Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001638

Physical Location & Seq

Genomic Coordinates Forward (+)

22137834 .. 22142208

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCGATGGGAATGGGAATGGGAATGGGAATGGGCATGGGCATGGGAATGGGAATGGAAATGGGAATGAGTCGGCCTATGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCAAGGTTCCCTTTGCCACCATTTCAATTGCAGACTATGCTTCCCAATGATCCTAACAGAGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTCCGGATCCTTACCAGCAGTACTTCACTCCCCAGCAATTGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

6.81

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28800 AT4G28800 AT4G28811 AT4G28815 AT4G28815
fragaria_vesca	FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790
malus_domestica	MD05G1182300.v1.1 MD10G1170600.v1.1
prunus_persica	Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1
pyrus_communis	pycom10g14700
rosa_chinensis	RchiOBHm_Chr6g0285491
rosa_laevigata	RLG00000012635
rosa_multiflora	Rmu_sc0000284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183100
rosa_rugosa	Rorug06G0174800 Rorug06G0174800 Rorug06G0174900
rosa_samantha	Rh6AG286500 Rh6BG287700 Rh6CG288800 Rh6DG281600
rosa_wichuraiana	Rw6G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	2 cut(s)	18, 385
AclWI	GGATC	3 cut(s)	248, 344, 357
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	161, 194
AluI	AGCT	2 cut(s)	161, 194
AlwI	GGATC	3 cut(s)	248, 344, 357
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	25, 203, 452
AvaII	GGWCC	3 cut(s)	25, 203, 452
BamHI	GGATCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	3 cut(s)	25, 203, 452
BmgT120I	GGNCC	3 cut(s)	25, 203, 452
BmiI	GGNNCC	6 cut(s)	27, 166, 204, 212, 351, 453
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	3 cut(s)	5, 129, 378
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	9, 206
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	9, 206
BseGI	GGATG	2 cut(s)	20, 393
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	444
BseYI	CCCAGC	1 cut(s)	375
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	4 cut(s)	11, 216, 322, 465
BsmFI	GGGAC	4 cut(s)	11, 216, 322, 465
BsnI	GGCC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	253, 349
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	18, 385
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	6 cut(s)	27, 166, 204, 212, 351, 453
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	248, 344, 357
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	9, 206
BssMI	GATC	2 cut(s)	253, 349
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	9, 206
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	58, 241
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	20, 393
BstKTI	GATC	2 cut(s)	256, 352
BstMBI	GATC	2 cut(s)	253, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 139, 241, 397
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	20, 393
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	25, 203, 452
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	6 cut(s)	10, 22, 94, 100, 172, 412
CviJI	RGCY	6 cut(s)	133, 161, 194, 410, 421, 436
CviKI_1	RGCY	6 cut(s)	133, 161, 194, 410, 421, 436
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	255, 351
DpnII	GATC	2 cut(s)	253, 349
Eco130I	CCWWGG	2 cut(s)	9, 206
Eco47I	GGWCC	3 cut(s)	25, 203, 452
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	9, 206
ErhI	CCWWGG	2 cut(s)	9, 206
FaeI	CATG	6 cut(s)	13, 25, 97, 103, 175, 415
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	4 cut(s)	11, 216, 322, 465
FatI	CATG	6 cut(s)	9, 21, 93, 99, 171, 411
FauNDI	CATATG	2 cut(s)	198, 291
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	27, 400
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	6 cut(s)	13, 25, 97, 103, 175, 415
HinfI	GANTC	4 cut(s)	127, 264, 403, 469
HpaII	CCGG	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	150, 286, 321
Hpy188III	TCNNGA	3 cut(s)	330, 347, 464
HpyCH4V	TGCA	3 cut(s)	188, 235, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 139, 241, 397
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	6 cut(s)	13, 25, 97, 103, 175, 415
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	253, 349
LpnPI	CCDG	9 cut(s)	27, 54, 147, 198, 360, 371, 389, 457, 468
LweI	GCATC	3 cut(s)	5, 129, 378
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	255, 351
MboI	GATC	2 cut(s)	253, 349
MfeI	CAATTG	2 cut(s)	230, 380
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	3 cut(s)	230, 340, 380
MlyI	GAGTC	3 cut(s)	136, 273, 478
MnlI	CCTC	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	2 cut(s)	98, 104
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	2 cut(s)	230, 380
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	58, 139, 241, 397
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	2 cut(s)	198, 291
NdeII	GATC	2 cut(s)	253, 349
NlaIII	CATG	6 cut(s)	13, 25, 97, 103, 175, 415
NlaIV	GGNNCC	6 cut(s)	27, 166, 204, 212, 351, 453
NmeAIII	GCCGAG	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	3 cut(s)	135, 272, 477
PpsI	GAGTC	3 cut(s)	135, 272, 477
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	6 cut(s)	27, 166, 204, 212, 351, 453
PspPI	GGNCC	3 cut(s)	25, 203, 452
PspPPI	RGGWCCY	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	98, 104
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	253, 349
Sau96I	GGNCC	3 cut(s)	25, 203, 452
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	3 cut(s)	136, 273, 478
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	5 cut(s)	163, 187, 196, 212, 457
SfaNI	GCATC	3 cut(s)	5, 129, 378
SfcI	CTRYAG	1 cut(s)	395
SinI	GGWCC	3 cut(s)	25, 203, 452
SmiMI	CAYNNNNRTG	2 cut(s)	98, 104
Sse9I	AATT	3 cut(s)	230, 340, 380
SsiI	CCGC	2 cut(s)	18, 385
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	9, 206
TasI	AATT	3 cut(s)	230, 340, 380
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	25, 203, 452
XapI	RAATTY	1 cut(s)	340
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.