAATGGGCATGGGCATGGGCATGGAAATGGGAATGAGTCGGCCTATGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCGAGGTTCCCTTTGCCACCATTTCGAATGCAGACTATGCTTCCCAATGATCCTAGCAGGGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTGCGGATCCTTACCAGCAGTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

516

Amino Acids

56.99

Weight (kDa)

7.65

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	312 - 359	6.6e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	318 - 361	1.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28800 AT4G28800 AT4G28811 AT4G28815 AT4G28815
fragaria_vesca	FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790
malus_domestica	MD05G1182300.v1.1 MD10G1170600.v1.1
prunus_persica	Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1
pyrus_communis	pycom10g14700
rosa_chinensis	RchiOBHm_Chr6g0285491
rosa_laevigata	RLG00000012635
rosa_multiflora	Rmu_sc0000284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183100
rosa_rugosa	Rorug06G0174800 Rorug06G0174800 Rorug06G0174900
rosa_samantha	Rh6AG286500 Rh6BG287700 Rh6CG288800 Rh6DG281600
rosa_wichuraiana	Rw6G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1264
AatII	GACGTC	3 cut(s)	698, 707, 964
Acc36I	ACCTGC	1 cut(s)	1264
AccB1I	GGYRCC	1 cut(s)	650
AccBSI	CCGCTC	2 cut(s)	99, 732
AccI	GTMKAC	1 cut(s)	710
AccII	CGCG	3 cut(s)	45, 539, 728
AclWI	GGATC	8 cut(s)	338, 445, 816, 910, 980, 1319, 1415, 1428
AcoI	YGGCCR	3 cut(s)	309, 785, 831
AcsI	RAATTY	2 cut(s)	53, 1411
AcuI	CTGAAG	1 cut(s)	1058
AcyI	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
AfaI	GTAC	2 cut(s)	1086, 1436
AfiI	CCNNNNNNNGG	2 cut(s)	187, 669
AgsI	TTSAA	2 cut(s)	872, 1066
AhdI	GACNNNNNGTC	1 cut(s)	1033
AjiI	CACGTC	1 cut(s)	687
AjnI	CCWGG	3 cut(s)	314, 500, 1129
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
AluBI	AGCT	5 cut(s)	286, 478, 929, 1232, 1265
AluI	AGCT	5 cut(s)	286, 478, 929, 1232, 1265
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	4 cut(s)	528, 686, 711, 952
AlwI	GGATC	8 cut(s)	338, 445, 816, 910, 980, 1319, 1415, 1428
AlwNI	CAGNNNCTG	1 cut(s)	1256
Ama87I	CYCGRG	2 cut(s)	100, 897
AoxI	GGCC	5 cut(s)	309, 548, 785, 831, 1202
ApeKI	GCWGC	6 cut(s)	245, 283, 445, 735, 793, 929
ApoI	RAATTY	2 cut(s)	53, 1411
AseI	ATTAAT	1 cut(s)	1004
AspLEI	GCGC	5 cut(s)	250, 356, 728, 746, 819
AspS9I	GGNCC	7 cut(s)	471, 548, 937, 1114, 1274, 1336, 1523
AsuC2I	CCSGG	3 cut(s)	670, 898, 899
AsuHPI	GGTGA	2 cut(s)	175, 274
AsuII	TTCGAA	2 cut(s)	57, 1300
AsuNHI	GCTAGC	1 cut(s)	602
AvaI	CYCGRG	2 cut(s)	100, 897
AvaII	GGWCC	6 cut(s)	471, 937, 1114, 1274, 1336, 1523
BaeGI	GKGCMC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	1420
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	480
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	2 cut(s)	924, 1401
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	480
BbvCI	CCTCAGC	2 cut(s)	664, 1488
BbvI	GCAGC	6 cut(s)	257, 295, 432, 747, 805, 916
BccI	CCATC	2 cut(s)	462, 1147
BceAI	ACGGC	2 cut(s)	535, 665
BciT130I	CCWGG	3 cut(s)	316, 502, 1131
BcnI	CCSGG	3 cut(s)	670, 898, 899
BcoDI	GTCTC	4 cut(s)	528, 686, 711, 952
BfaI	CTAG	3 cut(s)	603, 1329, 1500
BfmI	CTRYAG	3 cut(s)	243, 320, 1466
BfoI	RGCGCY	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	1264
BglI	GCCNNNNNGGC	1 cut(s)	333
BmcAI	AGTACT	1 cut(s)	1436
Bme1390I	CCNGG	6 cut(s)	316, 502, 670, 898, 899, 1131
Bme18I	GGWCC	6 cut(s)	471, 937, 1114, 1274, 1336, 1523
BmeRI	GACNNNNNGTC	1 cut(s)	1033
BmeT110I	CYCGRG	2 cut(s)	100, 897
BmgBI	CACGTC	1 cut(s)	687
BmgT120I	GGNCC	7 cut(s)	471, 548, 937, 1114, 1274, 1336, 1523
BmiI	GGNNCC	9 cut(s)	549, 652, 1116, 1237, 1275, 1283, 1337, 1422, 1524
BmrFI	CCNGG	6 cut(s)	316, 502, 670, 898, 899, 1131
BmsI	GCATC	5 cut(s)	95, 156, 1094, 1200, 1449
BmtI	GCTAGC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	3 cut(s)	484, 574, 706
Bpu10I	CCTNAGC	3 cut(s)	664, 740, 1488
Bpu14I	TTCGAA	2 cut(s)	57, 1300
BpuMI	CCSGG	3 cut(s)	670, 898, 899
BsaHI	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
BsaJI	CCNNGG	8 cut(s)	440, 464, 537, 782, 897, 898, 1098, 1277
BsaWI	WCCGGW	1 cut(s)	713
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 932, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 669
Bse118I	RCCGGY	2 cut(s)	259, 799
Bse1I	ACTGG	1 cut(s)	1515
BseBI	CCWGG	3 cut(s)	316, 502, 1131
BseDI	CCNNGG	8 cut(s)	440, 464, 537, 782, 897, 898, 1098, 1277
BseGI	GGATG	6 cut(s)	454, 510, 865, 1051, 1109, 1464
BseLI	CCNNNNNNNGG	2 cut(s)	187, 669
BseMII	CTCAG	2 cut(s)	678, 1502
BseNI	ACTGG	1 cut(s)	1515
BseRI	GAGGAG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	785
BseXI	GCAGC	6 cut(s)	257, 295, 432, 747, 805, 916
BseYI	CCCAGC	1 cut(s)	1446
Bsh1236I	CGCG	3 cut(s)	45, 539, 728
Bsh1285I	CGRYCG	1 cut(s)	788
BshFI	GGCC	5 cut(s)	311, 550, 787, 833, 1204
BshNI	GGYRCC	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	2 cut(s)	100, 897
BsiSI	CCGG	6 cut(s)	83, 260, 669, 714, 800, 898
BslFI	GGGAC	6 cut(s)	32, 204, 1100, 1287, 1393, 1536
BslI	CCNNNNNNNGG	2 cut(s)	187, 669
BsmAI	GTCTC	4 cut(s)	528, 686, 711, 952
BsmBI	CGTCTC	2 cut(s)	686, 952
BsmFI	GGGAC	6 cut(s)	32, 204, 1100, 1287, 1393, 1536
BsmI	GAATGC	1 cut(s)	1308
BsnI	GGCC	5 cut(s)	311, 550, 787, 833, 1204
BsoBI	CYCGRG	2 cut(s)	100, 897
Bsp119I	TTCGAA	2 cut(s)	57, 1300
Bsp1286I	GDGCHC	2 cut(s)	329, 480
Bsp143I	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
Bsp19I	CCATGG	1 cut(s)	1098
BspANI	GGCC	5 cut(s)	311, 550, 787, 833, 1204
BspCNI	CTCAG	2 cut(s)	677, 1501
BspFNI	CGCG	3 cut(s)	45, 539, 728
BspLI	GGNNCC	9 cut(s)	549, 652, 1116, 1237, 1275, 1283, 1337, 1422, 1524
BspMAI	CTGCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	1264
BspOI	GCTAGC	1 cut(s)	606
BspPI	GGATC	8 cut(s)	338, 445, 816, 910, 980, 1319, 1415, 1428
BspQI	GCTCTTC	1 cut(s)	557
BspT104I	TTCGAA	2 cut(s)	57, 1300
BspT107I	GGYRCC	1 cut(s)	650
BsrBI	CCGCTC	2 cut(s)	99, 732
BsrFI	RCCGGY	2 cut(s)	259, 799
BsrI	ACTGG	1 cut(s)	1515
BssAI	RCCGGY	2 cut(s)	259, 799
BssECI	CCNNGG	8 cut(s)	440, 464, 537, 782, 897, 898, 1098, 1277
BssMI	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
BssNI	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
BssSI	CACGAG	2 cut(s)	924, 1401
BssT1I	CCWWGG	1 cut(s)	1098
Bst2BI	CACGAG	2 cut(s)	924, 1401
Bst2UI	CCWGG	3 cut(s)	316, 502, 1131
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	557, 610
BstACI	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
BstAPI	GCANNNNNTGC	2 cut(s)	1147, 1312
BstBI	TTCGAA	2 cut(s)	57, 1300
BstC8I	GCNNGC	3 cut(s)	604, 730, 1505
BstDEI	CTNAG	4 cut(s)	664, 740, 915, 1488
BstDSI	CCRYGG	2 cut(s)	537, 1098
BstF5I	GGATG	6 cut(s)	454, 510, 865, 1051, 1109, 1464
BstFNI	CGCG	3 cut(s)	45, 539, 728
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	5 cut(s)	250, 356, 728, 746, 819
BstKTI	GATC	8 cut(s)	346, 453, 811, 905, 923, 975, 1327, 1423
BstMAI	GTCTC	4 cut(s)	528, 686, 711, 952
BstMBI	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
BstMCI	CGRYCG	1 cut(s)	788
BstNI	CCWGG	3 cut(s)	316, 502, 1131
BstSCI	CCNGG	6 cut(s)	314, 500, 668, 896, 897, 1129
BstSFI	CTRYAG	3 cut(s)	243, 320, 1466
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	3 cut(s)	45, 539, 728
BstV1I	GCAGC	6 cut(s)	257, 295, 432, 747, 805, 916
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	1420
BstYI	RGATCY	1 cut(s)	1420
BstZI	CGGCCG	1 cut(s)	785
BsuRI	GGCC	5 cut(s)	311, 550, 787, 833, 1204
BtgI	CCRYGG	2 cut(s)	537, 1098
BtrI	CACGTC	1 cut(s)	687
BtsCI	GGATG	6 cut(s)	454, 510, 865, 1051, 1109, 1464
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	1 cut(s)	1264
Cac8I	GCNNGC	3 cut(s)	604, 730, 1505
CaiI	CAGNNNCTG	1 cut(s)	1256
CfoI	GCGC	5 cut(s)	250, 356, 728, 746, 819
Cfr10I	RCCGGY	2 cut(s)	259, 799
Cfr13I	GGNCC	7 cut(s)	471, 548, 937, 1114, 1274, 1336, 1523
Cfr42I	CCGCGG	1 cut(s)	540
Cfr9I	CCCGGG	1 cut(s)	897
CseI	GACGC	6 cut(s)	34, 221, 593, 686, 848, 1023
Csp6I	GTAC	2 cut(s)	1085, 1435
CviAII	CATG	9 cut(s)	115, 133, 1099, 1111, 1171, 1177, 1183, 1243, 1483
CviQI	GTAC	2 cut(s)	1085, 1435
DdeI	CTNAG	4 cut(s)	664, 740, 915, 1488
DpnI	GATC	8 cut(s)	345, 452, 810, 904, 922, 974, 1326, 1422
DpnII	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
DriI	GACNNNNNGTC	1 cut(s)	1033
EaeI	YGGCCR	3 cut(s)	309, 785, 831
EagI	CGGCCG	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	557, 610
Eam1105I	GACNNNNNGTC	1 cut(s)	1033
EarI	CTCTTC	2 cut(s)	557, 610
EciI	GGCGGA	5 cut(s)	417, 450, 627, 649, 768
Ecl136II	GAGCTC	1 cut(s)	478
EclXI	CGGCCG	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	1098
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	6 cut(s)	471, 937, 1114, 1274, 1336, 1523
Eco52I	CGGCCG	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	1058
Eco88I	CYCGRG	2 cut(s)	100, 897
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	1523
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	3 cut(s)	314, 500, 1129
EcoT14I	CCWWGG	1 cut(s)	1098
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	1098
Esp3I	CGTCTC	2 cut(s)	686, 952
FaeI	CATG	9 cut(s)	118, 136, 1102, 1114, 1174, 1180, 1186, 1246, 1486
FaqI	GGGAC	6 cut(s)	32, 204, 1100, 1287, 1393, 1536
FatI	CATG	9 cut(s)	114, 132, 1098, 1110, 1170, 1176, 1182, 1242, 1482
FauI	CCCGC	2 cut(s)	104, 288
FauNDI	CATATG	2 cut(s)	1269, 1362
FblI	GTMKAC	1 cut(s)	710
FokI	GGATG	6 cut(s)	441, 517, 872, 1058, 1116, 1471
FriOI	GRGCYC	1 cut(s)	480
FspBI	CTAG	3 cut(s)	603, 1329, 1500
GlaI	GCGC	5 cut(s)	249, 355, 727, 745, 818
GsaI	CCCAGC	1 cut(s)	1450
GsuI	CTGGAG	3 cut(s)	484, 574, 706
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	5 cut(s)	311, 550, 787, 833, 1204
HapII	CCGG	6 cut(s)	83, 260, 669, 714, 800, 898
HgaI	GACGC	6 cut(s)	34, 221, 593, 686, 848, 1023
HhaI	GCGC	5 cut(s)	250, 356, 728, 746, 819
Hin1I	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
Hin1II	CATG	9 cut(s)	118, 136, 1102, 1114, 1174, 1180, 1186, 1246, 1486
Hin6I	GCGC	5 cut(s)	248, 354, 726, 744, 817
HinP1I	GCGC	5 cut(s)	248, 354, 726, 744, 817
HpaII	CCGG	6 cut(s)	83, 260, 669, 714, 800, 898
HphI	GGTGA	2 cut(s)	175, 274
Hpy166II	GTNNAC	2 cut(s)	711, 940
Hpy188I	TCNGA	8 cut(s)	765, 813, 852, 952, 1027, 1221, 1357, 1392
Hpy188III	TCNNGA	9 cut(s)	102, 189, 224, 378, 481, 924, 965, 1401, 1535
Hpy8I	GTNNAC	2 cut(s)	711, 940
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	4 cut(s)	686, 695, 704, 961
HpyCH4V	TGCA	9 cut(s)	169, 245, 295, 997, 1017, 1081, 1259, 1306, 1462
HpyF3I	CTNAG	4 cut(s)	664, 740, 915, 1488
HpySE526I	ACGT	4 cut(s)	686, 695, 704, 961
Hsp92I	GRCGYC	6 cut(s)	585, 678, 695, 704, 840, 961
Hsp92II	CATG	9 cut(s)	118, 136, 1102, 1114, 1174, 1180, 1186, 1246, 1486
HspAI	GCGC	5 cut(s)	248, 354, 726, 744, 817
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	6 cut(s)	257, 295, 432, 747, 805, 916
LweI	GCATC	5 cut(s)	95, 156, 1094, 1200, 1449
MaeI	CTAG	3 cut(s)	603, 1329, 1500
MaeII	ACGT	4 cut(s)	686, 695, 704, 961
MaeIII	GTNAC	2 cut(s)	682, 1405
MalI	GATC	8 cut(s)	345, 452, 810, 904, 922, 974, 1326, 1422
MbiI	CCGCTC	2 cut(s)	99, 732
MboI	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
MboII	GAAGA	6 cut(s)	81, 134, 311, 574, 627, 994
MflI	RGATCY	1 cut(s)	1420
MhlI	GDGCHC	2 cut(s)	329, 480
MluCI	AATT	4 cut(s)	37, 53, 1001, 1411
MlyI	GAGTC	3 cut(s)	713, 1207, 1549
MmeI	TCCRAC	2 cut(s)	417, 1005
MseI	TTAA	3 cut(s)	23, 1004, 1367
MslI	CAYNNNNRTG	3 cut(s)	1175, 1181, 1187
MspA1I	CMGCKG	2 cut(s)	286, 539
MspI	CCGG	6 cut(s)	83, 260, 669, 714, 800, 898
MspR9I	CCNGG	6 cut(s)	316, 502, 670, 898, 899, 1131
Mva1269I	GAATGC	1 cut(s)	1308
MvaI	CCWGG	3 cut(s)	316, 502, 1131
MvnI	CGCG	3 cut(s)	45, 539, 728
NciI	CCSGG	3 cut(s)	670, 898, 899
NcoI	CCATGG	1 cut(s)	1098
NdeI	CATATG	2 cut(s)	1269, 1362
NdeII	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	9 cut(s)	118, 136, 1102, 1114, 1174, 1180, 1186, 1246, 1486
NlaIV	GGNNCC	9 cut(s)	549, 652, 1116, 1237, 1275, 1283, 1337, 1422, 1524
NmeAIII	GCCGAG	7 cut(s)	312, 421, 489, 763, 772, 868, 1533
NmuCI	GTSAC	1 cut(s)	682
NspV	TTCGAA	2 cut(s)	57, 1300
PaeR7I	CTCGAG	1 cut(s)	100
PaqCI	CACCTGC	1 cut(s)	1264
PciSI	GCTCTTC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	5 cut(s)	339, 692, 701, 704, 1031
PctI	GAATGC	1 cut(s)	1308
PfeI	GAWTC	7 cut(s)	265, 374, 533, 572, 760, 872, 1474
PflFI	GACNNNGTC	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	500
PleI	GAGTC	3 cut(s)	713, 1206, 1548
PpsI	GAGTC	3 cut(s)	713, 1206, 1548
PpuMI	RGGWCCY	1 cut(s)	1523
PshBI	ATTAAT	1 cut(s)	1004
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	1523
Psp6I	CCWGG	3 cut(s)	314, 500, 1129
PspFI	CCCAGC	1 cut(s)	1446
PspGI	CCWGG	3 cut(s)	314, 500, 1129
PspN4I	GGNNCC	9 cut(s)	549, 652, 1116, 1237, 1275, 1283, 1337, 1422, 1524
PspPI	GGNCC	7 cut(s)	471, 548, 937, 1114, 1274, 1336, 1523
PspPPI	RGGWCCY	1 cut(s)	1523
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	1 cut(s)	1420
PsyI	GACNNNGTC	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	1086, 1436
RsaNI	GTAC	2 cut(s)	1085, 1435
RseI	CAYNNNNRTG	3 cut(s)	1175, 1181, 1187
SacI	GAGCTC	1 cut(s)	480
SacII	CCGCGG	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	23, 1004, 1367
Sau3AI	GATC	8 cut(s)	343, 450, 808, 902, 920, 972, 1324, 1420
Sau96I	GGNCC	7 cut(s)	471, 548, 937, 1114, 1274, 1336, 1523
ScaI	AGTACT	1 cut(s)	1436
SchI	GAGTC	3 cut(s)	713, 1207, 1549
ScrFI	CCNGG	6 cut(s)	316, 502, 670, 898, 899, 1131
SduI	GDGCHC	2 cut(s)	329, 480
SfaNI	GCATC	5 cut(s)	95, 156, 1094, 1200, 1449
SfcI	CTRYAG	3 cut(s)	243, 320, 1466
Sfr274I	CTCGAG	1 cut(s)	100
Sfr303I	CCGCGG	1 cut(s)	540
SfuI	TTCGAA	2 cut(s)	57, 1300
SgrAI	CRCCGGYG	2 cut(s)	259, 799
SgrBI	CCGCGG	1 cut(s)	540
SinI	GGWCC	6 cut(s)	471, 937, 1114, 1274, 1336, 1523
SlaI	CTCGAG	1 cut(s)	100
SmaI	CCCGGG	1 cut(s)	899
SmiMI	CAYNNNNRTG	3 cut(s)	1175, 1181, 1187
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	4 cut(s)	37, 53, 1001, 1411
SspMI	CTAG	3 cut(s)	603, 1329, 1500
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	6 cut(s)	314, 500, 668, 896, 897, 1129
StyI	CCWWGG	1 cut(s)	1098
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	4 cut(s)	689, 698, 707, 964
TaqI	TCGA	9 cut(s)	57, 101, 560, 575, 582, 758, 905, 964, 1300
TaqII	GACCGA	2 cut(s)	488, 1291
TasI	AATT	4 cut(s)	37, 53, 1001, 1411
TatI	WGTACW	2 cut(s)	1084, 1434
TfiI	GAWTC	7 cut(s)	265, 374, 533, 572, 760, 872, 1474
Tru1I	TTAA	3 cut(s)	23, 1004, 1367
Tru9I	TTAA	3 cut(s)	23, 1004, 1367
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	6 cut(s)	245, 283, 445, 735, 793, 929
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	3 cut(s)	50, 546, 1062
TspGWI	ACGGA	1 cut(s)	168
TspMI	CCCGGG	1 cut(s)	897
TspRI	CASTG	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	706
VpaK11BI	GGWCC	6 cut(s)	471, 937, 1114, 1274, 1336, 1523
VspI	ATTAAT	1 cut(s)	1004
XapI	RAATTY	2 cut(s)	53, 1411
XhoI	CTCGAG	1 cut(s)	100
XmaI	CCCGGG	1 cut(s)	897
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	3 cut(s)	603, 1329, 1500
ZraI	GACGTC	3 cut(s)	696, 705, 962
ZrmI	AGTACT	1 cut(s)	1436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.