AT4G28815

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001638
Physical Location & Seq
Forward (+)
14228578 .. 14230380
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28815.2

Sequence Viewer

Length: 924 bp
ATGATGATTATATCATCACAGATTCTTCTTCTTTTTGGTTTTAAACTTTTTTTTGAAACTAGGGGTGAAGATGATATAGTGGAGCTCTTATGTAAGATTGGCCAGACACAGATACCCTCCTCCGATCCTCTTCCCATTCTCCGTGGCAGCGGAAGTGGCGGACGAGAAGAAAATACTCCGCTTCCGCCTCCTCTGCCTCATCAGAATCTCTTCATCCAGGAAGACGAAATGTCTTCTTGGCCCCATCATCCACTCCGTCAAGATTATTTGTGCTCTGAACTTTATGCTTCCACTCCGGCTCCTCATCCGCAGAGTTCCGTCTCTCTGGCACCACCACCACCAAAACCACCATCCAGTGCTCCGTACGGTCAGATTATCGCTCCAAGAAGTGCTCCGAGAATCCAGGGAACTGAAGAAGCTCGAGGTTCAACGTCTAGGAAGAGGTCACGAGCTGCAGAAATGCATAACCTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGAGAATGAAGACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAATGCTGGAAGATGTTATCGAGTACGTGAAATCTCTAGAGATGCAAATAAATCAGTTCATGCCCCACATGGCCATGGGTATGAATCAGCCTCCTGCATACATACCTTTCCCTAGCCAGGCTCATATGGCGGGTGTAGGTCCATCATATCCACCACCGCGATACCCTTTTCCAAACATTCAGACCTTTGACCCATCCAGAGTTTGGTTACAAAGTCCACAGCCTAACCCGGTGTCGAACCAACCTCAGATGAATCCTTATGGTCAGTTTGTTGGTCACCATCAGATGCAACAATCTCTTCCTCCTCCATTGCAGGTAATTCTTTCCCAATATCCATTGTGCTTATTCCTCTGTTCCAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

307

Amino Acids

34.59

Weight (kDa)

8.79

Isoelectric Point (pI)

75.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 77 - 124 1.3e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 862
AccB1I GGYRCC 1 cut(s) 328
AccB7I CCANNNNNTGG 1 cut(s) 762
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 718
AciI CCGC 7 cut(s) 150, 159, 179, 185, 308, 689, 716
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 2 cut(s) 100, 630
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 365, 584
AfiI CCNNNNNNNGG 2 cut(s) 676, 762
AgsI TTSAA 3 cut(s) 56, 429, 561
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 3 cut(s) 216, 402, 675
AluBI AGCT 3 cut(s) 85, 419, 452
AluI AGCT 3 cut(s) 85, 419, 452
Alw21I GWGCWC 4 cut(s) 87, 275, 361, 394
Alw26I GTCTC 2 cut(s) 325, 475
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 3 cut(s) 100, 239, 630
ApeKI GCWGC 3 cut(s) 147, 452, 537
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 240, 698
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 2 cut(s) 77, 827
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 698
BalI TGGCCA 2 cut(s) 102, 632
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 3 cut(s) 225, 228, 518
Bbv12I GWGCWC 4 cut(s) 87, 275, 361, 394
BbvI GCAGC 3 cut(s) 159, 439, 524
BccI CCATC 5 cut(s) 252, 358, 709, 760, 846
BciT130I CCWGG 3 cut(s) 218, 404, 677
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 2 cut(s) 325, 475
BfaI CTAG 4 cut(s) 60, 435, 596, 672
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 862
BisI GCNGC 3 cut(s) 148, 453, 538
BlsI GCNGC 3 cut(s) 149, 454, 539
Bme1390I CCNGG 4 cut(s) 218, 404, 677, 788
Bme18I GGWCC 1 cut(s) 698
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 240, 698
BmiI GGNNCC 3 cut(s) 242, 300, 330
BmrFI CCNGG 4 cut(s) 218, 404, 677, 788
BmsI GCATC 2 cut(s) 591, 834
BpiI GAAGAC 3 cut(s) 225, 228, 518
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 142, 403, 633
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 762
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 866
BseBI CCWGG 3 cut(s) 218, 404, 677
BseDI CCNNGG 3 cut(s) 142, 403, 633
BseGI GGATG 5 cut(s) 213, 247, 304, 350, 752
BseLI CCNNNNNNNGG 2 cut(s) 676, 762
BseMI GCAATG 1 cut(s) 866
BseMII CTCAG 1 cut(s) 818
BseNI ACTGG 1 cut(s) 354
BseRI GAGGAG 4 cut(s) 109, 180, 291, 852
BseXI GCAGC 3 cut(s) 159, 439, 524
Bsh1236I CGCG 1 cut(s) 718
BshFI GGCC 3 cut(s) 102, 241, 632
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 4 cut(s) 87, 275, 361, 394
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 2 cut(s) 296, 788
BsiWI CGTACG 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 676, 762
BsmAI GTCTC 2 cut(s) 325, 475
BsmBI CGTCTC 2 cut(s) 325, 475
BsnI GGCC 3 cut(s) 102, 241, 632
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 4 cut(s) 87, 275, 361, 394
Bsp143I GATC 2 cut(s) 124, 495
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 7 cut(s) 150, 159, 179, 185, 308, 689, 716
BspANI GGCC 3 cut(s) 102, 241, 632
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 242, 300, 330
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 866
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 142, 403, 633
BssMI GATC 2 cut(s) 124, 495
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 218, 404, 677
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 4 cut(s) 135, 215, 434, 861
BstBAI YACGTR 1 cut(s) 586
BstDEI CTNAG 1 cut(s) 804
BstDSI CCRYGG 2 cut(s) 142, 633
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 5 cut(s) 213, 247, 304, 350, 752
BstFNI CGCG 1 cut(s) 718
BstKTI GATC 2 cut(s) 127, 498
BstMAI GTCTC 2 cut(s) 325, 475
BstMBI GATC 2 cut(s) 124, 495
BstMWI GCNNNNNNNGC 3 cut(s) 156, 193, 686
BstNI CCWGG 3 cut(s) 218, 404, 677
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 4 cut(s) 216, 402, 675, 786
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 159, 439, 524
BstV2I GAAGAC 3 cut(s) 225, 228, 518
BsuRI GGCC 3 cut(s) 102, 241, 632
BtgI CCRYGG 2 cut(s) 142, 633
BtsCI GGATG 5 cut(s) 213, 247, 304, 350, 752
BtsIMutI CAGTG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 862
Cfr13I GGNCC 2 cut(s) 240, 698
Csp6I GTAC 2 cut(s) 364, 583
CviAII CATG 3 cut(s) 619, 628, 634
CviQI GTAC 2 cut(s) 364, 583
DdeI CTNAG 1 cut(s) 804
DpnI GATC 2 cut(s) 126, 497
DpnII GATC 2 cut(s) 124, 495
DraI TTTAAA 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 2 cut(s) 100, 630
Eam1104I CTCTTC 4 cut(s) 135, 215, 434, 861
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 4 cut(s) 135, 215, 434, 861
EciI GGCGGA 2 cut(s) 174, 174
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 3 cut(s) 216, 402, 675
EcoT14I CCWWGG 1 cut(s) 633
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 633
Esp3I CGTCTC 2 cut(s) 325, 475
FaeI CATG 3 cut(s) 622, 631, 637
FatI CATG 3 cut(s) 618, 627, 633
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 684
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 3 cut(s) 148, 453, 538
FokI GGATG 5 cut(s) 200, 234, 291, 337, 739
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 148, 453, 538
FspBI CTAG 4 cut(s) 60, 435, 596, 672
GluI GCNGC 3 cut(s) 148, 453, 538
HaeIII GGCC 3 cut(s) 102, 241, 632
HapII CCGG 2 cut(s) 296, 788
Hin1II CATG 3 cut(s) 622, 631, 637
HinfI GANTC 6 cut(s) 22, 205, 399, 514, 643, 811
HpaII CCGG 2 cut(s) 296, 788
HphI GGTGA 2 cut(s) 77, 827
Hpy166II GTNNAC 2 cut(s) 549, 776
Hpy188I TCNGA 8 cut(s) 124, 204, 277, 372, 396, 741, 807, 843
Hpy188III TCNNGA 4 cut(s) 260, 447, 596, 756
Hpy8I GTNNAC 2 cut(s) 549, 776
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 431, 585
HpyCH4V TGCA 8 cut(s) 455, 463, 520, 540, 604, 656, 847, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 193, 686
HpyF3I CTNAG 1 cut(s) 804
HpySE526I ACGT 2 cut(s) 431, 585
Hsp92II CATG 3 cut(s) 622, 631, 637
Kzo9I GATC 2 cut(s) 124, 495
LmnI GCTCC 5 cut(s) 82, 304, 364, 385, 397
Lsp1109I GCAGC 3 cut(s) 159, 439, 524
LweI GCATC 2 cut(s) 591, 834
MaeI CTAG 4 cut(s) 60, 435, 596, 672
MaeII ACGT 2 cut(s) 431, 585
MaeIII GTNAC 3 cut(s) 444, 765, 833
MalI GATC 2 cut(s) 126, 497
MboI GATC 2 cut(s) 124, 495
MhlI GDGCHC 4 cut(s) 87, 275, 361, 394
MlsI TGGCCA 2 cut(s) 102, 632
MluCI AATT 1 cut(s) 876
MluNI TGGCCA 2 cut(s) 102, 632
MlyI GAGTC 1 cut(s) 508
Mox20I TGGCCA 2 cut(s) 102, 632
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 2 cut(s) 102, 632
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 632, 638
Msp20I TGGCCA 2 cut(s) 102, 632
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 2 cut(s) 296, 788
MspR9I CCNGG 4 cut(s) 218, 404, 677, 788
MvaI CCWGG 3 cut(s) 218, 404, 677
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 3 cut(s) 156, 193, 686
NciI CCSGG 1 cut(s) 788
NcoI CCATGG 1 cut(s) 633
NdeI CATATG 1 cut(s) 684
NdeII GATC 2 cut(s) 124, 495
NlaIII CATG 3 cut(s) 622, 631, 637
NlaIV GGNNCC 3 cut(s) 242, 300, 330
NmuCI GTSAC 2 cut(s) 444, 833
NsiI ATGCAT 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 5 cut(s) 22, 205, 399, 643, 811
Pfl23II CGTACG 1 cut(s) 363
PflMI CCANNNNNTGG 1 cut(s) 762
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 3 cut(s) 149, 454, 539
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 3 cut(s) 216, 402, 675
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 3 cut(s) 216, 402, 675
PspLI CGTACG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 242, 300, 330
PspPI GGNCC 2 cut(s) 240, 698
PspXI VCTCGAGB 1 cut(s) 420
PstI CTGCAG 1 cut(s) 457
RsaI GTAC 2 cut(s) 365, 584
RsaNI GTAC 2 cut(s) 364, 583
RseI CAYNNNNRTG 2 cut(s) 632, 638
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 3 cut(s) 148, 453, 538
Sau3AI GATC 2 cut(s) 124, 495
Sau96I GGNCC 2 cut(s) 240, 698
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 4 cut(s) 218, 404, 677, 788
SduI GDGCHC 4 cut(s) 87, 275, 361, 394
SfaNI GCATC 2 cut(s) 591, 834
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 420
SmiMI CAYNNNNRTG 2 cut(s) 632, 638
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 1 cut(s) 876
SsiI CCGC 7 cut(s) 150, 159, 179, 185, 308, 689, 716
SspMI CTAG 4 cut(s) 60, 435, 596, 672
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 216, 402, 675, 786
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 434, 588
TaqI TCGA 3 cut(s) 421, 579, 794
TasI AATT 1 cut(s) 876
TfiI GAWTC 5 cut(s) 22, 205, 399, 643, 811
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 444, 833
TseI GCWGC 3 cut(s) 147, 452, 537
Tsp45I GTSAC 2 cut(s) 444, 833
TspDTI ATGAA 5 cut(s) 202, 524, 607, 656, 824
TspGWI ACGGA 5 cut(s) 131, 245, 307, 351, 499
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 762
VpaK11BI GGWCC 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 759
XhoI CTCGAG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 4 cut(s) 60, 435, 596, 672
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.