Rh6AG286500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001638
Physical Location & Seq
Reverse (-)
48286812 .. 48291068
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG286500.1

Sequence Viewer

Length: 1542 bp
ATGAATTACCGCGTCCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCCTCTTCTCCTCGCTCGAGAAAATCCACCATGCCAGAAGATGAGGTCATGGAACTGCTATGGCAGAACGGACAGGTGGTGATGCAGAGCCAAACCCAGAGGTCGGGACATAAGAAGTCCAAATACGACGCTGTTATTCCCGAACATACCAGACCTCCTGCAGCACAACCGCCGCCGGTGAATCAATATCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACCGATTCCAGAAACGCTCAATCCAGCAACACCGCCGCCAACCTTCCACAGATTTCTCCGCCGCCGCCGCCTCCCCCTCGGCTGCCTATCCATCCTCCGCCGCCGGCGCCCAGGAGGACCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAATAAGTCTCGGTATGAATCCGCGGCGGTGGGGCCGTCGGGGTCGAAGAGCGTGGATTCGAGGTTCGACGCCTCCAGCAACAATGCTAGCGGCGGCGGAAGAGGACTTGCCGCCACCGCTACGATGTCGTTCGGTGCCGCCGCCTCAGCCGGGAAAGACGCCGTGACGTGCGAGACGTCGCTGACGTCGTCTACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGAAGCCGCCGCCTCCGCCTCCTCCGCTGCCGGTGGAGGATCGGAAGCGCAAAGAGAGAGTGGCCGACGACGCCGAGTGTCAGAGCGAGGATGTGGAGTTTGAATCTGGGAGTGGAAAGAAGCAGACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCAGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCGATGGGAATGGGAATGGGAATGGGAATGGGCATGGGCATGGGCATGGGCATGGAAATGGGAATGAGTCGGCCTATGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCGAGGTTGCCTTTGCCACCATTTCGAATGCAGACTATGCTTCCCAATGATCCTAGCAGAGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTGCGGATCCTTACCAGCAGTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

513

Amino Acids

56.38

Weight (kDa)

6.73

Isoelectric Point (pI)

70.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 303 - 350 6.5e-13 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 309 - 352 1.6e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1255
AatII GACGTC 3 cut(s) 677, 686, 937
Acc36I ACCTGC 1 cut(s) 1255
AccB1I GGYRCC 2 cut(s) 442, 632
AccBSI CCGCTC 1 cut(s) 711
AccI GTMKAC 1 cut(s) 689
AccII CGCG 3 cut(s) 12, 521, 707
AclWI GGATC 7 cut(s) 305, 789, 883, 953, 1310, 1406, 1419
AcoI YGGCCR 2 cut(s) 276, 804
AcsI RAATTY 2 cut(s) 20, 1402
AcuI CTGAAG 1 cut(s) 1031
AcyI GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
AfaI GTAC 2 cut(s) 1059, 1427
AfiI CCNNNNNNNGG 2 cut(s) 154, 648
AgsI TTSAA 2 cut(s) 845, 1039
AhdI GACNNNNNGTC 1 cut(s) 1006
AjiI CACGTC 1 cut(s) 666
AjnI CCWGG 4 cut(s) 281, 446, 482, 1102
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 5 cut(s) 253, 460, 902, 1223, 1256
AluI AGCT 5 cut(s) 253, 460, 902, 1223, 1256
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 4 cut(s) 510, 665, 690, 925
AlwI GGATC 7 cut(s) 305, 789, 883, 953, 1310, 1406, 1419
AlwNI CAGNNNCTG 1 cut(s) 1247
Ama87I CYCGRG 2 cut(s) 67, 870
AoxI GGCC 5 cut(s) 51, 276, 530, 804, 1193
ApeKI GCWGC 7 cut(s) 212, 250, 418, 714, 769, 902, 1080
ApoI RAATTY 2 cut(s) 20, 1402
AseI ATTAAT 1 cut(s) 977
AspLEI GCGC 5 cut(s) 323, 445, 707, 725, 792
AspS9I GGNCC 6 cut(s) 453, 530, 910, 1087, 1265, 1514
AsuC2I CCSGG 3 cut(s) 649, 871, 872
AsuHPI GGTGA 2 cut(s) 142, 241
AsuII TTCGAA 2 cut(s) 24, 1291
AsuNHI GCTAGC 1 cut(s) 584
AvaI CYCGRG 2 cut(s) 67, 870
AvaII GGWCC 5 cut(s) 453, 910, 1087, 1265, 1514
BaeGI GKGCMC 1 cut(s) 296
BamHI GGATCC 1 cut(s) 1411
BanI GGYRCC 2 cut(s) 442, 632
BanII GRGCYC 1 cut(s) 462
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 2 cut(s) 897, 1392
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 462
BbvCI CCTCAGC 2 cut(s) 643, 1479
BbvI GCAGC 7 cut(s) 224, 262, 405, 726, 756, 889, 1092
BccI CCATC 2 cut(s) 435, 1120
BceAI ACGGC 2 cut(s) 517, 644
BciT130I CCWGG 4 cut(s) 283, 448, 484, 1104
BcnI CCSGG 3 cut(s) 649, 871, 872
BcoDI GTCTC 4 cut(s) 510, 665, 690, 925
BfaI CTAG 3 cut(s) 585, 1320, 1491
BfmI CTRYAG 3 cut(s) 210, 287, 1457
BfoI RGCGCY 2 cut(s) 446, 726
BfuAI ACCTGC 1 cut(s) 1255
BglI GCCNNNNNGGC 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 1427
Bme1390I CCNGG 7 cut(s) 283, 448, 484, 649, 871, 872, 1104
Bme18I GGWCC 5 cut(s) 453, 910, 1087, 1265, 1514
BmeRI GACNNNNNGTC 1 cut(s) 1006
BmeT110I CYCGRG 2 cut(s) 67, 870
BmgBI CACGTC 1 cut(s) 666
BmgT120I GGNCC 6 cut(s) 453, 530, 910, 1087, 1265, 1514
BmiI GGNNCC 8 cut(s) 444, 531, 634, 1089, 1228, 1266, 1413, 1515
BmrFI CCNGG 7 cut(s) 283, 448, 484, 649, 871, 872, 1104
BmsI GCATC 4 cut(s) 123, 1067, 1191, 1440
BmtI GCTAGC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 3 cut(s) 466, 556, 685
Bpu10I CCTNAGC 3 cut(s) 643, 719, 1479
Bpu14I TTCGAA 2 cut(s) 24, 1291
BpuMI CCSGG 3 cut(s) 649, 871, 872
BsaHI GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
BsaJI CCNNGG 7 cut(s) 413, 446, 519, 870, 871, 1071, 1268
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 905, 935
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 648
Bse118I RCCGGY 3 cut(s) 226, 439, 772
Bse1I ACTGG 1 cut(s) 1506
BseBI CCWGG 4 cut(s) 283, 448, 484, 1104
BseDI CCNNGG 7 cut(s) 413, 446, 519, 870, 871, 1071, 1268
BseGI GGATG 6 cut(s) 427, 492, 838, 1024, 1082, 1455
BseLI CCNNNNNNNGG 2 cut(s) 154, 648
BseMII CTCAG 2 cut(s) 657, 1493
BseNI ACTGG 1 cut(s) 1506
BseRI GAGGAG 2 cut(s) 51, 753
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 7 cut(s) 224, 262, 405, 726, 756, 889, 1092
BseYI CCCAGC 1 cut(s) 1437
Bsh1236I CGCG 3 cut(s) 12, 521, 707
BshFI GGCC 5 cut(s) 53, 278, 532, 806, 1195
BshNI GGYRCC 2 cut(s) 442, 632
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 2 cut(s) 67, 870
BsiSI CCGG 7 cut(s) 50, 227, 440, 648, 693, 773, 871
BslFI GGGAC 5 cut(s) 171, 1073, 1278, 1384, 1527
BslI CCNNNNNNNGG 2 cut(s) 154, 648
BsmAI GTCTC 4 cut(s) 510, 665, 690, 925
BsmBI CGTCTC 2 cut(s) 665, 925
BsmFI GGGAC 5 cut(s) 171, 1073, 1278, 1384, 1527
BsmI GAATGC 1 cut(s) 1299
BsnI GGCC 5 cut(s) 53, 278, 532, 806, 1195
BsoBI CYCGRG 2 cut(s) 67, 870
Bsp119I TTCGAA 2 cut(s) 24, 1291
Bsp1286I GDGCHC 2 cut(s) 296, 462
Bsp143I GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
Bsp19I CCATGG 1 cut(s) 1071
BspANI GGCC 5 cut(s) 53, 278, 532, 806, 1195
BspCNI CTCAG 2 cut(s) 656, 1492
BspFNI CGCG 3 cut(s) 12, 521, 707
BspLI GGNNCC 8 cut(s) 444, 531, 634, 1089, 1228, 1266, 1413, 1515
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 1255
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 7 cut(s) 305, 789, 883, 953, 1310, 1406, 1419
BspQI GCTCTTC 1 cut(s) 539
BspT104I TTCGAA 2 cut(s) 24, 1291
BspT107I GGYRCC 2 cut(s) 442, 632
BsrBI CCGCTC 1 cut(s) 711
BsrFI RCCGGY 3 cut(s) 226, 439, 772
BsrI ACTGG 1 cut(s) 1506
BssAI RCCGGY 3 cut(s) 226, 439, 772
BssECI CCNNGG 7 cut(s) 413, 446, 519, 870, 871, 1071, 1268
BssMI GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
BssNI GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
BssSI CACGAG 2 cut(s) 897, 1392
BssT1I CCWWGG 1 cut(s) 1071
Bst2BI CACGAG 2 cut(s) 897, 1392
Bst2UI CCWGG 4 cut(s) 283, 448, 484, 1104
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 61, 539, 592
BstACI GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
BstAPI GCANNNNNTGC 2 cut(s) 1120, 1303
BstBI TTCGAA 2 cut(s) 24, 1291
BstC8I GCNNGC 4 cut(s) 441, 586, 709, 1496
BstDEI CTNAG 4 cut(s) 643, 719, 888, 1479
BstDSI CCRYGG 2 cut(s) 519, 1071
BstF5I GGATG 6 cut(s) 427, 492, 838, 1024, 1082, 1455
BstFNI CGCG 3 cut(s) 12, 521, 707
BstH2I RGCGCY 2 cut(s) 446, 726
BstHHI GCGC 5 cut(s) 323, 445, 707, 725, 792
BstKTI GATC 7 cut(s) 313, 784, 878, 896, 948, 1318, 1414
BstMAI GTCTC 4 cut(s) 510, 665, 690, 925
BstMBI GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
BstNI CCWGG 4 cut(s) 283, 448, 484, 1104
BstSCI CCNGG 7 cut(s) 281, 446, 482, 647, 869, 870, 1102
BstSFI CTRYAG 3 cut(s) 210, 287, 1457
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 3 cut(s) 12, 521, 707
BstV1I GCAGC 7 cut(s) 224, 262, 405, 726, 756, 889, 1092
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 1411
BstYI RGATCY 1 cut(s) 1411
BsuRI GGCC 5 cut(s) 53, 278, 532, 806, 1195
BtgI CCRYGG 2 cut(s) 519, 1071
BtrI CACGTC 1 cut(s) 666
BtsCI GGATG 6 cut(s) 427, 492, 838, 1024, 1082, 1455
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 1 cut(s) 1255
Cac8I GCNNGC 4 cut(s) 441, 586, 709, 1496
CaiI CAGNNNCTG 1 cut(s) 1247
CfoI GCGC 5 cut(s) 323, 445, 707, 725, 792
Cfr10I RCCGGY 3 cut(s) 226, 439, 772
Cfr13I GGNCC 6 cut(s) 453, 530, 910, 1087, 1265, 1514
Cfr42I CCGCGG 1 cut(s) 522
Cfr9I CCCGGG 1 cut(s) 870
CseI GACGC 5 cut(s) 188, 575, 665, 821, 996
Csp6I GTAC 2 cut(s) 1058, 1426
CviQI GTAC 2 cut(s) 1058, 1426
DdeI CTNAG 4 cut(s) 643, 719, 888, 1479
DinI GGCGCC 1 cut(s) 444
DpnI GATC 7 cut(s) 312, 783, 877, 895, 947, 1317, 1413
DpnII GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
DriI GACNNNNNGTC 1 cut(s) 1006
EaeI YGGCCR 2 cut(s) 276, 804
Eam1104I CTCTTC 3 cut(s) 61, 539, 592
Eam1105I GACNNNNNGTC 1 cut(s) 1006
EarI CTCTTC 3 cut(s) 61, 539, 592
EciI GGCGGA 4 cut(s) 384, 423, 609, 747
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 462
Eco47I GGWCC 5 cut(s) 453, 910, 1087, 1265, 1514
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 1031
Eco88I CYCGRG 2 cut(s) 67, 870
EcoICRI GAGCTC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 1514
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 4 cut(s) 281, 446, 482, 1102
EcoT14I CCWWGG 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 462
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 1071
Esp3I CGTCTC 2 cut(s) 665, 925
FaqI GGGAC 5 cut(s) 171, 1073, 1278, 1384, 1527
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 2 cut(s) 1260, 1353
FblI GTMKAC 1 cut(s) 689
FokI GGATG 6 cut(s) 414, 499, 845, 1031, 1089, 1462
FriOI GRGCYC 1 cut(s) 462
FspBI CTAG 3 cut(s) 585, 1320, 1491
GlaI GCGC 5 cut(s) 322, 444, 706, 724, 791
GsaI CCCAGC 1 cut(s) 1441
GsuI CTGGAG 3 cut(s) 466, 556, 685
HaeII RGCGCY 2 cut(s) 446, 726
HaeIII GGCC 5 cut(s) 53, 278, 532, 806, 1195
HapII CCGG 7 cut(s) 50, 227, 440, 648, 693, 773, 871
HgaI GACGC 5 cut(s) 188, 575, 665, 821, 996
HhaI GCGC 5 cut(s) 323, 445, 707, 725, 792
Hin1I GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
Hin6I GCGC 5 cut(s) 321, 443, 705, 723, 790
HinP1I GCGC 5 cut(s) 321, 443, 705, 723, 790
HpaII CCGG 7 cut(s) 50, 227, 440, 648, 693, 773, 871
HphI GGTGA 2 cut(s) 142, 241
Hpy166II GTNNAC 2 cut(s) 690, 913
Hpy188I TCNGA 8 cut(s) 744, 786, 825, 925, 1000, 1212, 1348, 1383
Hpy188III TCNNGA 9 cut(s) 69, 156, 191, 345, 463, 897, 938, 1392, 1526
Hpy8I GTNNAC 2 cut(s) 690, 913
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 4 cut(s) 665, 674, 683, 934
HpyF3I CTNAG 4 cut(s) 643, 719, 888, 1479
HpySE526I ACGT 4 cut(s) 665, 674, 683, 934
Hsp92I GRCGYC 7 cut(s) 443, 567, 657, 674, 683, 813, 934
HspAI GCGC 5 cut(s) 321, 443, 705, 723, 790
KasI GGCGCC 1 cut(s) 442
KroI GCCGGC 1 cut(s) 439
KroNI GCCGGC 1 cut(s) 441
KspI CCGCGG 1 cut(s) 522
Kzo9I GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
LguI GCTCTTC 1 cut(s) 539
LmnI GCTCC 1 cut(s) 465
Lsp1109I GCAGC 7 cut(s) 224, 262, 405, 726, 756, 889, 1092
LweI GCATC 4 cut(s) 123, 1067, 1191, 1440
MaeI CTAG 3 cut(s) 585, 1320, 1491
MaeII ACGT 4 cut(s) 665, 674, 683, 934
MaeIII GTNAC 2 cut(s) 661, 1396
MalI GATC 7 cut(s) 312, 783, 877, 895, 947, 1317, 1413
MbiI CCGCTC 1 cut(s) 711
MboI GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
MboII GAAGA 6 cut(s) 48, 101, 278, 556, 609, 967
MflI RGATCY 1 cut(s) 1411
MhlI GDGCHC 2 cut(s) 296, 462
MluCI AATT 4 cut(s) 4, 20, 974, 1402
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 4 cut(s) 692, 1198, 1335, 1540
MmeI TCCRAC 1 cut(s) 978
MreI CGCCGGCG 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 439
MseI TTAA 2 cut(s) 977, 1358
MslI CAYNNNNRTG 4 cut(s) 1160, 1166, 1172, 1178
MspA1I CMGCKG 3 cut(s) 253, 521, 769
MspI CCGG 7 cut(s) 50, 227, 440, 648, 693, 773, 871
MspR9I CCNGG 7 cut(s) 283, 448, 484, 649, 871, 872, 1104
Mva1269I GAATGC 1 cut(s) 1299
MvaI CCWGG 4 cut(s) 283, 448, 484, 1104
MvnI CGCG 3 cut(s) 12, 521, 707
NaeI GCCGGC 1 cut(s) 441
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 3 cut(s) 649, 871, 872
NcoI CCATGG 1 cut(s) 1071
NdeI CATATG 2 cut(s) 1260, 1353
NdeII GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
NgoMIV GCCGGC 1 cut(s) 439
NheI GCTAGC 1 cut(s) 584
NlaIV GGNNCC 8 cut(s) 444, 531, 634, 1089, 1228, 1266, 1413, 1515
NmeAIII GCCGAG 5 cut(s) 279, 394, 751, 841, 1524
NmuCI GTSAC 1 cut(s) 661
NspV TTCGAA 2 cut(s) 24, 1291
PaeR7I CTCGAG 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 1255
PciSI GCTCTTC 1 cut(s) 539
PcsI WCGNNNNNNNCGW 5 cut(s) 306, 671, 680, 683, 1004
PctI GAATGC 1 cut(s) 1299
PdiI GCCGGC 1 cut(s) 441
PfeI GAWTC 7 cut(s) 232, 341, 515, 554, 739, 845, 1465
PflFI GACNNNGTC 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 482
PleI GAGTC 4 cut(s) 692, 1197, 1334, 1539
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 4 cut(s) 692, 1197, 1334, 1539
PpuMI RGGWCCY 1 cut(s) 1514
PshBI ATTAAT 1 cut(s) 977
Psp124BI GAGCTC 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 1514
Psp6I CCWGG 4 cut(s) 281, 446, 482, 1102
PspFI CCCAGC 1 cut(s) 1437
PspGI CCWGG 4 cut(s) 281, 446, 482, 1102
PspN4I GGNNCC 8 cut(s) 444, 531, 634, 1089, 1228, 1266, 1413, 1515
PspPI GGNCC 6 cut(s) 453, 530, 910, 1087, 1265, 1514
PspPPI RGGWCCY 1 cut(s) 1514
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 1247
PsuI RGATCY 1 cut(s) 1411
PsyI GACNNNGTC 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 2 cut(s) 1059, 1427
RsaNI GTAC 2 cut(s) 1058, 1426
RseI CAYNNNNRTG 4 cut(s) 1160, 1166, 1172, 1178
SacI GAGCTC 1 cut(s) 462
SacII CCGCGG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 977, 1358
Sau3AI GATC 7 cut(s) 310, 781, 875, 893, 945, 1315, 1411
Sau96I GGNCC 6 cut(s) 453, 530, 910, 1087, 1265, 1514
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 4 cut(s) 692, 1198, 1335, 1540
ScrFI CCNGG 7 cut(s) 283, 448, 484, 649, 871, 872, 1104
SduI GDGCHC 2 cut(s) 296, 462
SfaNI GCATC 4 cut(s) 123, 1067, 1191, 1440
SfcI CTRYAG 3 cut(s) 210, 287, 1457
SfoI GGCGCC 1 cut(s) 444
Sfr274I CTCGAG 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 522
SfuI TTCGAA 2 cut(s) 24, 1291
SgrAI CRCCGGYG 2 cut(s) 226, 439
SgrBI CCGCGG 1 cut(s) 522
SinI GGWCC 5 cut(s) 453, 910, 1087, 1265, 1514
SlaI CTCGAG 1 cut(s) 67
SmaI CCCGGG 1 cut(s) 872
SmiMI CAYNNNNRTG 4 cut(s) 1160, 1166, 1172, 1178
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 4 cut(s) 4, 20, 974, 1402
SspDI GGCGCC 1 cut(s) 442
SspMI CTAG 3 cut(s) 585, 1320, 1491
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 7 cut(s) 281, 446, 482, 647, 869, 870, 1102
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 4 cut(s) 668, 677, 686, 937
TaqI TCGA 9 cut(s) 24, 68, 542, 557, 564, 737, 878, 937, 1291
TaqII GACCGA 2 cut(s) 470, 1282
TasI AATT 4 cut(s) 4, 20, 974, 1402
TatI WGTACW 2 cut(s) 1057, 1425
TfiI GAWTC 7 cut(s) 232, 341, 515, 554, 739, 845, 1465
Tru1I TTAA 2 cut(s) 977, 1358
Tru9I TTAA 2 cut(s) 977, 1358
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 7 cut(s) 212, 250, 418, 714, 769, 902, 1080
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 3 cut(s) 17, 528, 1035
TspGWI ACGGA 1 cut(s) 135
TspMI CCCGGG 1 cut(s) 870
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 685
VpaK11BI GGWCC 5 cut(s) 453, 910, 1087, 1265, 1514
VspI ATTAAT 1 cut(s) 977
XapI RAATTY 2 cut(s) 20, 1402
XhoI CTCGAG 1 cut(s) 67
XmaI CCCGGG 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 3 cut(s) 585, 1320, 1491
ZraI GACGTC 3 cut(s) 675, 684, 935
ZrmI AGTACT 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.